Wall clock time and date at job start Tue Mar 31 2020 19:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29461 * 117.69241 * 2 1 4 4 C 1.50700 * 118.17116 * 0.81146 * 3 2 1 5 5 C 1.50318 * 123.65202 * 180.83620 * 3 2 1 6 6 N 1.47005 * 109.16741 * 349.02648 * 5 3 2 7 7 C 1.34777 * 121.37119 * 222.94880 * 6 5 3 8 8 O 1.21356 * 119.99421 * 181.56579 * 7 6 5 9 9 C 1.49446 * 120.00443 * 1.56599 * 7 6 5 10 10 O 1.21348 * 119.99822 * 352.92517 * 9 7 6 11 11 N 1.34774 * 120.00335 * 172.91977 * 9 7 6 12 12 C 1.47076 * 120.88326 * 173.05894 * 11 9 7 13 13 C 1.53246 * 108.52196 * 128.79513 * 12 11 9 14 14 N 1.46893 * 109.33947 * 53.82591 * 13 12 11 15 15 C 1.46908 * 110.99840 * 172.74678 * 14 13 12 16 16 C 1.50702 * 109.46758 * 73.79425 * 15 14 13 17 17 H 1.07994 * 119.99905 * 4.76821 * 16 15 14 18 18 C 1.37878 * 119.99648 * 184.76463 * 16 15 14 19 19 N 1.31508 * 119.99937 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00055 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47185 * 89.99757 * 20 18 16 22 22 H 1.48497 * 109.47415 * 209.99609 * 20 18 16 23 23 H 1.48497 * 109.47272 * 330.00009 * 20 18 16 24 24 C 1.46895 * 111.27287 * 296.89615 * 14 13 12 25 25 C 1.47086 * 120.87805 * 353.03385 * 11 9 7 26 26 C 1.47338 * 117.25103 * 43.21306 * 6 5 3 27 27 C 1.49972 * 117.70060 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47755 * 5.04189 * 1 2 3 29 29 H 1.08998 * 109.46897 * 125.04873 * 1 2 3 30 30 H 1.09006 * 109.46865 * 245.04191 * 1 2 3 31 31 H 1.08997 * 109.46759 * 184.62752 * 4 3 2 32 32 H 1.08997 * 109.47611 * 304.63478 * 4 3 2 33 33 H 1.09000 * 109.46639 * 64.63528 * 4 3 2 34 34 H 1.08997 * 109.52430 * 229.11641 * 5 3 2 35 35 H 1.09009 * 109.57270 * 108.95644 * 5 3 2 36 36 H 1.08997 * 109.62702 * 9.08512 * 12 11 9 37 37 H 1.08997 * 109.63111 * 248.50117 * 12 11 9 38 38 H 1.09001 * 109.49415 * 173.79215 * 13 12 11 39 39 H 1.09001 * 109.49167 * 293.86813 * 13 12 11 40 40 H 1.08996 * 109.47379 * 193.79459 * 15 14 13 41 41 H 1.09000 * 109.46906 * 313.79954 * 15 14 13 42 42 H 0.97006 * 120.00288 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.49457 * 303.14381 * 24 14 13 44 44 H 1.09004 * 109.51365 * 183.07458 * 24 14 13 45 45 H 1.08996 * 109.62781 * 350.91783 * 25 11 9 46 46 H 1.09004 * 109.62301 * 111.49975 * 25 11 9 47 47 H 1.09003 * 109.77678 * 57.54391 * 26 6 5 48 48 H 1.09005 * 109.78007 * 178.34913 * 26 6 5 49 49 H 1.09005 * 109.30956 * 281.31348 * 27 2 1 50 50 H 1.08996 * 109.31172 * 40.72997 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1086 1.1463 0.0000 4 6 1.2631 2.3936 0.0188 5 6 3.6036 1.3025 -0.0183 6 7 4.2285 -0.0050 0.2291 7 6 5.2835 -0.1327 1.0580 8 8 5.7979 -1.2196 1.2221 9 6 5.8200 1.0638 1.7748 10 8 5.3916 2.1691 1.5153 11 7 6.7795 0.9154 2.7095 12 6 7.4284 2.0867 3.3179 13 6 7.3692 1.9391 4.8421 14 7 7.9409 0.6421 5.2277 15 6 8.0607 0.5329 6.6878 16 6 6.6948 0.3253 7.2898 17 1 5.8350 0.2021 6.6481 18 6 6.5430 0.2927 8.6598 19 7 5.3510 0.1120 9.1851 20 14 8.0302 0.5065 9.7697 21 1 8.2178 1.9479 10.0739 22 1 7.8162 -0.2424 11.0340 23 1 9.2392 -0.0159 9.0836 24 6 7.1547 -0.4710 4.6794 25 6 7.2052 -0.4223 3.1486 26 6 3.6575 -1.1689 -0.4710 27 6 2.2041 -1.3278 0.0006 28 1 -0.3634 1.0236 -0.0903 29 1 -0.3633 -0.5902 -0.8413 30 1 -0.3633 -0.4337 0.9318 31 1 1.9060 3.2696 -0.0664 32 1 0.5652 2.3722 -0.8182 33 1 0.7065 2.4411 0.9548 34 1 3.9061 2.0038 0.7593 35 1 3.9196 1.6788 -0.9913 36 1 6.9035 2.9934 3.0172 37 1 8.4682 2.1381 2.9952 38 1 7.9411 2.7417 5.3077 39 1 6.3319 1.9921 5.1726 40 1 8.7003 -0.3136 6.9376 41 1 8.4979 1.4486 7.0860 42 1 5.2441 0.0894 10.1490 43 1 6.1205 -0.3845 5.0122 44 1 7.5708 -1.4166 5.0270 45 1 6.5327 -1.1743 2.7359 46 1 8.2236 -0.6120 2.8095 47 1 3.6824 -1.0004 -1.5476 48 1 4.2279 -2.0643 -0.2238 49 1 2.1930 -1.7403 1.0095 50 1 1.6815 -2.0096 -0.6703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119005494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:24 Heat of formation + Delta-G solvation = -28.187133 kcal Electronic energy + Delta-G solvation = -30273.864975 eV Core-core repulsion = 26302.022050 eV Total energy + Delta-G solvation = -3971.842925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.31558 -40.51811 -39.21243 -39.14767 -36.41016 -35.42976 -34.34609 -33.15541 -32.20372 -30.58636 -29.78104 -28.13793 -27.74583 -26.06583 -24.92935 -24.42651 -23.96130 -22.86511 -21.55774 -20.48727 -19.12388 -18.48978 -18.33263 -17.79797 -17.45041 -16.84617 -16.52393 -16.30534 -16.12500 -15.92614 -15.89294 -15.58408 -15.41891 -15.04575 -14.90193 -14.67760 -14.45813 -14.19119 -13.92524 -13.87583 -13.75234 -13.32563 -13.17810 -13.11591 -13.05916 -12.76756 -12.69304 -12.58239 -12.41244 -12.38196 -12.25178 -12.07306 -11.85278 -11.64918 -11.57371 -11.43017 -10.80987 -10.26624 -10.01721 -9.85395 -9.41241 -9.07533 -8.33290 -6.40027 0.20544 1.10206 1.20257 1.35586 1.37443 1.49680 1.97635 2.19881 2.32796 2.95574 3.02049 3.22572 3.66859 3.81529 3.92160 3.94980 4.03069 4.15202 4.23899 4.31036 4.36710 4.46874 4.48543 4.51423 4.57573 4.64282 4.68711 4.73107 4.78094 4.81660 4.87443 4.89442 4.92587 4.97430 5.02718 5.04886 5.07103 5.08958 5.15665 5.15861 5.22166 5.39759 5.45473 5.57268 5.86568 5.96470 6.07207 6.17256 6.24513 6.32525 6.51023 6.67266 6.78571 7.27498 8.82925 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002933 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.010273 B = 9543.286566 C =10113.566316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.136 4.136 3 C -0.156 4.156 4 C -0.111 4.111 5 C 0.108 3.892 6 N -0.579 5.579 7 C 0.509 3.491 8 O -0.529 6.529 9 C 0.503 3.497 10 O -0.533 6.533 11 N -0.576 5.576 12 C 0.121 3.879 13 C 0.048 3.952 14 N -0.525 5.525 15 C 0.161 3.839 16 C -0.556 4.556 17 H 0.032 0.968 18 C 0.010 3.990 19 N -0.949 5.949 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.242 1.242 24 C 0.054 3.946 25 C 0.090 3.910 26 C 0.105 3.895 27 C -0.095 4.095 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.006 0.994 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.266 0.734 43 H 0.008 0.992 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.062 0.938 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 1.366 -23.282 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C -0.157 4.157 4 C -0.168 4.168 5 C -0.013 4.013 6 N -0.310 5.310 7 C 0.293 3.707 8 O -0.408 6.408 9 C 0.287 3.713 10 O -0.413 6.413 11 N -0.307 5.307 12 C -0.001 4.001 13 C -0.081 4.081 14 N -0.248 5.248 15 C 0.034 3.966 16 C -0.595 4.595 17 H 0.050 0.950 18 C -0.188 4.188 19 N -0.589 5.589 20 Si 0.776 3.224 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.165 1.165 24 C -0.076 4.076 25 C -0.031 4.031 26 C -0.016 4.016 27 C -0.132 4.132 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.114 0.886 39 H 0.025 0.975 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.100 0.900 45 H 0.149 0.851 46 H 0.110 0.890 47 H 0.118 0.882 48 H 0.112 0.888 49 H 0.081 0.919 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.614 1.326 -23.381 23.696 hybrid contribution -0.788 -0.018 1.646 1.825 sum -4.402 1.308 -21.734 22.214 Atomic orbital electron populations 1.21125 0.91024 1.03867 1.02340 1.20787 0.97072 0.94086 1.01714 1.21162 0.94664 0.96358 1.03488 1.20853 0.99002 0.94456 1.02496 1.21667 0.90034 0.84341 1.05229 1.48186 1.28934 1.11521 1.42405 1.19993 0.81507 0.88617 0.80592 1.90503 1.59226 1.28347 1.62708 1.20205 0.80438 0.89359 0.81295 1.90439 1.57179 1.27343 1.66325 1.48204 1.35719 1.09879 1.36945 1.21981 0.99029 0.87943 0.91138 1.22348 0.97551 0.93123 0.95085 1.62495 1.48700 1.01936 1.11704 1.20080 0.94324 0.97315 0.84928 1.21954 0.94840 1.50201 0.92480 0.95009 1.25977 0.99010 0.93794 1.00019 1.70091 1.24999 1.51422 1.12382 0.85626 0.80009 0.79000 0.77786 1.19104 1.21226 1.16504 1.22295 0.95647 0.95556 0.94057 1.22928 1.03644 0.83595 0.92979 1.22138 0.93791 0.88400 0.97281 1.20790 0.94144 0.95813 1.02453 0.90341 0.90338 0.92161 0.91752 0.89603 0.91777 0.85199 0.88982 0.88250 0.87942 0.88592 0.97509 0.94676 0.94653 0.92516 0.97338 0.89954 0.85121 0.89023 0.88182 0.88761 0.91949 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 9.65 71.24 0.69 -1.09 16 2 C -0.14 -2.47 5.86 -15.14 -0.09 -2.56 16 3 C -0.16 -3.05 5.92 -15.04 -0.09 -3.14 16 4 C -0.11 -1.74 8.38 71.24 0.60 -1.15 16 5 C 0.11 2.40 5.79 85.42 0.49 2.90 16 6 N -0.58 -14.11 2.96 -823.76 -2.44 -16.55 16 7 C 0.51 15.10 7.65 87.27 0.67 15.77 16 8 O -0.53 -16.84 12.67 -3.27 -0.04 -16.88 16 9 C 0.50 16.01 7.67 87.27 0.67 16.68 16 10 O -0.53 -17.33 12.57 -3.24 -0.04 -17.37 16 11 N -0.58 -18.55 3.01 -819.51 -2.47 -21.02 16 12 C 0.12 3.61 6.62 86.35 0.57 4.18 16 13 C 0.05 1.77 5.36 86.39 0.46 2.24 16 14 N -0.53 -21.12 4.83 -899.82 -4.35 -25.46 16 15 C 0.16 7.47 4.27 85.56 0.37 7.83 16 16 C -0.56 -31.53 8.47 25.60 0.22 -31.31 16 17 H 0.03 2.04 6.11 -2.91 -0.02 2.03 16 18 C 0.01 0.58 5.47 84.66 0.46 1.04 16 19 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 20 Si 0.95 43.39 27.38 68.60 1.88 45.27 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.24 -10.11 6.68 99.48 0.66 -9.44 16 24 C 0.05 2.13 4.98 86.38 0.43 2.57 16 25 C 0.09 2.93 6.13 86.35 0.53 3.46 16 26 C 0.10 1.95 6.54 86.43 0.57 2.52 16 27 C -0.09 -1.61 5.98 29.83 0.18 -1.44 16 28 H 0.08 0.98 5.16 -2.39 -0.01 0.96 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.99 7.94 -2.39 -0.02 0.97 16 32 H 0.09 1.01 7.10 -2.39 -0.02 1.00 16 33 H 0.06 1.06 7.90 -2.39 -0.02 1.04 16 34 H 0.13 3.53 4.38 -46.32 -0.20 3.33 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.10 2.84 7.04 -2.39 -0.02 2.83 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.10 3.21 7.95 -2.39 -0.02 3.19 16 39 H 0.01 0.29 7.72 -2.39 -0.02 0.28 16 40 H 0.04 1.62 7.53 -2.39 -0.02 1.60 16 41 H 0.04 1.58 7.06 -2.39 -0.02 1.56 16 42 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 43 H 0.01 0.40 6.22 -2.39 -0.01 0.39 16 44 H 0.08 3.22 8.11 -2.39 -0.02 3.20 16 45 H 0.13 4.39 4.39 -42.71 -0.19 4.20 16 46 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 47 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.09 1.88 7.07 -2.38 -0.02 1.86 16 49 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -69.60 378.13 0.10 -69.50 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.54 Total: 23.19 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 6.72 Total: 18.50 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -8.95 Total: -122.20 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.08 Total: -34.25 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Total: -69.60 0.10 -69.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119005494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.308 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds