Wall clock time and date at job start Tue Mar 31 2020 19:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38096 * 119.58475 * 2 1 4 4 C 1.38778 * 119.28643 * 180.24661 * 3 2 1 5 5 C 1.50706 * 120.75797 * 179.75452 * 4 3 2 6 6 C 1.38425 * 118.48791 * 359.48038 * 4 3 2 7 7 C 1.50705 * 120.44309 * 180.22819 * 6 4 3 8 8 C 1.50699 * 109.47044 * 90.00053 * 7 6 4 9 9 O 1.21274 * 119.99879 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99568 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99813 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47090 * 34.99643 * 11 10 8 13 13 C 1.53003 * 109.46745 * 275.00071 * 11 10 8 14 14 C 1.52992 * 109.47487 * 154.99912 * 11 10 8 15 15 C 1.53003 * 109.47137 * 295.00005 * 14 11 10 16 16 H 1.08991 * 109.47172 * 304.99752 * 15 14 11 17 17 C 1.53005 * 109.47235 * 184.99508 * 15 14 11 18 18 N 1.46500 * 109.47093 * 64.99689 * 15 14 11 19 19 C 1.36939 * 120.00138 * 204.99571 * 18 15 14 20 20 H 1.08001 * 119.99773 * 0.02562 * 19 18 15 21 21 C 1.38816 * 119.99840 * 179.97438 * 19 18 15 22 22 N 1.31619 * 119.99778 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99985 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47385 * 89.99962 * 23 21 19 25 25 H 1.48503 * 109.46758 * 209.99656 * 23 21 19 26 26 H 1.48495 * 109.47222 * 329.99506 * 23 21 19 27 27 C 1.38876 * 119.11053 * 0.25412 * 6 4 3 28 28 O 1.35681 * 119.67985 * 179.97438 * 27 6 4 29 29 N 1.31932 * 119.58412 * 179.71568 * 2 1 3 30 30 H 1.08993 * 109.47165 * 270.27858 * 1 2 3 31 31 H 1.08997 * 109.46931 * 30.28209 * 1 2 3 32 32 H 1.09005 * 109.46986 * 150.27479 * 1 2 3 33 33 H 1.08004 * 120.35310 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47015 * 269.72402 * 5 4 3 35 35 H 1.09000 * 109.46646 * 29.71554 * 5 4 3 36 36 H 1.09000 * 109.47248 * 149.72272 * 5 4 3 37 37 H 1.09003 * 109.46656 * 210.00265 * 7 6 4 38 38 H 1.08996 * 109.47097 * 329.99909 * 7 6 4 39 39 H 0.96999 * 120.00770 * 0.02562 * 10 8 7 40 40 H 1.08994 * 109.47273 * 299.99304 * 13 11 10 41 41 H 1.09002 * 109.47152 * 60.00126 * 13 11 10 42 42 H 1.09004 * 109.46770 * 179.97438 * 13 11 10 43 43 H 1.09001 * 109.46963 * 54.99520 * 14 11 10 44 44 H 1.09001 * 109.47792 * 175.00005 * 14 11 10 45 45 H 1.08997 * 109.46636 * 60.00112 * 17 15 14 46 46 H 1.08996 * 109.46816 * 179.97438 * 17 15 14 47 47 H 1.08998 * 109.47133 * 300.00566 * 17 15 14 48 48 H 0.97010 * 119.99852 * 25.00818 * 18 15 14 49 49 H 0.96991 * 119.99899 * 180.02562 * 22 21 19 50 50 H 0.96708 * 113.99766 * 89.99830 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5765 1.1937 -0.0052 5 6 4.3540 2.4847 -0.0109 6 6 4.2305 -0.0263 0.0008 7 6 5.7364 -0.0856 0.0007 8 6 6.2387 -0.0981 1.4214 9 8 5.4514 -0.0630 2.3432 10 7 7.5628 -0.1495 1.6675 11 6 8.0511 -0.1622 3.0487 12 1 7.3559 -0.7215 3.6747 13 6 8.1596 1.2741 3.5645 14 6 9.4284 -0.8267 3.0966 15 6 9.2986 -2.2986 2.6996 16 1 8.5598 -2.7833 3.3378 17 6 10.6515 -2.9933 2.8671 18 7 8.8718 -2.3914 1.3012 19 6 8.2070 -3.5046 0.8606 20 1 7.9970 -4.3139 1.5441 21 6 7.8023 -3.5922 -0.4644 22 7 7.1628 -4.6619 -0.8877 23 14 8.1650 -2.1920 -1.6464 24 1 9.4824 -2.4189 -2.2932 25 1 7.1063 -2.1352 -2.6862 26 1 8.1947 -0.9089 -0.8995 27 6 3.4803 -1.1950 0.0064 28 8 4.1093 -2.3972 0.0117 29 7 2.1583 -1.1473 0.0057 30 1 -0.3633 0.0050 1.0276 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5096 33 1 1.6478 2.1357 -0.0004 34 1 4.5418 2.7912 -1.0400 35 1 3.7787 3.2575 0.4990 36 1 5.3036 2.3393 0.5039 37 1 6.0642 -0.9917 -0.5088 38 1 6.1342 0.7868 -0.5177 39 1 8.1924 -0.1780 0.9302 40 1 8.8549 1.8334 2.9385 41 1 7.1784 1.7475 3.5304 42 1 8.5226 1.2646 4.5923 43 1 10.1000 -0.3212 2.4027 44 1 9.8305 -0.7572 4.1073 45 1 10.9689 -2.9243 3.9075 46 1 10.5589 -4.0420 2.5847 47 1 11.3903 -2.5086 2.2289 48 1 9.0604 -1.6643 0.6873 49 1 6.8803 -4.7233 -1.8135 50 1 4.2919 -2.7416 0.8968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135262360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:14 Heat of formation + Delta-G solvation = -61.144133 kcal Electronic energy + Delta-G solvation = -31212.973843 eV Core-core repulsion = 27239.701795 eV Total energy + Delta-G solvation = -3973.272048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.93746 -40.67461 -38.47486 -38.24342 -36.03595 -35.62965 -34.11602 -33.03801 -32.50121 -31.19202 -30.44369 -28.65702 -27.61980 -26.87625 -25.27028 -23.86782 -22.75933 -21.99015 -21.75099 -21.00171 -19.52759 -19.35040 -18.32268 -18.12669 -17.46039 -16.71147 -16.55913 -16.26330 -15.97553 -15.90880 -15.16382 -15.01210 -14.95353 -14.59566 -14.43161 -14.19485 -14.14050 -14.05350 -13.86144 -13.75810 -13.50564 -13.39913 -13.16430 -13.01613 -12.86493 -12.83254 -12.67123 -12.56301 -12.49640 -12.40367 -12.30708 -12.03740 -11.76292 -11.60800 -11.44525 -10.97534 -10.90261 -10.44700 -10.37001 -9.95758 -9.62238 -9.15727 -7.92124 -5.22596 -0.04087 0.19484 1.18091 1.37389 1.47577 1.68863 2.26646 2.49739 2.53131 2.83740 3.41595 3.43899 3.62942 3.65698 3.80457 3.83869 3.84605 4.01644 4.13348 4.24207 4.33151 4.34585 4.39607 4.53429 4.55616 4.65063 4.68328 4.69692 4.77401 4.78539 4.81586 4.85780 4.90731 4.97884 5.05371 5.09059 5.09895 5.14748 5.19820 5.28714 5.36362 5.38973 5.60272 5.64585 5.69421 5.88080 6.28302 6.48257 6.58966 6.97546 7.18045 7.30215 7.92712 8.12500 9.29255 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011864 B = 0.004897 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.575423 B = 5716.428147 C = 6976.239154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.131 3.869 3 C -0.180 4.180 4 C -0.020 4.020 5 C -0.114 4.114 6 C -0.151 4.151 7 C -0.102 4.102 8 C 0.531 3.469 9 O -0.578 6.578 10 N -0.700 5.700 11 C 0.143 3.857 12 H 0.056 0.944 13 C -0.150 4.150 14 C -0.122 4.122 15 C 0.167 3.833 16 H 0.030 0.970 17 C -0.157 4.157 18 N -0.738 5.738 19 C -0.216 4.216 20 H 0.045 0.955 21 C -0.051 4.051 22 N -0.977 5.977 23 Si 0.939 3.061 24 H -0.290 1.290 25 H -0.311 1.311 26 H -0.230 1.230 27 C 0.300 3.700 28 O -0.491 6.491 29 N -0.543 5.543 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.180 0.820 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.400 0.600 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.361 0.639 49 H 0.249 0.751 50 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 21.239 5.121 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.006 4.006 3 C -0.199 4.199 4 C -0.027 4.027 5 C -0.170 4.170 6 C -0.154 4.154 7 C -0.142 4.142 8 C 0.318 3.682 9 O -0.459 6.459 10 N -0.352 5.352 11 C 0.039 3.961 12 H 0.074 0.926 13 C -0.208 4.208 14 C -0.161 4.161 15 C 0.059 3.941 16 H 0.048 0.952 17 C -0.216 4.216 18 N -0.384 5.384 19 C -0.347 4.347 20 H 0.064 0.936 21 C -0.243 4.243 22 N -0.627 5.627 23 Si 0.769 3.231 24 H -0.218 1.218 25 H -0.239 1.239 26 H -0.155 1.155 27 C 0.122 3.878 28 O -0.299 6.299 29 N -0.264 5.264 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.197 0.803 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.145 0.855 39 H 0.237 0.763 40 H 0.091 0.909 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.131 0.869 45 H 0.091 0.909 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.196 0.804 49 H 0.058 0.942 50 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -3.303 20.303 5.225 21.223 hybrid contribution 0.820 -0.272 -1.034 1.347 sum -2.482 20.030 4.191 20.614 Atomic orbital electron populations 1.20828 0.85884 1.04589 1.04167 1.21778 0.98577 0.87091 0.93199 1.22181 0.93485 1.00258 1.03966 1.20512 0.94714 0.94954 0.92565 1.20938 0.99647 0.92118 1.04299 1.20289 0.95531 0.93479 1.06148 1.20664 0.92284 1.05484 0.95789 1.20230 0.82769 0.74909 0.90331 1.90621 1.56218 1.52077 1.46946 1.46176 1.06293 1.73238 1.09500 1.21001 0.95690 0.97254 0.82117 0.92561 1.22091 1.01687 0.94653 1.02413 1.22180 0.95327 0.94034 1.04521 1.20465 0.94163 0.94967 0.84481 0.95192 1.22271 0.98220 0.99785 1.01337 1.42724 1.69104 1.18938 1.07620 1.18811 1.26816 0.95486 0.93621 0.93646 1.25269 1.01097 0.99379 0.98535 1.69853 1.46381 1.30607 1.15895 0.85829 0.76200 0.81599 0.79488 1.21801 1.23932 1.15474 1.19329 0.87271 0.85603 0.95592 1.84807 1.76610 1.34165 1.34285 1.67000 1.09601 1.32835 1.16948 0.89198 0.87238 0.91408 0.80305 0.88140 0.88266 0.91820 0.89716 0.85469 0.76252 0.90869 0.94034 0.89731 0.89708 0.86904 0.90944 0.95665 0.92525 0.80423 0.94159 0.73943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 10.17 71.24 0.72 -1.17 16 2 C 0.13 3.81 6.78 42.51 0.29 4.10 16 3 C -0.18 -4.34 9.44 22.37 0.21 -4.13 16 4 C -0.02 -0.55 5.91 -19.69 -0.12 -0.66 16 5 C -0.11 -2.11 9.28 71.24 0.66 -1.45 16 6 C -0.15 -5.42 4.40 -19.67 -0.09 -5.50 16 7 C -0.10 -3.57 4.51 29.10 0.13 -3.44 16 8 C 0.53 19.08 7.47 87.66 0.65 19.73 16 9 O -0.58 -23.91 15.70 -3.01 -0.05 -23.96 16 10 N -0.70 -21.75 3.80 -442.55 -1.68 -23.43 16 11 C 0.14 3.89 2.57 44.99 0.12 4.00 16 12 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 13 C -0.15 -3.07 9.48 71.98 0.68 -2.38 16 14 C -0.12 -2.87 4.43 30.59 0.14 -2.73 16 15 C 0.17 5.60 2.89 44.99 0.13 5.73 16 16 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 17 C -0.16 -4.75 9.49 71.98 0.68 -4.07 16 18 N -0.74 -30.63 3.65 -322.93 -1.18 -31.81 16 19 C -0.22 -11.70 10.41 84.03 0.87 -10.83 16 20 H 0.05 2.82 8.06 -2.91 -0.02 2.79 16 21 C -0.05 -2.91 5.50 84.86 0.47 -2.45 16 22 N -0.98 -62.82 13.97 21.65 0.30 -62.52 16 23 Si 0.94 43.45 25.12 68.60 1.72 45.18 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 26 H -0.23 -8.34 4.59 99.48 0.46 -7.89 16 27 C 0.30 12.56 7.72 84.78 0.65 13.22 16 28 O -0.49 -23.27 12.62 -89.99 -1.14 -24.40 16 29 N -0.54 -21.13 10.30 -296.97 -3.06 -24.19 16 30 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.32 8.08 -2.39 -0.02 1.30 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.06 1.30 6.55 -2.39 -0.02 1.28 16 37 H 0.08 3.53 4.39 -2.39 -0.01 3.52 16 38 H 0.13 3.45 6.81 -2.39 -0.02 3.43 16 39 H 0.40 11.88 5.10 -92.71 -0.47 11.41 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.36 13.81 3.78 -92.70 -0.35 13.46 16 49 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 50 H 0.40 18.05 9.06 -74.05 -0.67 17.38 16 Total: -1.00 -80.90 395.95 0.36 -80.53 By element: Atomic # 1 Polarization: 57.41 SS G_CDS: -0.77 Total: 56.63 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.21 Total: 7.97 kcal Atomic # 7 Polarization: -136.34 SS G_CDS: -5.62 Total: -141.95 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -1.18 Total: -48.36 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.72 Total: 45.18 kcal Total: -80.90 0.36 -80.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135262360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.390 kcal (2) G-P(sol) polarization free energy of solvation -80.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds