Wall clock time and date at job start Tue Mar 31 2020 19:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34785 * 116.99465 * 2 1 4 4 O 1.21545 * 120.00244 * 0.02562 * 3 2 1 5 5 C 1.47114 * 119.99711 * 179.97438 * 3 2 1 6 6 C 1.46739 * 127.02559 * 0.25735 * 5 3 2 7 7 C 1.34429 * 106.37795 * 180.12622 * 6 5 3 8 8 C 1.50699 * 125.45995 * 179.91761 * 7 6 5 9 9 N 1.46898 * 109.47163 * 264.69014 * 8 7 6 10 10 C 1.46905 * 110.99904 * 169.99688 * 9 8 7 11 11 C 1.53237 * 109.36102 * 172.76116 * 10 9 8 12 12 H 1.08994 * 109.63372 * 294.11393 * 11 10 9 13 13 C 1.52998 * 109.62889 * 173.52937 * 11 10 9 14 14 N 1.47080 * 108.52065 * 53.82207 * 11 10 9 15 15 C 1.36938 * 120.88334 * 128.78921 * 14 11 10 16 16 H 1.07996 * 120.00188 * 333.43376 * 15 14 11 17 17 C 1.38817 * 119.99927 * 153.43468 * 15 14 11 18 18 N 1.31617 * 119.99771 * 342.98103 * 17 15 14 19 19 Si 1.86798 * 119.99957 * 162.98875 * 17 15 14 20 20 H 1.48497 * 109.47178 * 89.99823 * 19 17 15 21 21 H 1.48499 * 109.47003 * 209.99535 * 19 17 15 22 22 H 1.48499 * 109.47049 * 329.99754 * 19 17 15 23 23 C 1.47084 * 118.23599 * 308.81117 * 14 11 10 24 24 H 1.08999 * 109.63012 * 170.89069 * 23 14 11 25 25 C 1.52991 * 109.63154 * 291.27901 * 23 14 11 26 26 C 1.46894 * 111.01875 * 45.68314 * 9 8 7 27 27 N 1.36434 * 109.08217 * 359.65248 * 7 6 5 28 28 H 0.97001 * 124.80847 * 180.19752 * 27 7 6 29 29 C 1.34628 * 110.38068 * 0.23208 * 27 7 6 30 30 C 1.50694 * 125.89546 * 179.97438 * 29 27 7 31 31 H 1.09003 * 109.46594 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47297 * 299.99544 * 1 2 3 33 33 H 1.09002 * 109.47290 * 60.00232 * 1 2 3 34 34 H 1.08006 * 126.81579 * 0.02562 * 6 5 3 35 35 H 1.09003 * 109.46775 * 144.69593 * 8 7 6 36 36 H 1.08994 * 109.47078 * 24.69628 * 8 7 6 37 37 H 1.09004 * 109.48864 * 52.79245 * 10 9 8 38 38 H 1.08991 * 109.49238 * 292.73853 * 10 9 8 39 39 H 1.08998 * 109.46878 * 60.00370 * 13 11 10 40 40 H 1.09002 * 109.47441 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47183 * 300.00025 * 13 11 10 42 42 H 0.97008 * 120.00248 * 179.97438 * 18 17 15 43 43 H 1.09002 * 109.46920 * 60.00038 * 25 23 14 44 44 H 1.08997 * 109.47289 * 179.97438 * 25 23 14 45 45 H 1.08998 * 109.47148 * 300.00265 * 25 23 14 46 46 H 1.09007 * 109.47116 * 67.26546 * 26 9 8 47 47 H 1.09004 * 109.51733 * 307.21404 * 26 9 8 48 48 H 1.09004 * 109.47538 * 90.01799 * 30 29 27 49 49 H 1.09005 * 109.47244 * 210.01731 * 30 29 27 50 50 H 1.09002 * 109.47277 * 330.01626 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2010 0.0000 4 8 1.4018 2.2203 0.0005 5 6 3.5329 1.2781 0.0006 6 6 4.4767 0.1544 -0.0041 7 6 5.7081 0.6937 0.0013 8 6 7.0013 -0.0800 0.0010 9 7 7.4840 -0.2274 1.3806 10 6 8.6076 -1.1715 1.4471 11 6 9.1967 -1.1611 2.8617 12 1 9.6436 -0.1881 3.0652 13 6 10.2595 -2.2549 2.9838 14 7 8.1119 -1.4169 3.8214 15 6 8.2333 -2.3911 4.7761 16 1 8.8773 -3.2405 4.6021 17 6 7.5286 -2.2869 5.9676 18 7 7.0190 -1.1293 6.3316 19 14 7.3039 -3.7896 7.0542 20 1 8.4312 -3.8773 8.0169 21 1 6.0245 -3.6748 7.7993 22 1 7.2775 -5.0112 6.2104 23 6 6.8931 -0.5990 3.7283 24 1 6.1272 -1.0066 4.3881 25 6 7.2085 0.8417 4.1354 26 6 6.3947 -0.6314 2.2795 27 7 5.5994 2.0537 0.0010 28 1 6.3493 2.6691 0.0015 29 6 4.3041 2.4206 0.0006 30 6 3.7867 3.8359 0.0008 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 4.2309 -0.8973 -0.0090 35 1 7.7451 0.4558 -0.5888 36 1 6.8348 -1.0658 -0.4331 37 1 9.3745 -0.8750 0.7315 38 1 8.2546 -2.1744 1.2074 39 1 11.0535 -2.0724 2.2598 40 1 10.6765 -2.2456 3.9909 41 1 9.8054 -3.2262 2.7880 42 1 6.5262 -1.0566 7.1640 43 1 7.9695 1.2490 3.4697 44 1 6.3039 1.4455 4.0650 45 1 7.5771 0.8570 5.1610 46 1 6.0721 -1.6419 2.0284 47 1 5.5564 0.0563 2.1678 48 1 3.6620 4.1774 -1.0269 49 1 2.8260 3.8715 0.5146 50 1 4.4978 4.4827 0.5148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119516157.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:43 Heat of formation + Delta-G solvation = -27.018793 kcal Electronic energy + Delta-G solvation = -30489.690971 eV Core-core repulsion = 26517.898709 eV Total energy + Delta-G solvation = -3971.792262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.45316 -40.89775 -39.94147 -37.34692 -36.48558 -34.29128 -33.35548 -32.46355 -32.29725 -29.91288 -28.99474 -28.48844 -27.48751 -26.51697 -25.51107 -23.95753 -23.17965 -22.27326 -21.34060 -20.65104 -20.29759 -18.49211 -17.98183 -17.38126 -17.32759 -17.14842 -16.88301 -16.35847 -15.78888 -15.61540 -15.56358 -15.48030 -14.87560 -14.76944 -14.44832 -14.32210 -14.09661 -14.04117 -13.65391 -13.46102 -13.41107 -13.27101 -13.01186 -12.95531 -12.86107 -12.72684 -12.64699 -12.44576 -12.21943 -12.19968 -12.13159 -11.84011 -11.72661 -11.60509 -11.45267 -11.20649 -10.96646 -10.42633 -9.89027 -9.29711 -8.97279 -8.50535 -7.75313 -5.16885 0.45459 1.28258 1.46829 1.49843 1.57163 1.79885 2.24772 2.34063 2.56424 3.16723 3.39703 3.65772 3.69831 3.89956 4.10353 4.18423 4.27722 4.33414 4.35817 4.38573 4.40236 4.52119 4.57667 4.65494 4.67274 4.71481 4.72196 4.74499 4.83476 4.86938 4.91594 4.93570 5.02394 5.06396 5.11219 5.16781 5.27210 5.34273 5.47440 5.48010 5.59397 5.69814 5.73276 5.78805 5.93980 6.02430 6.23462 6.30285 6.51084 6.54400 6.88469 7.27921 8.00126 8.52113 9.29541 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.003471 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.598395 B = 8065.475385 C = 9174.948049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.538 3.462 4 O -0.546 6.546 5 C -0.265 4.265 6 C -0.151 4.151 7 C 0.028 3.972 8 C 0.120 3.880 9 N -0.529 5.529 10 C 0.058 3.942 11 C 0.164 3.836 12 H 0.019 0.981 13 C -0.129 4.129 14 N -0.601 5.601 15 C -0.249 4.249 16 H 0.072 0.928 17 C -0.050 4.050 18 N -0.924 5.924 19 Si 0.952 3.048 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.275 1.275 23 C 0.196 3.804 24 H 0.049 0.951 25 C -0.111 4.111 26 C 0.062 3.938 27 N -0.518 5.518 28 H 0.434 0.566 29 C 0.131 3.869 30 C -0.093 4.093 31 H 0.127 0.873 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.024 0.976 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.243 0.757 43 H 0.041 0.959 44 H 0.024 0.976 45 H 0.035 0.965 46 H 0.009 0.991 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 6.167 -17.941 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.283 6.283 3 C 0.387 3.613 4 O -0.439 6.439 5 C -0.273 4.273 6 C -0.175 4.175 7 C -0.081 4.081 8 C -0.007 4.007 9 N -0.254 5.254 10 C -0.071 4.071 11 C 0.058 3.942 12 H 0.037 0.963 13 C -0.187 4.187 14 N -0.325 5.325 15 C -0.379 4.379 16 H 0.090 0.910 17 C -0.245 4.245 18 N -0.570 5.570 19 Si 0.782 3.218 20 H -0.216 1.216 21 H -0.226 1.226 22 H -0.200 1.200 23 C 0.090 3.910 24 H 0.067 0.933 25 C -0.170 4.170 26 C -0.067 4.067 27 N -0.114 5.114 28 H 0.274 0.726 29 C 0.009 3.991 30 C -0.150 4.150 31 H 0.145 0.855 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.116 0.884 38 H 0.042 0.958 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.054 0.946 46 H 0.027 0.973 47 H 0.088 0.912 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.640 6.936 -17.654 19.314 hybrid contribution -0.726 -1.336 1.080 1.866 sum -4.367 5.599 -16.574 18.031 Atomic orbital electron populations 1.23498 0.74816 1.05397 1.02484 1.86579 1.24858 1.32521 1.84352 1.20339 0.88307 0.81074 0.71533 1.90748 1.67308 1.36356 1.49502 1.19468 0.88910 0.94438 1.24485 1.21897 0.90688 0.98162 1.06782 1.20041 0.96105 0.82874 1.09088 1.20742 0.91373 0.98189 0.90394 1.62079 1.08339 1.48830 1.06146 1.22558 0.93376 0.93085 0.98118 1.20671 0.88802 0.96015 0.88720 0.96284 1.21711 0.97782 0.98064 1.01143 1.44537 1.13425 1.39872 1.34662 1.19466 1.25200 0.99049 0.94229 0.91003 1.25612 1.02889 0.98168 0.97855 1.70180 1.40914 1.23102 1.22833 0.85503 0.76501 0.80763 0.79025 1.21564 1.22587 1.19978 1.20244 0.88757 0.90592 0.91439 0.93262 1.21671 0.98381 0.97012 0.99980 1.22500 0.93375 0.96738 0.94103 1.41446 1.07082 1.07066 1.55779 0.72592 1.20842 0.83117 0.96352 0.98803 1.20648 1.02438 0.87400 1.04560 0.85507 0.92269 0.91529 0.83976 0.87341 0.92133 0.88363 0.95752 0.90344 0.94103 0.93500 0.94788 0.94039 0.95657 0.94599 0.97286 0.91172 0.88625 0.90018 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.57 113.37 1.20 1.81 16 2 O -0.37 -10.20 10.47 -56.97 -0.60 -10.80 16 3 C 0.54 16.29 7.95 70.15 0.56 16.85 16 4 O -0.55 -17.50 14.67 19.69 0.29 -17.21 16 5 C -0.26 -7.55 6.33 -18.82 -0.12 -7.67 16 6 C -0.15 -4.18 9.61 23.62 0.23 -3.95 16 7 C 0.03 0.69 5.06 40.97 0.21 0.89 16 8 C 0.12 2.73 5.80 85.56 0.50 3.22 16 9 N -0.53 -16.12 4.28 -899.82 -3.85 -19.97 16 10 C 0.06 1.77 4.87 86.38 0.42 2.19 16 11 C 0.16 6.34 3.26 44.96 0.15 6.48 16 12 H 0.02 0.80 7.63 -2.39 -0.02 0.78 16 13 C -0.13 -4.44 7.93 71.98 0.57 -3.87 16 14 N -0.60 -28.97 2.73 -650.66 -1.78 -30.75 16 15 C -0.25 -13.27 8.72 84.03 0.73 -12.54 16 16 H 0.07 3.72 6.16 -2.91 -0.02 3.70 16 17 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 18 N -0.92 -53.82 9.76 21.65 0.21 -53.61 16 19 Si 0.95 45.19 29.59 68.60 2.03 47.22 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.20 9.28 2.34 44.96 0.11 9.39 16 24 H 0.05 2.77 6.12 -2.39 -0.01 2.75 16 25 C -0.11 -5.12 8.97 71.98 0.65 -4.47 16 26 C 0.06 2.37 4.42 86.39 0.38 2.75 16 27 N -0.52 -10.52 5.89 -170.38 -1.00 -11.53 16 28 H 0.43 6.24 8.96 -92.71 -0.83 5.41 16 29 C 0.13 3.03 7.22 42.03 0.30 3.33 16 30 C -0.09 -1.67 9.90 71.23 0.71 -0.97 16 31 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 37 H 0.10 2.32 8.11 -2.39 -0.02 2.30 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 41 H 0.05 1.65 7.54 -2.39 -0.02 1.63 16 42 H 0.24 14.00 8.31 -92.70 -0.77 13.23 16 43 H 0.04 1.77 7.10 -2.39 -0.02 1.75 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.03 1.89 6.88 -2.39 -0.02 1.88 16 46 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 47 H 0.07 2.66 5.77 -2.39 -0.01 2.65 16 48 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 49 H 0.08 1.82 6.51 -2.38 -0.02 1.81 16 50 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.12 390.81 2.41 -66.71 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.11 Total: 18.83 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 7.00 Total: 11.12 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.42 Total: -115.86 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.31 Total: -28.01 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.12 2.41 -66.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119516157.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.687 kcal (2) G-P(sol) polarization free energy of solvation -69.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds