Wall clock time and date at job start Tue Mar 31 2020 19:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38096 * 119.58475 * 2 1 4 4 C 1.38778 * 119.28643 * 180.24661 * 3 2 1 5 5 C 1.50706 * 120.75797 * 179.75452 * 4 3 2 6 6 C 1.38425 * 118.48791 * 359.48038 * 4 3 2 7 7 C 1.50705 * 120.44309 * 180.22819 * 6 4 3 8 8 C 1.50699 * 109.47044 * 90.00053 * 7 6 4 9 9 O 1.21274 * 119.99879 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99568 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99813 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47090 * 34.99643 * 11 10 8 13 13 C 1.53003 * 109.46745 * 275.00071 * 11 10 8 14 14 C 1.52992 * 109.47487 * 154.99912 * 11 10 8 15 15 C 1.53003 * 109.47137 * 295.00005 * 14 11 10 16 16 H 1.08991 * 109.47172 * 304.99752 * 15 14 11 17 17 C 1.53005 * 109.47235 * 184.99508 * 15 14 11 18 18 N 1.46500 * 109.47093 * 64.99689 * 15 14 11 19 19 C 1.36939 * 120.00138 * 204.99571 * 18 15 14 20 20 H 1.08001 * 119.99773 * 0.02562 * 19 18 15 21 21 C 1.38816 * 119.99840 * 179.97438 * 19 18 15 22 22 N 1.31619 * 119.99778 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99985 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47385 * 89.99962 * 23 21 19 25 25 H 1.48503 * 109.46758 * 209.99656 * 23 21 19 26 26 H 1.48495 * 109.47222 * 329.99506 * 23 21 19 27 27 C 1.38876 * 119.11053 * 0.25412 * 6 4 3 28 28 O 1.35681 * 119.67985 * 179.97438 * 27 6 4 29 29 N 1.31932 * 119.58412 * 179.71568 * 2 1 3 30 30 H 1.08993 * 109.47165 * 270.27858 * 1 2 3 31 31 H 1.08997 * 109.46931 * 30.28209 * 1 2 3 32 32 H 1.09005 * 109.46986 * 150.27479 * 1 2 3 33 33 H 1.08004 * 120.35310 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47015 * 269.72402 * 5 4 3 35 35 H 1.09000 * 109.46646 * 29.71554 * 5 4 3 36 36 H 1.09000 * 109.47248 * 149.72272 * 5 4 3 37 37 H 1.09003 * 109.46656 * 210.00265 * 7 6 4 38 38 H 1.08996 * 109.47097 * 329.99909 * 7 6 4 39 39 H 0.96999 * 120.00770 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.47273 * 299.99304 * 13 11 10 41 41 H 1.09002 * 109.47152 * 60.00126 * 13 11 10 42 42 H 1.09004 * 109.46770 * 179.97438 * 13 11 10 43 43 H 1.09001 * 109.46963 * 54.99520 * 14 11 10 44 44 H 1.09001 * 109.47792 * 175.00005 * 14 11 10 45 45 H 1.08997 * 109.46636 * 60.00112 * 17 15 14 46 46 H 1.08996 * 109.46816 * 179.97438 * 17 15 14 47 47 H 1.08998 * 109.47133 * 300.00566 * 17 15 14 48 48 H 0.97010 * 119.99852 * 25.00818 * 18 15 14 49 49 H 0.96991 * 119.99899 * 180.02562 * 22 21 19 50 50 H 0.96708 * 113.99766 * 89.99830 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5765 1.1937 -0.0052 5 6 4.3540 2.4847 -0.0109 6 6 4.2305 -0.0263 0.0008 7 6 5.7364 -0.0856 0.0007 8 6 6.2387 -0.0981 1.4214 9 8 5.4514 -0.0630 2.3432 10 7 7.5628 -0.1495 1.6675 11 6 8.0511 -0.1622 3.0487 12 1 7.3559 -0.7215 3.6747 13 6 8.1596 1.2741 3.5645 14 6 9.4284 -0.8267 3.0966 15 6 9.2986 -2.2986 2.6996 16 1 8.5598 -2.7833 3.3378 17 6 10.6515 -2.9933 2.8671 18 7 8.8718 -2.3914 1.3012 19 6 8.2070 -3.5046 0.8606 20 1 7.9970 -4.3139 1.5441 21 6 7.8023 -3.5922 -0.4644 22 7 7.1628 -4.6619 -0.8877 23 14 8.1650 -2.1920 -1.6464 24 1 9.4824 -2.4189 -2.2932 25 1 7.1063 -2.1352 -2.6862 26 1 8.1947 -0.9089 -0.8995 27 6 3.4803 -1.1950 0.0064 28 8 4.1093 -2.3972 0.0117 29 7 2.1583 -1.1473 0.0057 30 1 -0.3633 0.0050 1.0276 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5096 33 1 1.6478 2.1357 -0.0004 34 1 4.5418 2.7912 -1.0400 35 1 3.7787 3.2575 0.4990 36 1 5.3036 2.3393 0.5039 37 1 6.0642 -0.9917 -0.5088 38 1 6.1342 0.7868 -0.5177 39 1 8.1924 -0.1780 0.9302 40 1 8.8549 1.8334 2.9385 41 1 7.1784 1.7475 3.5304 42 1 8.5226 1.2646 4.5923 43 1 10.1000 -0.3212 2.4027 44 1 9.8305 -0.7572 4.1073 45 1 10.9689 -2.9243 3.9075 46 1 10.5589 -4.0420 2.5847 47 1 11.3903 -2.5086 2.2289 48 1 9.0604 -1.6643 0.6873 49 1 6.8803 -4.7233 -1.8135 50 1 4.2919 -2.7416 0.8968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135262360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:15 Heat of formation + Delta-G solvation = -34.932932 kcal Electronic energy + Delta-G solvation = -31211.837240 eV Core-core repulsion = 27239.701795 eV Total energy + Delta-G solvation = -3972.135445 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.66685 -39.32953 -37.04434 -36.77852 -34.71197 -34.21881 -32.36594 -31.73044 -31.10102 -29.82620 -29.01231 -27.67796 -26.47086 -25.69499 -23.34604 -22.58372 -21.54069 -20.60282 -20.52130 -19.57070 -17.90220 -17.56966 -17.06332 -16.73152 -16.18035 -15.37624 -15.04141 -14.72569 -14.64361 -14.35043 -13.98872 -13.63903 -13.40893 -13.38169 -13.27405 -13.13002 -12.85417 -12.80750 -12.60004 -12.47764 -12.24740 -12.10875 -12.05064 -11.82582 -11.74423 -11.71868 -11.42463 -11.12803 -11.07193 -10.83435 -10.75079 -10.53902 -10.26708 -10.01435 -9.60894 -9.53161 -9.21930 -9.14767 -9.00568 -8.56327 -8.37564 -7.25105 -5.76105 -3.10585 1.20197 1.38158 3.07482 3.07573 3.31330 3.39945 3.54080 3.79725 4.07330 4.52418 4.63378 4.66556 4.92897 4.99330 5.06401 5.16053 5.27251 5.28992 5.34358 5.40594 5.44707 5.48325 5.49709 5.54618 5.56103 5.58968 5.71500 5.76004 5.82099 5.85010 5.90374 5.96040 6.01734 6.11269 6.12810 6.20872 6.22675 6.30588 6.38133 6.41875 6.44981 6.76081 6.76909 6.93422 6.99081 7.92314 7.97157 7.99400 8.24943 8.41930 8.67249 9.18598 9.90751 10.10547 11.42452 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.004897 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.575423 B = 5716.428147 C = 6976.239154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.146 3.854 3 C -0.191 4.191 4 C -0.017 4.017 5 C -0.116 4.116 6 C -0.132 4.132 7 C -0.105 4.105 8 C 0.532 3.468 9 O -0.550 6.550 10 N -0.703 5.703 11 C 0.148 3.852 12 H 0.086 0.914 13 C -0.162 4.162 14 C -0.136 4.136 15 C 0.176 3.824 16 H 0.056 0.944 17 C -0.165 4.165 18 N -0.741 5.741 19 C -0.242 4.242 20 H 0.089 0.911 21 C 0.014 3.986 22 N -0.923 5.923 23 Si 0.876 3.124 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.284 1.284 27 C 0.341 3.659 28 O -0.466 6.466 29 N -0.508 5.508 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.398 0.602 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.353 0.647 49 H 0.260 0.740 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 15.997 4.450 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.008 3.992 3 C -0.211 4.211 4 C -0.025 4.025 5 C -0.172 4.172 6 C -0.136 4.136 7 C -0.145 4.145 8 C 0.318 3.682 9 O -0.428 6.428 10 N -0.357 5.357 11 C 0.044 3.956 12 H 0.105 0.895 13 C -0.220 4.220 14 C -0.175 4.175 15 C 0.067 3.933 16 H 0.074 0.926 17 C -0.225 4.225 18 N -0.386 5.386 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.183 4.183 22 N -0.570 5.570 23 Si 0.709 3.291 24 H -0.217 1.217 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.162 3.838 28 O -0.273 6.273 29 N -0.228 5.228 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.113 0.887 39 H 0.236 0.764 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.186 0.814 49 H 0.070 0.930 50 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -4.435 15.005 4.494 16.280 hybrid contribution 1.243 1.397 -0.967 2.105 sum -3.192 16.403 3.527 17.079 Atomic orbital electron populations 1.20696 0.88887 1.03272 1.02982 1.20931 0.96547 0.87396 0.94322 1.21659 0.93766 0.99087 1.06618 1.19985 0.93688 0.94639 0.94172 1.20826 1.00183 0.93659 1.02565 1.20179 0.95500 0.92920 1.04993 1.20684 0.91833 1.05774 0.96191 1.20110 0.82410 0.75260 0.90387 1.90643 1.55438 1.50631 1.46135 1.46136 1.06887 1.74071 1.08575 1.20850 0.95891 0.95381 0.83513 0.89542 1.22203 1.01906 0.97113 1.00810 1.22250 0.95593 0.97668 1.01995 1.20227 0.94260 0.91737 0.87092 0.92621 1.22400 0.99033 1.02089 0.98934 1.42808 1.69588 1.20415 1.05769 1.18998 1.28230 0.95304 0.94629 0.89343 1.24581 1.00480 0.96672 0.96549 1.69628 1.43667 1.27571 1.16149 0.86895 0.77728 0.82213 0.82278 1.21712 1.21481 1.21136 1.19023 0.86368 0.85757 0.92641 1.84828 1.75887 1.32358 1.34259 1.67047 1.09755 1.30426 1.15615 0.90462 0.90827 0.90478 0.84921 0.90490 0.90876 0.91101 0.86584 0.88671 0.76413 0.92902 0.92426 0.91960 0.91920 0.90408 0.94300 0.92359 0.93754 0.81363 0.92986 0.73263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.17 36.01 0.37 -0.72 16 2 C 0.15 2.19 6.78 -82.60 -0.56 1.63 16 3 C -0.19 -2.59 9.44 -39.43 -0.37 -2.97 16 4 C -0.02 -0.26 5.91 -104.35 -0.62 -0.87 16 5 C -0.12 -1.31 9.28 36.01 0.33 -0.97 16 6 C -0.13 -2.36 4.40 -104.31 -0.46 -2.82 16 7 C -0.10 -1.85 4.51 -29.03 -0.13 -1.98 16 8 C 0.53 9.65 7.47 -10.99 -0.08 9.56 16 9 O -0.55 -11.21 15.70 5.56 0.09 -11.13 16 10 N -0.70 -11.52 3.80 -53.81 -0.20 -11.73 16 11 C 0.15 2.17 2.57 -67.93 -0.17 2.00 16 12 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 13 C -0.16 -1.95 9.48 37.16 0.35 -1.60 16 14 C -0.14 -1.85 4.43 -26.73 -0.12 -1.97 16 15 C 0.18 3.05 2.89 -67.93 -0.20 2.85 16 16 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 17 C -0.16 -2.65 9.49 37.16 0.35 -2.30 16 18 N -0.74 -15.46 3.65 -53.42 -0.19 -15.65 16 19 C -0.24 -6.25 10.41 -15.06 -0.16 -6.41 16 20 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 21 C 0.01 0.37 5.50 -17.43 -0.10 0.28 16 22 N -0.92 -27.77 13.97 55.49 0.78 -26.99 16 23 Si 0.88 20.49 25.12 -169.99 -4.27 16.22 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -5.56 4.59 56.52 0.26 -5.31 16 27 C 0.34 6.75 7.72 -17.12 -0.13 6.62 16 28 O -0.47 -9.98 12.62 -18.74 -0.24 -10.22 16 29 N -0.51 -9.50 10.30 -9.55 -0.10 -9.60 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 37 H 0.12 2.37 4.39 -51.93 -0.23 2.15 16 38 H 0.10 1.40 6.81 -51.93 -0.35 1.05 16 39 H 0.40 6.49 5.10 -40.82 -0.21 6.28 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.35 7.08 3.78 -40.82 -0.15 6.93 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.41 7.96 9.06 45.56 0.41 8.37 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -32.85 395.95 -7.16 -40.02 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -7.30 Total: 22.77 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.69 Total: 0.34 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.28 Total: -63.97 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.15 Total: -21.34 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.27 Total: 16.22 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.85 -7.16 -40.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135262360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.085 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds