Wall clock time and date at job start Tue Mar 31 2020 19:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38086 * 119.58328 * 2 1 4 4 C 1.38781 * 119.28830 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.75917 * 179.97438 * 4 3 2 6 6 C 1.38416 * 118.48646 * 359.97438 * 4 3 2 7 7 C 1.50705 * 120.44604 * 179.97438 * 6 4 3 8 8 C 1.50707 * 109.46669 * 90.00330 * 7 6 4 9 9 O 1.21281 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 C 1.38876 * 119.11317 * 0.25749 * 6 4 3 28 28 O 1.35675 * 119.68801 * 179.72611 * 27 6 4 29 29 N 1.31937 * 119.58216 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46740 * 90.00394 * 1 2 3 31 31 H 1.09006 * 109.46824 * 210.00242 * 1 2 3 32 32 H 1.08999 * 109.47065 * 330.00363 * 1 2 3 33 33 H 1.08001 * 120.35849 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.47013 * 270.02514 * 5 4 3 35 35 H 1.08997 * 109.47092 * 30.01868 * 5 4 3 36 36 H 1.08993 * 109.47551 * 150.02242 * 5 4 3 37 37 H 1.08997 * 109.47232 * 330.00836 * 7 6 4 38 38 H 1.08997 * 109.47322 * 210.00090 * 7 6 4 39 39 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 40 40 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 42 42 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 43 43 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 44 44 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 45 45 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 46 46 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 47 47 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 48 48 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 49 49 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 50 50 H 0.96696 * 114.00769 * 89.99220 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1937 0.0005 5 6 4.3540 2.4847 0.0000 6 6 4.2305 -0.0263 0.0016 7 6 5.7364 -0.0855 0.0016 8 6 6.2382 -0.1041 1.4226 9 8 5.4506 -0.0728 2.3443 10 7 7.5623 -0.1555 1.6690 11 6 8.0501 -0.1742 3.0502 12 1 7.4009 0.4411 3.6731 13 6 8.0457 -1.6119 3.5733 14 6 9.4754 0.3805 3.0951 15 6 9.4614 1.8560 2.6907 16 1 8.7628 2.4003 3.3263 17 6 10.8645 2.4432 2.8553 18 7 9.0433 1.9749 1.2917 19 6 8.4677 3.1345 0.8453 20 1 8.3224 3.9615 1.5245 21 6 8.0710 3.2470 -0.4801 22 7 8.2531 2.2410 -1.3092 23 14 7.2865 4.8291 -1.0893 24 1 6.9623 4.6972 -2.5324 25 1 6.0410 5.0906 -0.3239 26 1 8.2326 5.9572 -0.8956 27 6 3.4803 -1.1950 -0.0034 28 8 4.1093 -2.3971 -0.0080 29 7 2.1584 -1.1474 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6478 2.1356 -0.0004 34 1 4.5414 2.7955 -1.0279 35 1 3.7789 3.2553 0.5133 36 1 5.3037 2.3372 0.5139 37 1 6.1344 0.7891 -0.5128 38 1 6.0644 -0.9895 -0.5114 39 1 8.1922 -0.1809 0.9317 40 1 8.4091 -1.6259 4.6009 41 1 7.0304 -2.0071 3.5413 42 1 8.6949 -2.2273 2.9503 43 1 10.1053 -0.1798 2.4042 44 1 9.8707 0.2847 4.1064 45 1 11.5631 1.8989 2.2197 46 1 10.8547 3.4942 2.5667 47 1 11.1757 2.3548 3.8961 48 1 9.1740 1.2322 0.6816 49 1 8.6608 1.4196 -0.9930 50 1 4.2915 -2.7492 0.8740 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135262361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:18 Heat of formation + Delta-G solvation = -64.622366 kcal Electronic energy + Delta-G solvation = -31151.473369 eV Core-core repulsion = 27178.050494 eV Total energy + Delta-G solvation = -3973.422876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.91670 -40.63358 -38.46546 -38.26729 -36.14044 -35.57763 -34.21689 -32.98243 -32.25447 -30.86416 -29.93775 -28.67341 -27.67924 -26.82529 -25.43777 -23.89924 -22.78437 -21.87453 -21.74766 -21.00521 -19.39913 -19.30240 -18.25531 -17.98737 -17.37410 -16.79557 -16.61391 -16.19161 -15.95990 -15.69348 -15.41219 -15.20103 -14.76508 -14.55447 -14.53709 -14.28042 -14.15153 -13.88244 -13.84407 -13.54849 -13.37555 -13.19973 -13.12735 -12.88731 -12.84028 -12.80900 -12.72916 -12.55226 -12.46442 -12.41310 -12.17820 -11.87291 -11.78448 -11.61886 -11.09186 -10.91179 -10.84871 -10.46177 -10.36376 -9.90298 -9.61094 -8.89238 -8.17593 -5.11269 -0.02227 0.17983 1.59884 1.64126 1.74406 1.81155 2.29611 2.50087 2.73736 2.80720 3.50036 3.54395 3.66161 3.69576 3.86296 3.86594 3.92473 4.05350 4.11935 4.27510 4.30863 4.38738 4.48335 4.53083 4.56898 4.61665 4.64308 4.68462 4.76025 4.79386 4.81268 4.84599 4.92822 5.00139 5.03154 5.04091 5.08562 5.10261 5.22090 5.30502 5.33849 5.36726 5.53876 5.63190 5.70699 5.76008 6.49382 6.62465 6.69420 6.91383 7.25460 7.35286 8.13893 8.27759 9.31706 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010623 B = 0.004994 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.064597 B = 5605.452007 C = 7496.745317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.136 3.864 3 C -0.182 4.182 4 C -0.022 4.022 5 C -0.114 4.114 6 C -0.142 4.142 7 C -0.096 4.096 8 C 0.533 3.467 9 O -0.586 6.586 10 N -0.693 5.693 11 C 0.148 3.852 12 H 0.054 0.946 13 C -0.151 4.151 14 C -0.121 4.121 15 C 0.169 3.831 16 H 0.026 0.974 17 C -0.154 4.154 18 N -0.731 5.731 19 C -0.315 4.315 20 H 0.045 0.955 21 C -0.074 4.074 22 N -0.959 5.959 23 Si 1.087 2.913 24 H -0.293 1.293 25 H -0.274 1.274 26 H -0.296 1.296 27 C 0.311 3.689 28 O -0.486 6.486 29 N -0.528 5.528 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.167 0.833 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.084 0.916 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.046 0.954 46 H 0.027 0.973 47 H 0.069 0.931 48 H 0.361 0.639 49 H 0.247 0.753 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -5.808 6.339 10.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.001 4.001 3 C -0.202 4.202 4 C -0.030 4.030 5 C -0.170 4.170 6 C -0.145 4.145 7 C -0.136 4.136 8 C 0.320 3.680 9 O -0.468 6.468 10 N -0.344 5.344 11 C 0.043 3.957 12 H 0.072 0.928 13 C -0.209 4.209 14 C -0.159 4.159 15 C 0.061 3.939 16 H 0.045 0.955 17 C -0.214 4.214 18 N -0.376 5.376 19 C -0.447 4.447 20 H 0.063 0.937 21 C -0.268 4.268 22 N -0.607 5.607 23 Si 0.916 3.084 24 H -0.219 1.219 25 H -0.200 1.200 26 H -0.223 1.223 27 C 0.133 3.867 28 O -0.294 6.294 29 N -0.249 5.249 30 H 0.111 0.889 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.185 0.815 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.236 0.764 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.087 0.913 48 H 0.195 0.805 49 H 0.058 0.942 50 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.885 -5.586 5.248 10.996 hybrid contribution 1.950 -0.031 1.072 2.226 sum -5.935 -5.617 6.320 10.330 Atomic orbital electron populations 1.20813 0.85526 1.04634 1.04326 1.21640 0.98538 0.86658 0.93261 1.22128 0.93074 1.00750 1.04233 1.20361 0.94800 0.94826 0.92972 1.20828 0.99676 0.93608 1.02914 1.20291 0.95817 0.93302 1.05123 1.20486 0.91716 1.06190 0.95216 1.20326 0.82665 0.74487 0.90488 1.90600 1.56323 1.52702 1.47174 1.45992 1.06284 1.73077 1.09060 1.20910 0.95229 0.97111 0.82407 0.92764 1.22097 1.01577 0.94970 1.02260 1.22137 0.94841 0.95105 1.03838 1.20386 0.93643 0.94529 0.85380 0.95548 1.22266 0.98307 0.99937 1.00844 1.42514 1.73557 1.14861 1.06660 1.20065 1.34755 0.93647 0.96195 0.93677 1.26176 1.02395 1.05779 0.92458 1.71024 1.48357 1.04952 1.36413 0.83155 0.76461 0.73036 0.75726 1.21855 1.20040 1.22313 1.18911 0.86994 0.85012 0.95807 1.84643 1.76663 1.33145 1.34976 1.67015 1.09242 1.31875 1.16771 0.88893 0.90526 0.88107 0.81501 0.90434 0.89468 0.92628 0.87400 0.87441 0.76381 0.89762 0.94017 0.91292 0.90604 0.87474 0.93458 0.95398 0.91255 0.80494 0.94219 0.73153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.17 71.24 0.72 -1.06 16 2 C 0.14 3.92 6.78 42.51 0.29 4.21 16 3 C -0.18 -5.29 9.44 22.36 0.21 -5.08 16 4 C -0.02 -0.78 5.91 -19.69 -0.12 -0.90 16 5 C -0.11 -4.15 9.28 71.24 0.66 -3.49 16 6 C -0.14 -5.28 4.40 -19.67 -0.09 -5.37 16 7 C -0.10 -3.61 4.96 29.11 0.14 -3.47 16 8 C 0.53 20.42 7.47 87.66 0.66 21.08 16 9 O -0.59 -25.32 15.70 -3.03 -0.05 -25.37 16 10 N -0.69 -23.53 3.80 -442.53 -1.68 -25.21 16 11 C 0.15 4.41 2.58 44.99 0.12 4.53 16 12 H 0.05 1.94 7.58 -2.39 -0.02 1.93 16 13 C -0.15 -3.57 9.48 71.98 0.68 -2.88 16 14 C -0.12 -3.21 4.43 30.60 0.14 -3.07 16 15 C 0.17 5.95 2.89 44.99 0.13 6.08 16 16 H 0.03 1.05 8.08 -2.38 -0.02 1.03 16 17 C -0.15 -4.92 9.49 71.98 0.68 -4.23 16 18 N -0.73 -31.41 3.84 -322.94 -1.24 -32.65 16 19 C -0.31 -15.88 9.93 84.03 0.83 -15.05 16 20 H 0.05 2.39 7.83 -2.91 -0.02 2.36 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.96 -51.24 13.44 21.65 0.29 -50.95 16 23 Si 1.09 48.61 29.92 68.60 2.05 50.66 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.30 -12.99 7.11 99.48 0.71 -12.29 16 27 C 0.31 11.15 7.72 84.78 0.65 11.80 16 28 O -0.49 -15.49 12.62 -89.92 -1.13 -16.62 16 29 N -0.53 -18.07 10.30 -296.97 -3.06 -21.12 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 33 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 35 H 0.09 2.73 8.10 -2.39 -0.02 2.71 16 36 H 0.05 2.41 6.55 -2.39 -0.02 2.39 16 37 H 0.11 4.65 6.55 -2.39 -0.02 4.64 16 38 H 0.11 3.74 7.54 -2.39 -0.02 3.72 16 39 H 0.40 13.60 6.51 -92.71 -0.60 12.99 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.43 8.14 -2.38 -0.02 1.42 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 45 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.36 15.51 4.54 -92.71 -0.42 15.09 16 49 H 0.25 12.86 6.77 -92.71 -0.63 12.24 16 50 H 0.41 10.14 9.06 -74.06 -0.67 9.47 16 Total: -1.00 -66.47 406.18 0.78 -65.69 By element: Atomic # 1 Polarization: 56.41 SS G_CDS: -0.59 Total: 55.83 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 6.18 Total: -0.26 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -5.69 Total: -129.93 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.18 Total: -41.99 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 2.05 Total: 50.66 kcal Total: -66.47 0.78 -65.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135262361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.069 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds