Wall clock time and date at job start Tue Mar 31 2020 19:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38086 * 119.58328 * 2 1 4 4 C 1.38781 * 119.28830 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.75917 * 179.97438 * 4 3 2 6 6 C 1.38416 * 118.48646 * 359.97438 * 4 3 2 7 7 C 1.50705 * 120.44604 * 179.97438 * 6 4 3 8 8 C 1.50707 * 109.46669 * 90.00330 * 7 6 4 9 9 O 1.21281 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 C 1.38876 * 119.11317 * 0.25749 * 6 4 3 28 28 O 1.35675 * 119.68801 * 179.72611 * 27 6 4 29 29 N 1.31937 * 119.58216 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46740 * 90.00394 * 1 2 3 31 31 H 1.09006 * 109.46824 * 210.00242 * 1 2 3 32 32 H 1.08999 * 109.47065 * 330.00363 * 1 2 3 33 33 H 1.08001 * 120.35849 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.47013 * 270.02514 * 5 4 3 35 35 H 1.08997 * 109.47092 * 30.01868 * 5 4 3 36 36 H 1.08993 * 109.47551 * 150.02242 * 5 4 3 37 37 H 1.08997 * 109.47232 * 330.00836 * 7 6 4 38 38 H 1.08997 * 109.47322 * 210.00090 * 7 6 4 39 39 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 42 42 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 43 43 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 44 44 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 45 45 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 46 46 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 47 47 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 48 48 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 49 49 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 50 50 H 0.96696 * 114.00769 * 89.99220 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3540 2.4847 0.0000 6 6 4.2305 -0.0263 0.0016 7 6 5.7364 -0.0855 0.0016 8 6 6.2382 -0.1041 1.4226 9 8 5.4506 -0.0728 2.3443 10 7 7.5623 -0.1555 1.6690 11 6 8.0501 -0.1742 3.0502 12 1 7.4009 0.4411 3.6731 13 6 8.0457 -1.6119 3.5733 14 6 9.4754 0.3805 3.0951 15 6 9.4614 1.8560 2.6907 16 1 8.7628 2.4003 3.3263 17 6 10.8645 2.4432 2.8553 18 7 9.0433 1.9749 1.2917 19 6 8.4677 3.1345 0.8453 20 1 8.3224 3.9615 1.5245 21 6 8.0710 3.2470 -0.4801 22 7 8.2531 2.2410 -1.3092 23 14 7.2865 4.8291 -1.0893 24 1 6.9623 4.6972 -2.5324 25 1 6.0410 5.0906 -0.3239 26 1 8.2326 5.9572 -0.8956 27 6 3.4803 -1.1950 -0.0034 28 8 4.1093 -2.3971 -0.0080 29 7 2.1584 -1.1474 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6478 2.1356 -0.0004 34 1 4.5414 2.7955 -1.0279 35 1 3.7789 3.2553 0.5133 36 1 5.3037 2.3372 0.5139 37 1 6.1344 0.7891 -0.5128 38 1 6.0644 -0.9895 -0.5114 39 1 8.1922 -0.1809 0.9317 40 1 8.4091 -1.6259 4.6009 41 1 7.0304 -2.0071 3.5413 42 1 8.6949 -2.2273 2.9503 43 1 10.1053 -0.1798 2.4042 44 1 9.8707 0.2847 4.1064 45 1 11.5631 1.8989 2.2197 46 1 10.8547 3.4942 2.5667 47 1 11.1757 2.3548 3.8961 48 1 9.1740 1.2322 0.6816 49 1 8.6608 1.4196 -0.9930 50 1 4.2915 -2.7492 0.8740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135262361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:19 Heat of formation + Delta-G solvation = -43.927788 kcal Electronic energy + Delta-G solvation = -31150.575985 eV Core-core repulsion = 27178.050494 eV Total energy + Delta-G solvation = -3972.525491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.62032 -39.23520 -37.08598 -36.93921 -34.67487 -34.15380 -32.57343 -31.71097 -30.91792 -29.58078 -28.32931 -27.35353 -26.45677 -25.61988 -23.56985 -22.61997 -21.47498 -20.53261 -20.39732 -19.56439 -18.12652 -17.47147 -16.95606 -16.54922 -16.01980 -15.44675 -15.11736 -14.84310 -14.48050 -14.09965 -14.01329 -13.69571 -13.44214 -13.30371 -13.21011 -12.98830 -12.82438 -12.73016 -12.46940 -12.21229 -12.14931 -12.02605 -11.80051 -11.70171 -11.66819 -11.52689 -11.27260 -11.19140 -11.04664 -10.78590 -10.56628 -10.47142 -10.17995 -10.06595 -9.43170 -9.25755 -9.19051 -9.05439 -9.01180 -8.47494 -8.35829 -7.08928 -6.17356 -3.17182 1.22802 1.48436 3.22424 3.42606 3.45699 3.56130 3.62342 3.78304 4.05517 4.56573 4.72338 4.88353 4.97364 5.15905 5.16482 5.25973 5.35026 5.40224 5.48917 5.52384 5.55870 5.56233 5.59178 5.65308 5.75736 5.83868 5.86755 5.88912 5.95871 6.01982 6.03847 6.10194 6.12223 6.24073 6.25985 6.31132 6.40987 6.41403 6.47589 6.52387 6.67716 6.74566 6.87153 6.93767 7.05862 7.67052 7.74353 8.05709 8.15986 8.64194 8.79014 9.11720 9.96697 10.13689 11.28524 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.004994 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.064597 B = 5605.452007 C = 7496.745317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.140 3.860 3 C -0.185 4.185 4 C -0.003 4.003 5 C -0.123 4.123 6 C -0.119 4.119 7 C -0.108 4.108 8 C 0.533 3.467 9 O -0.559 6.559 10 N -0.699 5.699 11 C 0.150 3.850 12 H 0.082 0.918 13 C -0.161 4.161 14 C -0.135 4.135 15 C 0.176 3.824 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.727 5.727 19 C -0.315 4.315 20 H 0.061 0.939 21 C -0.040 4.040 22 N -0.942 5.942 23 Si 1.060 2.940 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.298 1.298 27 C 0.322 3.678 28 O -0.482 6.482 29 N -0.512 5.512 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.100 0.900 39 H 0.399 0.601 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.053 0.947 47 H 0.036 0.964 48 H 0.361 0.639 49 H 0.250 0.750 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -5.345 5.387 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.003 3.997 3 C -0.205 4.205 4 C -0.010 4.010 5 C -0.179 4.179 6 C -0.123 4.123 7 C -0.148 4.148 8 C 0.320 3.680 9 O -0.439 6.439 10 N -0.351 5.351 11 C 0.046 3.954 12 H 0.100 0.900 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.066 3.934 16 H 0.066 0.934 17 C -0.223 4.223 18 N -0.372 5.372 19 C -0.446 4.446 20 H 0.079 0.921 21 C -0.237 4.237 22 N -0.588 5.588 23 Si 0.892 3.108 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.226 1.226 27 C 0.143 3.857 28 O -0.289 6.289 29 N -0.232 5.232 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.118 0.882 39 H 0.236 0.764 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.196 0.804 49 H 0.061 0.939 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.376 -5.110 4.250 9.928 hybrid contribution 1.782 -0.186 1.310 2.219 sum -5.594 -5.296 5.559 9.500 Atomic orbital electron populations 1.20677 0.88906 1.03220 1.02859 1.20849 0.96399 0.87322 0.95132 1.21779 0.94046 0.99135 1.05540 1.20213 0.93492 0.95372 0.91958 1.20968 1.00957 0.92548 1.03474 1.20201 0.95947 0.92528 1.03635 1.20662 0.91231 1.07155 0.95731 1.20253 0.82312 0.74834 0.90620 1.90630 1.55588 1.51174 1.46478 1.45953 1.06866 1.74060 1.08231 1.20788 0.95300 0.95608 0.83753 0.89969 1.22200 1.01991 0.97121 1.00682 1.22223 0.95328 0.98045 1.01736 1.20205 0.93598 0.92004 0.87602 0.93362 1.22406 0.99343 1.01821 0.98768 1.42478 1.73588 1.15913 1.05214 1.20009 1.35179 0.92987 0.96470 0.92109 1.25457 1.01780 1.04469 0.92019 1.70975 1.47184 1.04633 1.36031 0.83523 0.76124 0.74752 0.76435 1.20929 1.21882 1.22565 1.18788 0.86571 0.84763 0.95549 1.84693 1.76710 1.33703 1.33748 1.66892 1.09530 1.30673 1.16068 0.90582 0.90706 0.90731 0.84763 0.89999 0.91333 0.89170 0.84930 0.88163 0.76385 0.92154 0.92467 0.92802 0.91863 0.90768 0.93740 0.92820 0.94488 0.80450 0.93853 0.74654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.17 36.01 0.37 -0.71 16 2 C 0.14 2.14 6.78 -82.60 -0.56 1.58 16 3 C -0.19 -2.83 9.44 -39.44 -0.37 -3.20 16 4 C 0.00 -0.05 5.91 -104.36 -0.62 -0.67 16 5 C -0.12 -2.21 9.28 36.01 0.33 -1.87 16 6 C -0.12 -2.18 4.40 -104.32 -0.46 -2.64 16 7 C -0.11 -1.95 4.96 -29.03 -0.14 -2.09 16 8 C 0.53 9.89 7.47 -10.98 -0.08 9.81 16 9 O -0.56 -11.73 15.70 5.56 0.09 -11.64 16 10 N -0.70 -11.71 3.80 -53.81 -0.20 -11.92 16 11 C 0.15 2.30 2.58 -67.93 -0.17 2.13 16 12 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 13 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 14 C -0.13 -1.93 4.43 -26.73 -0.12 -2.05 16 15 C 0.18 3.14 2.89 -67.93 -0.20 2.94 16 16 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 17 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 18 N -0.73 -15.43 3.84 -53.43 -0.21 -15.64 16 19 C -0.32 -7.78 9.93 -15.06 -0.15 -7.93 16 20 H 0.06 1.56 7.83 -52.48 -0.41 1.15 16 21 C -0.04 -1.01 5.50 -17.43 -0.10 -1.11 16 22 N -0.94 -24.61 13.44 55.49 0.75 -23.87 16 23 Si 1.06 23.77 29.92 -169.99 -5.09 18.68 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.32 5.73 7.72 -17.12 -0.13 5.60 16 28 O -0.48 -7.62 12.62 -18.73 -0.24 -7.86 16 29 N -0.51 -8.92 10.30 -9.55 -0.10 -9.02 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.09 1.88 6.55 -51.93 -0.34 1.54 16 37 H 0.13 2.71 6.55 -51.93 -0.34 2.37 16 38 H 0.10 1.67 7.54 -51.93 -0.39 1.28 16 39 H 0.40 6.71 6.51 -40.82 -0.27 6.44 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.36 7.67 4.54 -40.82 -0.19 7.49 16 49 H 0.25 6.36 6.77 -40.82 -0.28 6.08 16 50 H 0.40 4.85 9.06 45.56 0.41 5.27 16 LS Contribution 406.18 15.07 6.12 6.12 Total: -1.00 -29.89 406.18 -7.89 -37.78 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -7.32 Total: 21.65 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.70 Total: -4.30 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.24 Total: -60.44 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.15 Total: -19.50 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.09 Total: 18.68 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.89 -7.89 -37.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135262361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.147 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds