Wall clock time and date at job start Tue Mar 31 2020 19:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 115.55989 * 2 1 4 4 C 1.53072 * 117.49775 * 214.29181 * 2 1 3 5 5 C 1.53003 * 117.50225 * 145.68659 * 2 1 3 6 6 H 1.08996 * 117.49719 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.49969 * 214.98011 * 5 2 1 8 8 O 1.21282 * 119.99939 * 0.09071 * 7 5 2 9 9 N 1.34776 * 120.00028 * 180.08524 * 7 5 2 10 10 C 1.47890 * 134.34438 * 180.02562 * 9 7 5 11 11 C 1.52384 * 85.59336 * 156.48443 * 10 9 7 12 12 C 1.47894 * 134.34209 * 359.97344 * 9 7 5 13 13 C 1.53646 * 116.37388 * 141.33752 * 11 10 9 14 14 C 1.54597 * 102.81150 * 95.34668 * 13 11 10 15 15 N 1.47556 * 107.32619 * 20.84387 * 14 13 11 16 16 C 1.46896 * 111.00423 * 123.22025 * 15 14 13 17 17 C 1.50709 * 109.47089 * 69.86787 * 16 15 14 18 18 O 1.21286 * 119.99851 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99975 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00117 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99927 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00212 * 180.02562 * 20 19 17 23 23 N 1.31403 * 120.00233 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99734 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46994 * 90.00672 * 24 22 20 26 26 H 1.48499 * 109.47189 * 209.99967 * 24 22 20 27 27 H 1.48493 * 109.47255 * 330.00328 * 24 22 20 28 28 C 1.48137 * 108.69239 * 0.87051 * 15 14 13 29 29 H 1.09004 * 109.47148 * 274.30887 * 1 2 3 30 30 H 1.08999 * 109.47485 * 34.31208 * 1 2 3 31 31 H 1.09003 * 109.47038 * 154.31571 * 1 2 3 32 32 H 1.09001 * 109.47424 * 205.68882 * 3 2 1 33 33 H 1.09001 * 109.47321 * 325.68770 * 3 2 1 34 34 H 1.09002 * 109.47570 * 85.68869 * 3 2 1 35 35 H 1.09003 * 117.51754 * 145.03693 * 4 2 1 36 36 H 1.09000 * 117.49539 * 359.97438 * 4 2 1 37 37 H 1.08996 * 113.85503 * 42.31870 * 10 9 7 38 38 H 1.09001 * 113.96242 * 270.66689 * 10 9 7 39 39 H 1.08997 * 113.85040 * 89.34795 * 12 9 7 40 40 H 1.08992 * 113.85121 * 317.67894 * 12 9 7 41 41 H 1.09004 * 110.74630 * 337.01635 * 13 11 10 42 42 H 1.09002 * 110.89974 * 213.74612 * 13 11 10 43 43 H 1.09006 * 109.87188 * 261.41096 * 14 13 11 44 44 H 1.08998 * 109.99540 * 140.34158 * 14 13 11 45 45 H 1.08992 * 109.47714 * 189.87585 * 16 15 14 46 46 H 1.09007 * 109.46902 * 309.87534 * 16 15 14 47 47 H 0.97006 * 119.99686 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00337 * 179.97438 * 23 22 20 49 49 H 1.08993 * 110.41267 * 96.33950 * 28 15 14 50 50 H 1.09000 * 110.41187 * 218.77931 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2367 -1.1218 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6113 -1.8581 1.2687 7 6 3.5293 -0.7810 1.4608 8 8 3.9709 0.3471 1.4025 9 7 4.1947 -1.7305 2.1479 10 6 5.4510 -1.7529 2.9279 11 6 4.8482 -2.9565 3.6422 12 6 3.9585 -3.1643 2.4228 13 6 5.8144 -4.1007 3.9856 14 6 6.2132 -3.7861 5.4457 15 7 5.1699 -2.9060 6.0063 16 6 4.5823 -3.4918 7.2184 17 6 5.5965 -3.4629 8.3328 18 8 6.7000 -2.9995 8.1366 19 7 5.2773 -3.9521 9.5474 20 6 6.1997 -3.9254 10.5613 21 1 7.1823 -3.5127 10.3866 22 6 5.8707 -4.4302 11.8134 23 7 6.7550 -4.4051 12.7850 24 14 4.1713 -5.1447 12.1153 25 1 4.1833 -6.5974 11.8075 26 1 3.7952 -4.9433 13.5376 27 1 3.1846 -4.4615 11.2408 28 6 4.1348 -2.6779 4.9714 29 1 -0.3634 0.0772 1.0248 30 1 -0.3634 0.8488 -0.5793 31 1 -0.3633 -0.9262 -0.4454 32 1 3.1823 1.3085 -0.4455 33 1 1.5811 2.0743 -0.5793 34 1 2.2772 1.7415 1.0247 35 1 3.1720 -0.8765 -1.2683 36 1 1.6114 -1.8596 -1.2676 37 1 5.5872 -0.8824 3.5694 38 1 6.3354 -1.9890 2.3360 39 1 4.3850 -3.8326 1.6747 40 1 2.9233 -3.4014 2.6679 41 1 6.6875 -4.0778 3.3334 42 1 5.3121 -5.0661 3.9221 43 1 7.1770 -3.2772 5.4651 44 1 6.2696 -4.7085 6.0237 45 1 3.7042 -2.9164 7.5113 46 1 4.2910 -4.5231 7.0190 47 1 4.3948 -4.3231 9.7042 48 1 6.5252 -4.7571 13.6592 49 1 3.3024 -3.3682 5.1078 50 1 3.7840 -1.6465 5.0054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147340438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:59 Heat of formation + Delta-G solvation = 7.227856 kcal Electronic energy + Delta-G solvation = -28966.271930 eV Core-core repulsion = 24995.964714 eV Total energy + Delta-G solvation = -3970.307216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.24618 -39.83633 -38.50679 -37.23007 -36.29483 -33.91672 -31.89779 -31.54443 -30.10071 -29.02550 -27.79006 -27.67169 -26.85386 -25.57250 -24.01724 -23.37130 -21.20728 -20.19130 -19.44029 -19.13537 -18.72702 -18.18087 -17.37503 -16.25632 -16.11814 -15.79671 -15.57058 -15.09937 -14.83471 -14.79099 -14.27300 -14.13801 -13.98707 -13.67577 -13.56655 -13.47911 -13.11926 -12.90212 -12.83163 -12.65460 -12.38792 -12.29777 -12.26584 -12.18655 -11.90675 -11.73154 -11.55962 -11.43407 -11.23182 -11.06410 -10.96291 -10.61968 -10.59623 -10.56415 -10.19119 -9.96779 -9.62476 -9.54898 -8.92251 -8.57177 -8.16742 -7.99549 -6.29872 -3.81140 2.28091 2.47690 3.02624 3.06125 3.14886 3.39654 3.74070 3.77072 3.96711 4.10614 4.20561 4.24711 4.28606 4.40078 4.60704 4.67864 4.74153 4.76214 4.86146 5.00477 5.08534 5.16887 5.20681 5.24857 5.28359 5.32343 5.36635 5.44199 5.48935 5.52309 5.58244 5.59393 5.64571 5.68110 5.69944 5.71111 5.75478 5.77146 5.88307 5.89672 5.92017 6.05282 6.24736 6.37696 7.11532 7.14544 7.46363 7.59820 7.98496 8.15806 8.61856 8.96920 9.43938 9.85525 10.83373 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.002072 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.067561 B =13512.886235 C =13984.941212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.147 4.147 5 C -0.183 4.183 6 H 0.119 0.881 7 C 0.564 3.436 8 O -0.534 6.534 9 N -0.641 5.641 10 C 0.130 3.870 11 C -0.104 4.104 12 C 0.118 3.882 13 C -0.130 4.130 14 C 0.057 3.943 15 N -0.505 5.505 16 C 0.038 3.962 17 C 0.453 3.547 18 O -0.557 6.557 19 N -0.594 5.594 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.069 3.931 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.369 0.631 48 H 0.273 0.727 49 H 0.052 0.948 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 0.389 -27.173 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.184 4.184 5 C -0.204 4.204 6 H 0.137 0.863 7 C 0.354 3.646 8 O -0.411 6.411 9 N -0.377 5.377 10 C 0.008 3.992 11 C -0.105 4.105 12 C -0.005 4.005 13 C -0.169 4.169 14 C -0.071 4.071 15 N -0.229 5.229 16 C -0.094 4.094 17 C 0.238 3.762 18 O -0.438 6.438 19 N -0.234 5.234 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.163 4.163 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.059 4.059 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.202 0.798 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.553 1.912 -27.051 29.883 hybrid contribution -1.727 -1.676 0.401 2.439 sum -14.280 0.236 -26.650 30.236 Atomic orbital electron populations 1.21402 0.91437 1.02218 1.02315 1.21621 0.94739 0.91897 1.01203 1.21359 0.99536 0.92395 1.02748 1.23221 1.02951 1.01500 0.90777 1.22285 0.97593 1.04983 0.95569 0.86277 1.19340 0.84426 0.83794 0.77084 1.90720 1.69148 1.20355 1.60906 1.50156 1.25007 1.10273 1.52264 1.22947 0.87149 0.98024 0.91076 1.22433 0.96912 0.96536 0.94630 1.23015 1.00564 0.82147 0.94768 1.22640 0.98863 0.97086 0.98267 1.22797 0.96713 0.95856 0.91728 1.63307 1.10237 1.45974 1.03338 1.22116 0.97579 0.98164 0.91498 1.19643 0.89201 0.83971 0.83352 1.90563 1.22962 1.48252 1.82006 1.42215 1.14497 1.56180 1.10481 1.19418 0.97046 1.38412 0.88283 0.86302 1.25035 0.97908 0.97861 0.95452 1.69617 1.34174 1.45686 1.02783 0.86675 0.84042 0.79901 0.78780 1.19719 1.20207 1.19515 1.22621 0.93435 1.01802 0.87997 0.91893 0.91554 0.92311 0.91773 0.93223 0.91296 0.88364 0.87891 0.89090 0.89534 0.89224 0.89887 0.90224 0.90830 0.89638 0.92424 0.89370 0.93179 0.79805 0.91657 0.93026 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.85 37.16 0.37 -0.34 16 2 C -0.09 -0.77 2.70 -154.47 -0.42 -1.18 16 3 C -0.10 -1.00 8.09 37.16 0.30 -0.70 16 4 C -0.15 -1.05 9.53 -26.69 -0.25 -1.30 16 5 C -0.18 -1.56 5.65 -91.77 -0.52 -2.08 16 6 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 7 C 0.56 6.55 7.82 -10.99 -0.09 6.47 16 8 O -0.53 -8.03 13.83 5.56 0.08 -7.95 16 9 N -0.64 -6.47 3.62 -186.84 -0.68 -7.14 16 10 C 0.13 1.35 8.14 -3.59 -0.03 1.32 16 11 C -0.10 -0.95 0.99 -154.84 -0.15 -1.11 16 12 C 0.12 0.84 7.99 -3.60 -0.03 0.81 16 13 C -0.13 -1.20 6.35 -25.56 -0.16 -1.36 16 14 C 0.06 0.79 5.67 -2.62 -0.01 0.78 16 15 N -0.50 -7.68 4.86 -233.13 -1.13 -8.81 16 16 C 0.04 0.62 5.03 -4.97 -0.02 0.60 16 17 C 0.45 10.17 7.43 -10.98 -0.08 10.09 16 18 O -0.56 -14.79 15.12 5.55 0.08 -14.71 16 19 N -0.59 -14.05 5.09 -10.96 -0.06 -14.10 16 20 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 23 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 24 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 28 C 0.07 0.78 6.09 -2.93 -0.02 0.77 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 31 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.06 0.71 7.02 -51.93 -0.36 0.34 16 33 H 0.05 0.39 7.92 -51.93 -0.41 -0.02 16 34 H 0.07 0.80 7.26 -51.93 -0.38 0.42 16 35 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.10 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 38 H 0.09 0.79 8.04 -51.93 -0.42 0.38 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.08 0.64 7.99 -51.93 -0.41 0.23 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 45 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 46 H 0.05 0.70 7.96 -51.93 -0.41 0.29 16 47 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 48 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 50 H 0.08 1.01 8.07 -51.93 -0.42 0.60 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -34.61 399.70 -9.42 -44.03 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.43 Total: 8.07 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.37 Total: 5.05 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -1.09 Total: -55.08 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.16 Total: -22.66 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.61 -9.42 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147340438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.254 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds