Wall clock time and date at job start Tue Mar 31 2020 19:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29461 * 117.69241 * 2 1 4 4 C 1.50700 * 118.17116 * 0.81146 * 3 2 1 5 5 C 1.50318 * 123.65202 * 180.83620 * 3 2 1 6 6 N 1.47005 * 109.16741 * 349.02648 * 5 3 2 7 7 C 1.34777 * 121.37119 * 222.94880 * 6 5 3 8 8 O 1.21356 * 119.99421 * 181.56579 * 7 6 5 9 9 C 1.49446 * 120.00443 * 1.56599 * 7 6 5 10 10 O 1.21348 * 119.99822 * 352.92517 * 9 7 6 11 11 N 1.34774 * 120.00335 * 172.91977 * 9 7 6 12 12 C 1.47076 * 120.88326 * 173.05894 * 11 9 7 13 13 C 1.53246 * 108.52196 * 128.79513 * 12 11 9 14 14 N 1.46893 * 109.33947 * 53.82591 * 13 12 11 15 15 C 1.46908 * 110.99840 * 172.74678 * 14 13 12 16 16 C 1.50702 * 109.46758 * 73.79425 * 15 14 13 17 17 H 1.07994 * 119.99905 * 4.76821 * 16 15 14 18 18 C 1.37878 * 119.99648 * 184.76463 * 16 15 14 19 19 N 1.31508 * 119.99937 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00055 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47185 * 89.99757 * 20 18 16 22 22 H 1.48497 * 109.47415 * 209.99609 * 20 18 16 23 23 H 1.48497 * 109.47272 * 330.00009 * 20 18 16 24 24 C 1.46895 * 111.27287 * 296.89615 * 14 13 12 25 25 C 1.47086 * 120.87805 * 353.03385 * 11 9 7 26 26 C 1.47338 * 117.25103 * 43.21306 * 6 5 3 27 27 C 1.49972 * 117.70060 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47755 * 5.04189 * 1 2 3 29 29 H 1.08998 * 109.46897 * 125.04873 * 1 2 3 30 30 H 1.09006 * 109.46865 * 245.04191 * 1 2 3 31 31 H 1.08997 * 109.46759 * 184.62752 * 4 3 2 32 32 H 1.08997 * 109.47611 * 304.63478 * 4 3 2 33 33 H 1.09000 * 109.46639 * 64.63528 * 4 3 2 34 34 H 1.08997 * 109.52430 * 229.11641 * 5 3 2 35 35 H 1.09009 * 109.57270 * 108.95644 * 5 3 2 36 36 H 1.08997 * 109.62702 * 9.08512 * 12 11 9 37 37 H 1.08997 * 109.63111 * 248.50117 * 12 11 9 38 38 H 1.09001 * 109.49415 * 173.79215 * 13 12 11 39 39 H 1.09001 * 109.49167 * 293.86813 * 13 12 11 40 40 H 1.08996 * 109.47379 * 193.79459 * 15 14 13 41 41 H 1.09000 * 109.46906 * 313.79954 * 15 14 13 42 42 H 0.97006 * 120.00288 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.49457 * 303.14381 * 24 14 13 44 44 H 1.09004 * 109.51365 * 183.07458 * 24 14 13 45 45 H 1.08996 * 109.62781 * 350.91783 * 25 11 9 46 46 H 1.09004 * 109.62301 * 111.49975 * 25 11 9 47 47 H 1.09003 * 109.77678 * 57.54391 * 26 6 5 48 48 H 1.09005 * 109.78007 * 178.34913 * 26 6 5 49 49 H 1.09005 * 109.30956 * 281.31348 * 27 2 1 50 50 H 1.08996 * 109.31172 * 40.72997 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1086 1.1463 0.0000 4 6 1.2631 2.3936 0.0188 5 6 3.6036 1.3025 -0.0183 6 7 4.2285 -0.0050 0.2291 7 6 5.2835 -0.1327 1.0580 8 8 5.7979 -1.2196 1.2221 9 6 5.8200 1.0638 1.7748 10 8 5.3916 2.1691 1.5153 11 7 6.7795 0.9154 2.7095 12 6 7.4284 2.0867 3.3179 13 6 7.3692 1.9391 4.8421 14 7 7.9409 0.6421 5.2277 15 6 8.0607 0.5329 6.6878 16 6 6.6948 0.3253 7.2898 17 1 5.8350 0.2021 6.6481 18 6 6.5430 0.2927 8.6598 19 7 5.3510 0.1120 9.1851 20 14 8.0302 0.5065 9.7697 21 1 8.2178 1.9479 10.0739 22 1 7.8162 -0.2424 11.0340 23 1 9.2392 -0.0159 9.0836 24 6 7.1547 -0.4710 4.6794 25 6 7.2052 -0.4223 3.1486 26 6 3.6575 -1.1689 -0.4710 27 6 2.2041 -1.3278 0.0006 28 1 -0.3634 1.0236 -0.0903 29 1 -0.3633 -0.5902 -0.8413 30 1 -0.3633 -0.4337 0.9318 31 1 1.9060 3.2696 -0.0664 32 1 0.5652 2.3722 -0.8182 33 1 0.7065 2.4411 0.9548 34 1 3.9061 2.0038 0.7593 35 1 3.9196 1.6788 -0.9913 36 1 6.9035 2.9934 3.0172 37 1 8.4682 2.1381 2.9952 38 1 7.9411 2.7417 5.3077 39 1 6.3319 1.9921 5.1726 40 1 8.7003 -0.3136 6.9376 41 1 8.4979 1.4486 7.0860 42 1 5.2441 0.0894 10.1490 43 1 6.1205 -0.3845 5.0122 44 1 7.5708 -1.4166 5.0270 45 1 6.5327 -1.1743 2.7359 46 1 8.2236 -0.6120 2.8095 47 1 3.6824 -1.0004 -1.5476 48 1 4.2279 -2.0643 -0.2238 49 1 2.1930 -1.7403 1.0095 50 1 1.6815 -2.0096 -0.6703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119005494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:25 Heat of formation + Delta-G solvation = -7.184338 kcal Electronic energy + Delta-G solvation = -30272.954226 eV Core-core repulsion = 26302.022050 eV Total energy + Delta-G solvation = -3970.932176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15284 -39.38871 -38.14868 -37.71367 -35.13207 -34.20708 -32.37769 -32.27756 -30.76905 -29.11875 -28.67205 -27.35265 -26.18743 -24.78475 -23.89181 -23.22177 -22.55539 -21.41537 -20.23567 -19.11057 -17.66512 -17.15895 -16.90885 -16.65867 -16.25720 -15.77203 -15.29930 -14.98342 -14.72836 -14.55027 -14.48458 -14.40921 -14.18471 -13.93562 -13.79827 -13.40649 -13.14192 -13.03895 -12.66596 -12.51855 -12.42882 -12.39821 -12.23518 -11.97797 -11.82376 -11.73540 -11.45456 -11.34566 -11.09924 -10.82487 -10.78231 -10.60793 -10.31925 -10.21590 -10.06224 -9.51565 -9.12885 -8.90866 -8.69228 -8.63332 -8.49160 -7.30285 -6.14397 -4.15487 1.41386 1.95247 2.24164 3.18492 3.24490 3.32520 3.34855 3.36234 4.13088 4.35712 4.45259 4.57281 4.73121 4.84188 4.92429 5.14337 5.17421 5.18383 5.28985 5.33321 5.34953 5.41079 5.44919 5.47176 5.54023 5.59091 5.67552 5.71051 5.74469 5.77998 5.79751 5.82792 5.89884 5.99815 6.02320 6.23920 6.32381 6.41019 6.57841 6.58988 6.72492 6.78918 6.84157 7.00878 7.05281 7.33746 7.49182 7.68134 7.92925 7.97949 8.00514 8.39736 8.87641 9.47727 10.98241 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002933 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.010273 B = 9543.286566 C =10113.566316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C -0.140 4.140 4 C -0.114 4.114 5 C 0.108 3.892 6 N -0.584 5.584 7 C 0.515 3.485 8 O -0.512 6.512 9 C 0.507 3.493 10 O -0.527 6.527 11 N -0.567 5.567 12 C 0.112 3.888 13 C 0.047 3.953 14 N -0.535 5.535 15 C 0.155 3.845 16 C -0.556 4.556 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.263 1.263 24 C 0.049 3.951 25 C 0.074 3.926 26 C 0.108 3.892 27 C -0.095 4.095 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.153 0.847 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.031 0.969 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.050 0.950 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.282 1.023 -21.601 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.132 4.132 3 C -0.141 4.141 4 C -0.171 4.171 5 C -0.013 4.013 6 N -0.317 5.317 7 C 0.299 3.701 8 O -0.389 6.389 9 C 0.291 3.709 10 O -0.407 6.407 11 N -0.298 5.298 12 C -0.010 4.010 13 C -0.083 4.083 14 N -0.259 5.259 15 C 0.029 3.971 16 C -0.595 4.595 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.080 4.080 25 C -0.047 4.047 26 C -0.014 4.014 27 C -0.133 4.133 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.169 0.831 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.100 0.900 45 H 0.149 0.851 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.117 0.883 49 H 0.097 0.903 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.817 0.967 -21.650 22.200 hybrid contribution -0.256 0.089 1.208 1.238 sum -5.073 1.055 -20.442 21.088 Atomic orbital electron populations 1.21104 0.92453 1.03035 1.01900 1.20515 0.95871 0.94182 1.02666 1.21055 0.95302 0.95264 1.02438 1.20852 0.98976 0.95293 1.01988 1.21704 0.89039 0.85248 1.05305 1.48036 1.29936 1.10228 1.43458 1.20147 0.80692 0.89237 0.80055 1.90525 1.58341 1.28177 1.61863 1.19918 0.80823 0.88900 0.81300 1.90418 1.57318 1.26952 1.66052 1.48112 1.35322 1.09860 1.36488 1.22007 0.97451 0.87834 0.93704 1.22291 0.99879 0.93567 0.92533 1.62455 1.48736 1.00963 1.13741 1.20188 0.96933 0.96888 0.83124 1.21717 0.94028 1.51059 0.92647 0.90608 1.24980 0.95693 0.94116 0.98201 1.69926 1.22211 1.49493 1.11896 0.86787 0.83730 0.78552 0.80276 1.20218 1.21277 1.18786 1.22339 0.98336 0.95698 0.91658 1.23095 1.02528 0.83259 0.95819 1.21906 0.93643 0.89593 0.96246 1.20757 0.94406 0.95391 1.02729 0.91063 0.91987 0.91724 0.91771 0.91440 0.91324 0.83097 0.90504 0.89007 0.90562 0.90185 0.93492 0.95085 0.95736 0.92627 0.93151 0.89961 0.85052 0.90987 0.90575 0.88259 0.90287 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.65 36.00 0.35 -0.67 16 2 C -0.13 -1.29 5.86 -100.99 -0.59 -1.88 16 3 C -0.14 -1.44 5.92 -100.82 -0.60 -2.04 16 4 C -0.11 -0.96 8.38 36.01 0.30 -0.66 16 5 C 0.11 1.24 5.79 -5.10 -0.03 1.21 16 6 N -0.58 -7.29 2.96 -174.31 -0.52 -7.81 16 7 C 0.51 7.64 7.65 -11.59 -0.09 7.56 16 8 O -0.51 -8.17 12.67 5.49 0.07 -8.10 16 9 C 0.51 8.07 7.67 -11.59 -0.09 7.98 16 10 O -0.53 -8.59 12.57 5.50 0.07 -8.52 16 11 N -0.57 -9.21 3.01 -172.97 -0.52 -9.73 16 12 C 0.11 1.74 6.62 -3.60 -0.02 1.71 16 13 C 0.05 0.86 5.36 -3.70 -0.02 0.84 16 14 N -0.54 -10.83 4.83 -235.76 -1.14 -11.97 16 15 C 0.16 3.64 4.27 -4.97 -0.02 3.62 16 16 C -0.56 -15.26 8.47 -34.44 -0.29 -15.56 16 17 H 0.08 2.28 6.11 -52.49 -0.32 1.96 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 20 Si 0.88 21.14 27.38 -169.99 -4.65 16.49 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.26 -6.08 6.68 56.52 0.38 -5.70 16 24 C 0.05 0.94 4.98 -3.70 -0.02 0.93 16 25 C 0.07 1.22 6.13 -3.60 -0.02 1.20 16 26 C 0.11 1.08 6.54 -3.26 -0.02 1.06 16 27 C -0.10 -0.88 5.98 -27.91 -0.17 -1.05 16 28 H 0.07 0.51 5.16 -51.93 -0.27 0.25 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 7.94 -51.93 -0.41 0.11 16 32 H 0.07 0.47 7.10 -51.93 -0.37 0.10 16 33 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 34 H 0.15 2.04 4.38 -54.70 -0.24 1.80 16 35 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.09 1.36 7.04 -51.93 -0.37 1.00 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.38 7.95 -51.93 -0.41 0.97 16 39 H 0.05 1.00 7.72 -51.93 -0.40 0.60 16 40 H 0.03 0.74 7.53 -51.93 -0.39 0.35 16 41 H 0.02 0.57 7.06 -51.93 -0.37 0.20 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.05 1.13 6.22 -51.93 -0.32 0.81 16 44 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 45 H 0.13 2.18 4.39 -54.48 -0.24 1.94 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.10 1.03 7.07 -51.93 -0.37 0.66 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -31.13 378.13 -9.50 -40.62 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.85 Total: 3.49 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.43 Total: 6.21 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -1.40 Total: -55.90 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.14 Total: -16.61 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.65 Total: 16.49 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.13 -9.50 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119005494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.438 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds