Wall clock time and date at job start Tue Mar 31 2020 19:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 115.55989 * 2 1 4 4 C 1.53072 * 117.49775 * 214.29181 * 2 1 3 5 5 C 1.53003 * 117.50225 * 145.68659 * 2 1 3 6 6 H 1.08996 * 117.49719 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.49969 * 214.98011 * 5 2 1 8 8 O 1.21282 * 119.99939 * 0.09071 * 7 5 2 9 9 N 1.34776 * 120.00028 * 180.08524 * 7 5 2 10 10 C 1.47890 * 134.34438 * 180.02562 * 9 7 5 11 11 C 1.52384 * 85.59336 * 156.48443 * 10 9 7 12 12 C 1.47894 * 134.34209 * 359.97344 * 9 7 5 13 13 C 1.53646 * 116.37388 * 141.33752 * 11 10 9 14 14 C 1.54597 * 102.81150 * 95.34668 * 13 11 10 15 15 N 1.47556 * 107.32619 * 20.84387 * 14 13 11 16 16 C 1.46896 * 111.00423 * 123.22025 * 15 14 13 17 17 C 1.50709 * 109.47089 * 69.86787 * 16 15 14 18 18 O 1.21286 * 119.99851 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99975 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00117 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99927 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00212 * 180.02562 * 20 19 17 23 23 N 1.31403 * 120.00233 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99734 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46994 * 90.00672 * 24 22 20 26 26 H 1.48499 * 109.47189 * 209.99967 * 24 22 20 27 27 H 1.48493 * 109.47255 * 330.00328 * 24 22 20 28 28 C 1.48137 * 108.69239 * 0.87051 * 15 14 13 29 29 H 1.09004 * 109.47148 * 274.30887 * 1 2 3 30 30 H 1.08999 * 109.47485 * 34.31208 * 1 2 3 31 31 H 1.09003 * 109.47038 * 154.31571 * 1 2 3 32 32 H 1.09001 * 109.47424 * 205.68882 * 3 2 1 33 33 H 1.09001 * 109.47321 * 325.68770 * 3 2 1 34 34 H 1.09002 * 109.47570 * 85.68869 * 3 2 1 35 35 H 1.09003 * 117.51754 * 145.03693 * 4 2 1 36 36 H 1.09000 * 117.49539 * 359.97438 * 4 2 1 37 37 H 1.08996 * 113.85503 * 42.31870 * 10 9 7 38 38 H 1.09001 * 113.96242 * 270.66689 * 10 9 7 39 39 H 1.08997 * 113.85040 * 89.34795 * 12 9 7 40 40 H 1.08992 * 113.85121 * 317.67894 * 12 9 7 41 41 H 1.09004 * 110.74630 * 337.01635 * 13 11 10 42 42 H 1.09002 * 110.89974 * 213.74612 * 13 11 10 43 43 H 1.09006 * 109.87188 * 261.41096 * 14 13 11 44 44 H 1.08998 * 109.99540 * 140.34158 * 14 13 11 45 45 H 1.08992 * 109.47714 * 189.87585 * 16 15 14 46 46 H 1.09007 * 109.46902 * 309.87534 * 16 15 14 47 47 H 0.97006 * 119.99686 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00337 * 179.97438 * 23 22 20 49 49 H 1.08993 * 110.41267 * 96.33950 * 28 15 14 50 50 H 1.09000 * 110.41187 * 218.77931 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2367 -1.1218 -0.7650 5 6 2.2365 -1.1209 0.7650 6 1 1.6113 -1.8581 1.2687 7 6 3.5293 -0.7810 1.4608 8 8 3.9709 0.3471 1.4025 9 7 4.1947 -1.7305 2.1479 10 6 5.4510 -1.7529 2.9279 11 6 4.8482 -2.9565 3.6422 12 6 3.9585 -3.1643 2.4228 13 6 5.8144 -4.1007 3.9856 14 6 6.2132 -3.7861 5.4457 15 7 5.1699 -2.9060 6.0063 16 6 4.5823 -3.4918 7.2184 17 6 5.5965 -3.4629 8.3328 18 8 6.7000 -2.9995 8.1366 19 7 5.2773 -3.9521 9.5474 20 6 6.1997 -3.9254 10.5613 21 1 7.1823 -3.5127 10.3866 22 6 5.8707 -4.4302 11.8134 23 7 6.7550 -4.4051 12.7850 24 14 4.1713 -5.1447 12.1153 25 1 4.1833 -6.5974 11.8075 26 1 3.7952 -4.9433 13.5376 27 1 3.1846 -4.4615 11.2408 28 6 4.1348 -2.6779 4.9714 29 1 -0.3634 0.0772 1.0248 30 1 -0.3634 0.8488 -0.5793 31 1 -0.3633 -0.9262 -0.4454 32 1 3.1823 1.3085 -0.4455 33 1 1.5811 2.0743 -0.5793 34 1 2.2772 1.7415 1.0247 35 1 3.1720 -0.8765 -1.2683 36 1 1.6114 -1.8596 -1.2676 37 1 5.5872 -0.8824 3.5694 38 1 6.3354 -1.9890 2.3360 39 1 4.3850 -3.8326 1.6747 40 1 2.9233 -3.4014 2.6679 41 1 6.6875 -4.0778 3.3334 42 1 5.3121 -5.0661 3.9221 43 1 7.1770 -3.2772 5.4651 44 1 6.2696 -4.7085 6.0237 45 1 3.7042 -2.9164 7.5113 46 1 4.2910 -4.5231 7.0190 47 1 4.3948 -4.3231 9.7042 48 1 6.5252 -4.7571 13.6592 49 1 3.3024 -3.3682 5.1078 50 1 3.7840 -1.6465 5.0054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147340438.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:58 Heat of formation + Delta-G solvation = -18.677097 kcal Electronic energy + Delta-G solvation = -28967.395253 eV Core-core repulsion = 24995.964714 eV Total energy + Delta-G solvation = -3971.430539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05406 -40.73585 -40.06588 -38.15843 -37.32855 -35.92084 -33.76078 -32.78620 -30.85338 -29.83171 -28.97869 -28.35345 -27.58486 -26.85006 -25.47835 -24.09439 -22.37642 -21.23015 -20.85372 -20.25192 -19.83553 -19.42038 -18.14458 -17.68219 -17.21399 -16.80531 -16.70107 -16.43152 -16.05983 -15.74196 -15.45061 -15.23659 -14.88139 -14.76006 -14.62867 -14.41001 -14.29773 -14.13549 -13.94162 -13.77765 -13.50289 -13.37156 -13.15972 -12.98714 -12.93216 -12.76691 -12.62841 -12.42205 -12.39173 -12.14693 -12.00758 -11.97417 -11.85566 -11.49108 -11.43260 -11.17557 -10.83836 -10.41276 -10.39781 -10.23284 -9.71112 -9.15856 -8.40332 -6.01175 1.30392 1.36014 1.45145 1.49474 1.75586 1.98411 2.23812 2.62587 2.78155 3.14735 3.15853 3.31934 3.40211 3.59406 3.67627 3.74586 3.84648 4.00769 4.09573 4.18732 4.19012 4.27760 4.37571 4.41640 4.47016 4.55827 4.61780 4.62579 4.67656 4.74374 4.80355 4.81675 4.82967 4.87735 4.92197 5.01721 5.03194 5.05660 5.09811 5.11184 5.16976 5.30027 5.31753 5.50579 5.53911 5.92035 6.04079 6.12090 6.61478 6.71271 6.90074 7.16104 7.41557 7.99821 8.77506 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.002072 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.067561 B =13512.886235 C =13984.941212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.107 4.107 3 C -0.099 4.099 4 C -0.130 4.130 5 C -0.185 4.185 6 H 0.145 0.855 7 C 0.551 3.449 8 O -0.584 6.584 9 N -0.644 5.644 10 C 0.118 3.882 11 C -0.095 4.095 12 C 0.133 3.867 13 C -0.111 4.111 14 C 0.055 3.945 15 N -0.539 5.539 16 C 0.053 3.947 17 C 0.450 3.550 18 O -0.608 6.608 19 N -0.594 5.594 20 C -0.326 4.326 21 H 0.052 0.948 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.255 1.255 26 H -0.277 1.277 27 H -0.231 1.231 28 C 0.072 3.928 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.134 0.866 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.083 0.917 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.621 -2.623 -29.637 35.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.108 4.108 3 C -0.156 4.156 4 C -0.167 4.167 5 C -0.206 4.206 6 H 0.162 0.838 7 C 0.343 3.657 8 O -0.465 6.465 9 N -0.378 5.378 10 C -0.004 4.004 11 C -0.097 4.097 12 C 0.012 3.988 13 C -0.150 4.150 14 C -0.073 4.073 15 N -0.263 5.263 16 C -0.079 4.079 17 C 0.238 3.762 18 O -0.492 6.492 19 N -0.236 5.236 20 C -0.456 4.456 21 H 0.071 0.929 22 C -0.217 4.217 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.179 1.179 26 H -0.202 1.202 27 H -0.154 1.154 28 C -0.054 4.054 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.152 0.848 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.132 0.868 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.467 -1.128 -29.544 34.340 hybrid contribution 0.016 -0.608 1.171 1.319 sum -17.451 -1.735 -28.373 33.355 Atomic orbital electron populations 1.21392 0.89491 1.03480 1.02481 1.21723 0.96083 0.90874 1.02086 1.21249 0.98982 0.94402 1.00978 1.23295 1.02556 1.01123 0.89740 1.22331 0.96166 1.05733 0.96352 0.83757 1.20021 0.85404 0.83351 0.76945 1.90702 1.70557 1.22479 1.62768 1.50287 1.24492 1.11726 1.51305 1.22998 0.88315 0.97609 0.91500 1.22304 0.97147 0.95614 0.94597 1.23220 1.01718 0.80369 0.93529 1.22552 0.99595 0.98212 0.94629 1.22690 0.95287 0.94335 0.94970 1.63117 1.11974 1.46843 1.04404 1.22004 0.95586 1.00968 0.89324 1.20992 0.89728 0.81366 0.84162 1.90546 1.25836 1.49829 1.82998 1.42037 1.14557 1.57014 1.09988 1.18976 0.96031 1.39916 0.90644 0.92936 1.26150 1.03838 0.97517 0.94151 1.69810 1.37478 1.46808 1.03623 0.85340 0.77178 0.79682 0.79148 1.17914 1.20191 1.15418 1.22621 0.93391 1.01696 0.87732 0.92138 0.91178 0.90319 0.93907 0.91780 0.94026 0.89646 0.84833 0.92504 0.88465 0.86426 0.87221 0.88958 0.87900 0.93376 0.93975 0.86809 0.89482 0.77510 0.91204 0.89859 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.85 71.98 0.71 -0.32 16 2 C -0.11 -1.55 2.70 -52.16 -0.14 -1.69 16 3 C -0.10 -1.97 8.09 71.98 0.58 -1.39 16 4 C -0.13 -1.47 9.53 30.62 0.29 -1.18 16 5 C -0.19 -2.67 5.65 -11.54 -0.07 -2.74 16 6 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 7 C 0.55 12.41 7.82 87.66 0.69 13.10 16 8 O -0.58 -18.45 13.83 -3.04 -0.04 -18.49 16 9 N -0.64 -11.79 3.62 -863.42 -3.12 -14.92 16 10 C 0.12 2.41 8.14 85.91 0.70 3.11 16 11 C -0.10 -1.48 0.99 -52.15 -0.05 -1.54 16 12 C 0.13 1.26 7.99 85.90 0.69 1.94 16 13 C -0.11 -1.73 6.35 31.36 0.20 -1.53 16 14 C 0.05 1.53 5.67 86.72 0.49 2.02 16 15 N -0.54 -15.85 4.86 -891.50 -4.33 -20.18 16 16 C 0.05 1.58 5.03 85.56 0.43 2.01 16 17 C 0.45 20.43 7.43 87.66 0.65 21.09 16 18 O -0.61 -34.26 15.12 -3.05 -0.05 -34.30 16 19 N -0.59 -28.06 5.09 -306.98 -1.56 -29.62 16 20 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 21 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 22 C -0.02 -1.02 5.50 84.93 0.47 -0.56 16 23 N -0.94 -56.91 13.96 21.66 0.30 -56.61 16 24 Si 0.97 38.64 27.74 68.60 1.90 40.54 16 25 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 26 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 28 C 0.07 1.44 6.09 86.20 0.53 1.96 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.59 7.92 -2.39 -0.02 0.57 16 31 H 0.08 0.43 7.90 -2.39 -0.02 0.41 16 32 H 0.04 1.01 7.02 -2.39 -0.02 0.99 16 33 H 0.06 1.02 7.92 -2.39 -0.02 1.00 16 34 H 0.04 1.03 7.26 -2.39 -0.02 1.02 16 35 H 0.09 1.20 8.05 -2.39 -0.02 1.19 16 36 H 0.13 0.72 8.05 -2.39 -0.02 0.70 16 37 H 0.06 1.53 8.12 -2.39 -0.02 1.51 16 38 H 0.10 1.74 8.04 -2.39 -0.02 1.72 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.11 0.55 8.12 -2.39 -0.02 0.54 16 41 H 0.09 1.24 7.99 -2.39 -0.02 1.22 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.04 1.27 7.31 -2.39 -0.02 1.25 16 45 H 0.11 2.88 8.07 -2.39 -0.02 2.86 16 46 H 0.09 2.03 7.96 -2.38 -0.02 2.01 16 47 H 0.39 15.06 5.76 -92.70 -0.53 14.53 16 48 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 49 H 0.08 1.17 7.80 -2.39 -0.02 1.15 16 50 H 0.07 1.55 8.07 -2.39 -0.02 1.53 16 Total: -1.00 -86.71 399.70 0.46 -86.25 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.34 Total: 31.48 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 7.01 Total: 15.86 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -8.71 Total: -121.33 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.09 Total: -52.80 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -86.71 0.46 -86.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147340438.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.576 kcal (2) G-P(sol) polarization free energy of solvation -86.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds