Wall clock time and date at job start Tue Mar 31 2020 19:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34785 * 116.99465 * 2 1 4 4 O 1.21545 * 120.00244 * 0.02562 * 3 2 1 5 5 C 1.47114 * 119.99711 * 179.97438 * 3 2 1 6 6 C 1.46739 * 127.02559 * 0.25735 * 5 3 2 7 7 C 1.34429 * 106.37795 * 180.12622 * 6 5 3 8 8 C 1.50699 * 125.45995 * 179.91761 * 7 6 5 9 9 N 1.46898 * 109.47163 * 264.69014 * 8 7 6 10 10 C 1.46905 * 110.99904 * 169.99688 * 9 8 7 11 11 C 1.53237 * 109.36102 * 172.76116 * 10 9 8 12 12 H 1.08994 * 109.63372 * 294.11393 * 11 10 9 13 13 C 1.52998 * 109.62889 * 173.52937 * 11 10 9 14 14 N 1.47080 * 108.52065 * 53.82207 * 11 10 9 15 15 C 1.36938 * 120.88334 * 128.78921 * 14 11 10 16 16 H 1.07996 * 120.00188 * 333.43376 * 15 14 11 17 17 C 1.38817 * 119.99927 * 153.43468 * 15 14 11 18 18 N 1.31617 * 119.99771 * 342.98103 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 162.98875 * 17 15 14 20 20 H 1.48497 * 109.47178 * 89.99823 * 19 17 15 21 21 H 1.48499 * 109.47003 * 209.99535 * 19 17 15 22 22 H 1.48499 * 109.47049 * 329.99754 * 19 17 15 23 23 C 1.47084 * 118.23599 * 308.81117 * 14 11 10 24 24 H 1.08999 * 109.63012 * 170.89069 * 23 14 11 25 25 C 1.52991 * 109.63154 * 291.27901 * 23 14 11 26 26 C 1.46894 * 111.01875 * 45.68314 * 9 8 7 27 27 N 1.36434 * 109.08217 * 359.65248 * 7 6 5 28 28 H 0.97001 * 124.80847 * 180.19752 * 27 7 6 29 29 C 1.34628 * 110.38068 * 0.23208 * 27 7 6 30 30 C 1.50694 * 125.89546 * 179.97438 * 29 27 7 31 31 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47297 * 299.99544 * 1 2 3 33 33 H 1.09002 * 109.47290 * 60.00232 * 1 2 3 34 34 H 1.08006 * 126.81579 * 0.02562 * 6 5 3 35 35 H 1.09003 * 109.46775 * 144.69593 * 8 7 6 36 36 H 1.08994 * 109.47078 * 24.69628 * 8 7 6 37 37 H 1.09004 * 109.48864 * 52.79245 * 10 9 8 38 38 H 1.08991 * 109.49238 * 292.73853 * 10 9 8 39 39 H 1.08998 * 109.46878 * 60.00370 * 13 11 10 40 40 H 1.09002 * 109.47441 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47183 * 300.00025 * 13 11 10 42 42 H 0.97008 * 120.00248 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46920 * 60.00038 * 25 23 14 44 44 H 1.08997 * 109.47289 * 179.97438 * 25 23 14 45 45 H 1.08998 * 109.47148 * 300.00265 * 25 23 14 46 46 H 1.09007 * 109.47116 * 67.26546 * 26 9 8 47 47 H 1.09004 * 109.51733 * 307.21404 * 26 9 8 48 48 H 1.09004 * 109.47538 * 90.01799 * 30 29 27 49 49 H 1.09005 * 109.47244 * 210.01731 * 30 29 27 50 50 H 1.09002 * 109.47277 * 330.01626 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4018 2.2203 0.0005 5 6 3.5329 1.2781 0.0006 6 6 4.4767 0.1544 -0.0041 7 6 5.7081 0.6937 0.0013 8 6 7.0013 -0.0800 0.0010 9 7 7.4840 -0.2274 1.3806 10 6 8.6076 -1.1715 1.4471 11 6 9.1967 -1.1611 2.8617 12 1 9.6436 -0.1881 3.0652 13 6 10.2595 -2.2549 2.9838 14 7 8.1119 -1.4169 3.8214 15 6 8.2333 -2.3911 4.7761 16 1 8.8773 -3.2405 4.6021 17 6 7.5286 -2.2869 5.9676 18 7 7.0190 -1.1293 6.3316 19 14 7.3039 -3.7896 7.0542 20 1 8.4312 -3.8773 8.0169 21 1 6.0245 -3.6748 7.7993 22 1 7.2775 -5.0112 6.2104 23 6 6.8931 -0.5990 3.7283 24 1 6.1272 -1.0066 4.3881 25 6 7.2085 0.8417 4.1354 26 6 6.3947 -0.6314 2.2795 27 7 5.5994 2.0537 0.0010 28 1 6.3493 2.6691 0.0015 29 6 4.3041 2.4206 0.0006 30 6 3.7867 3.8359 0.0008 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 4.2309 -0.8973 -0.0090 35 1 7.7451 0.4558 -0.5888 36 1 6.8348 -1.0658 -0.4331 37 1 9.3745 -0.8750 0.7315 38 1 8.2546 -2.1744 1.2074 39 1 11.0535 -2.0724 2.2598 40 1 10.6765 -2.2456 3.9909 41 1 9.8054 -3.2262 2.7880 42 1 6.5262 -1.0566 7.1640 43 1 7.9695 1.2490 3.4697 44 1 6.3039 1.4455 4.0650 45 1 7.5771 0.8570 5.1610 46 1 6.0721 -1.6419 2.0284 47 1 5.5564 0.0563 2.1678 48 1 3.6620 4.1774 -1.0269 49 1 2.8260 3.8715 0.5146 50 1 4.4978 4.4827 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119516157.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:44 Heat of formation + Delta-G solvation = -8.384868 kcal Electronic energy + Delta-G solvation = -30488.882943 eV Core-core repulsion = 26517.898709 eV Total energy + Delta-G solvation = -3970.984235 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.44182 -39.82226 -38.41225 -36.26374 -34.94955 -32.62780 -31.86520 -31.30727 -31.02145 -28.45422 -27.84898 -27.28883 -25.92606 -25.19859 -23.86062 -22.77150 -21.80293 -20.75498 -20.25755 -19.61058 -18.53676 -17.38653 -16.46538 -16.26424 -16.10627 -15.90545 -15.54580 -14.83320 -14.41270 -14.30812 -14.19100 -13.84118 -13.50105 -13.46548 -13.23858 -13.15193 -13.03127 -12.82716 -12.52595 -12.39972 -12.12625 -11.96394 -11.79762 -11.51649 -11.45562 -11.17591 -10.90770 -10.87088 -10.73861 -10.57355 -10.52624 -10.43260 -10.33279 -9.99545 -9.88393 -9.42809 -9.18285 -8.85077 -8.43028 -8.12782 -7.72359 -6.58538 -5.71708 -3.12544 1.49773 2.33480 2.73720 3.27778 3.33487 3.39841 3.47779 3.49046 4.45986 4.54316 4.70831 4.81069 5.03479 5.07832 5.13698 5.15432 5.29461 5.33886 5.42611 5.44931 5.48015 5.57501 5.63678 5.81036 5.83458 5.87238 5.91554 6.11330 6.11851 6.17198 6.28741 6.32732 6.41554 6.46153 6.50486 6.68549 6.74649 6.86984 6.95602 6.98107 7.05048 7.13176 7.26598 7.38389 7.52861 7.57326 7.77769 7.88783 7.96093 7.99788 8.50690 9.29173 9.91885 10.49631 11.35680 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003471 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.598395 B = 8065.475385 C = 9174.948049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.354 6.354 3 C 0.544 3.456 4 O -0.528 6.528 5 C -0.232 4.232 6 C -0.137 4.137 7 C 0.031 3.969 8 C 0.116 3.884 9 N -0.528 5.528 10 C 0.049 3.951 11 C 0.173 3.827 12 H 0.032 0.968 13 C -0.138 4.138 14 N -0.585 5.585 15 C -0.249 4.249 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.199 3.801 24 H 0.094 0.906 25 C -0.132 4.132 26 C 0.040 3.960 27 N -0.529 5.529 28 H 0.419 0.581 29 C 0.120 3.880 30 C -0.096 4.096 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.148 0.852 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.251 0.749 43 H 0.030 0.970 44 H 0.017 0.983 45 H 0.072 0.928 46 H 0.023 0.977 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.876 5.833 -15.567 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.270 6.270 3 C 0.392 3.608 4 O -0.419 6.419 5 C -0.240 4.240 6 C -0.161 4.161 7 C -0.078 4.078 8 C -0.012 4.012 9 N -0.253 5.253 10 C -0.081 4.081 11 C 0.066 3.934 12 H 0.049 0.951 13 C -0.196 4.196 14 N -0.308 5.308 15 C -0.378 4.378 16 H 0.087 0.913 17 C -0.196 4.196 18 N -0.543 5.543 19 Si 0.727 3.273 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.092 3.908 24 H 0.111 0.889 25 C -0.191 4.191 26 C -0.089 4.089 27 N -0.124 5.124 28 H 0.257 0.743 29 C 0.000 4.000 30 C -0.153 4.153 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.091 0.909 46 H 0.042 0.958 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.117 0.883 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.879 6.611 -15.245 17.318 hybrid contribution -0.356 -1.254 0.398 1.363 sum -5.235 5.358 -14.846 16.629 Atomic orbital electron populations 1.23203 0.76675 1.03407 1.02265 1.86595 1.22877 1.32905 1.84609 1.20132 0.87876 0.80984 0.71820 1.90773 1.66871 1.35922 1.48375 1.19225 0.88835 0.93389 1.22541 1.21823 0.89979 0.98183 1.06127 1.20061 0.96455 0.82197 1.09131 1.20666 0.90728 0.97293 0.92557 1.62151 1.09334 1.49359 1.04408 1.22688 0.92559 0.93055 0.99757 1.20428 0.89192 0.96032 0.87785 0.95085 1.21801 0.97408 0.99084 1.01263 1.44301 1.12026 1.40133 1.34382 1.19171 1.26190 0.98455 0.94024 0.91268 1.24979 1.02086 0.96166 0.96363 1.70011 1.39797 1.21656 1.22804 0.86392 0.77270 0.83106 0.80560 1.21619 1.21701 1.20708 1.20390 0.89742 0.90954 0.89712 0.88861 1.21923 0.98077 0.96899 1.02180 1.22945 0.92655 0.97424 0.95872 1.41469 1.06886 1.07356 1.56707 0.74306 1.20479 0.83014 0.95732 1.00787 1.20595 1.02865 0.88496 1.03379 0.88317 0.92007 0.92206 0.83465 0.90599 0.92905 0.92251 0.95177 0.94291 0.91857 0.92908 0.93848 0.95125 0.96360 0.90927 0.95848 0.91296 0.90355 0.88252 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.35 -4.89 10.47 -40.72 -0.43 -5.32 16 3 C 0.54 8.18 7.95 34.33 0.27 8.45 16 4 O -0.53 -8.42 14.67 -19.30 -0.28 -8.70 16 5 C -0.23 -3.36 6.33 -103.01 -0.65 -4.02 16 6 C -0.14 -1.96 9.61 -37.49 -0.36 -2.32 16 7 C 0.03 0.41 5.06 -81.89 -0.41 -0.01 16 8 C 0.12 1.52 5.80 -4.98 -0.03 1.49 16 9 N -0.53 -8.76 4.28 -235.76 -1.01 -9.77 16 10 C 0.05 0.83 4.87 -3.70 -0.02 0.81 16 11 C 0.17 3.48 3.26 -67.49 -0.22 3.26 16 12 H 0.03 0.68 7.63 -51.93 -0.40 0.28 16 13 C -0.14 -2.50 7.93 37.16 0.29 -2.21 16 14 N -0.59 -14.05 2.73 -157.01 -0.43 -14.48 16 15 C -0.25 -6.55 8.72 -15.06 -0.13 -6.68 16 16 H 0.07 1.79 6.16 -52.49 -0.32 1.46 16 17 C 0.00 0.06 4.94 -17.43 -0.09 -0.02 16 18 N -0.90 -25.21 9.76 55.49 0.54 -24.66 16 19 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.20 4.63 2.34 -67.49 -0.16 4.47 16 24 H 0.09 2.51 6.12 -51.93 -0.32 2.19 16 25 C -0.13 -3.00 8.97 37.15 0.33 -2.67 16 26 C 0.04 0.77 4.42 -3.70 -0.02 0.76 16 27 N -0.53 -6.11 5.89 -5.20 -0.03 -6.14 16 28 H 0.42 3.79 8.96 -40.82 -0.37 3.43 16 29 C 0.12 1.50 7.22 -81.51 -0.59 0.91 16 30 C -0.10 -0.96 9.90 36.00 0.36 -0.60 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.15 2.05 8.06 -52.48 -0.42 1.62 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 1.24 7.57 -51.93 -0.39 0.85 16 41 H 0.05 0.98 7.54 -51.93 -0.39 0.59 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.03 0.66 7.10 -51.93 -0.37 0.29 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 1.88 6.88 -51.93 -0.36 1.52 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 1.33 5.77 -51.93 -0.30 1.03 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.10 1.15 6.51 -51.93 -0.34 0.81 16 50 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -30.74 390.81 -9.30 -40.05 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -8.18 Total: 3.60 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.35 Total: 3.09 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.93 Total: -55.06 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.71 Total: -14.02 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.74 -9.30 -40.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119516157.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.662 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds