Wall clock time and date at job start Tue Mar 31 2020 19:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99958 * 2 1 4 4 C 1.52992 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46998 * 184.39628 * 4 3 2 6 6 N 1.46497 * 109.46002 * 303.08338 * 5 4 3 7 7 C 1.34780 * 120.00384 * 303.01067 * 6 5 4 8 8 O 1.21696 * 119.99534 * 355.02956 * 7 6 5 9 9 C 1.46673 * 120.00219 * 175.02416 * 7 6 5 10 10 N 1.37654 * 126.23231 * 0.34974 * 9 7 6 11 11 H 0.96994 * 125.68019 * 359.97438 * 10 9 7 12 12 C 1.35534 * 108.64150 * 180.12571 * 10 9 7 13 13 C 1.35452 * 108.87262 * 359.57198 * 12 10 9 14 14 C 1.37870 * 126.23385 * 179.97438 * 9 7 6 15 15 C 1.50700 * 126.45708 * 0.02562 * 14 9 7 16 16 C 1.53038 * 109.44763 * 63.05316 * 5 4 3 17 17 C 1.53194 * 109.31263 * 181.38074 * 16 5 4 18 18 N 1.46931 * 108.77114 * 305.36387 * 17 16 5 19 19 C 1.36943 * 120.62546 * 233.58610 * 18 17 16 20 20 H 1.08002 * 119.99852 * 31.79678 * 19 18 17 21 21 C 1.38812 * 119.99919 * 211.79404 * 19 18 17 22 22 N 1.31619 * 119.99520 * 10.84007 * 21 19 18 23 23 Si 1.86795 * 120.00114 * 190.84018 * 21 19 18 24 24 H 1.48500 * 109.46819 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47176 * 120.00068 * 23 21 19 26 26 H 1.48499 * 109.46878 * 240.00084 * 23 21 19 27 27 C 1.46926 * 118.74247 * 53.60804 * 18 17 16 28 28 C 1.53040 * 109.45788 * 183.11247 * 5 4 3 29 29 H 1.09001 * 109.46860 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46930 * 300.00002 * 1 2 3 31 31 H 1.09008 * 109.46966 * 59.99940 * 1 2 3 32 32 H 1.08997 * 109.46745 * 59.99804 * 3 2 1 33 33 H 1.08996 * 109.46779 * 299.99899 * 3 2 1 34 34 H 1.09006 * 109.46965 * 64.39931 * 4 3 2 35 35 H 1.08993 * 109.47555 * 304.39678 * 4 3 2 36 36 H 0.97001 * 120.00106 * 123.00642 * 6 5 4 37 37 H 1.07997 * 125.56339 * 179.83022 * 12 10 9 38 38 H 1.08003 * 126.06567 * 180.22783 * 13 12 10 39 39 H 1.09010 * 109.46961 * 269.99545 * 15 14 9 40 40 H 1.09001 * 109.47424 * 29.99291 * 15 14 9 41 41 H 1.09001 * 109.47750 * 149.99739 * 15 14 9 42 42 H 1.08998 * 109.49510 * 301.32419 * 16 5 4 43 43 H 1.08994 * 109.49885 * 61.42607 * 16 5 4 44 44 H 1.08997 * 109.58485 * 185.57645 * 17 16 5 45 45 H 1.09000 * 109.58944 * 65.14513 * 17 16 5 46 46 H 0.97005 * 119.99754 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58752 * 186.60059 * 27 18 17 48 48 H 1.08999 * 109.58185 * 66.17738 * 27 18 17 49 49 H 1.08995 * 109.50287 * 298.57786 * 28 5 4 50 50 H 1.08998 * 109.50051 * 58.67757 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5782 0.1112 6 7 3.6744 3.4169 -0.9885 7 6 3.8567 3.0251 -2.2652 8 8 4.5009 2.0215 -2.5075 9 6 3.2785 3.8082 -3.3624 10 7 2.5373 4.9613 -3.2364 11 1 2.3066 5.3972 -2.4012 12 6 2.1808 5.3845 -4.4737 13 6 2.6882 4.5284 -5.3926 14 6 3.3845 3.5275 -4.7080 15 6 4.1135 2.3616 -5.3248 16 6 3.7587 3.2096 1.4471 17 6 4.3545 4.6179 1.5397 18 7 5.8050 4.5330 1.3213 19 6 6.6796 5.0680 2.2292 20 1 6.4244 5.0870 3.2784 21 6 7.8942 5.5857 1.8008 22 7 8.1188 5.7596 0.5156 23 14 9.2098 6.0356 3.0482 24 1 8.7133 5.7459 4.4174 25 1 10.4339 5.2366 2.7867 26 1 9.5282 7.4814 2.9321 27 6 6.2992 3.8637 0.1103 28 6 5.6815 2.4639 0.0338 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8629 0.7131 -0.9260 35 1 3.8515 0.5775 0.8488 36 1 3.2233 4.2542 -0.7980 37 1 1.5922 6.2633 -4.6916 38 1 2.5747 4.6051 -6.4639 39 1 5.1475 2.6437 -5.5235 40 1 4.0932 1.5157 -4.6377 41 1 3.6271 2.0823 -6.2595 42 1 2.6723 3.2693 1.5113 43 1 4.1391 2.5991 2.2659 44 1 4.1574 5.0338 2.5277 45 1 3.9069 5.2549 0.7768 46 1 8.9675 6.1218 0.2162 47 1 7.3852 3.7820 0.1553 48 1 6.0101 4.4393 -0.7690 49 1 6.0439 1.8604 0.8660 50 1 5.9637 1.9928 -0.9078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151100139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:29 Heat of formation + Delta-G solvation = -17.253832 kcal Electronic energy + Delta-G solvation = -31114.737815 eV Core-core repulsion = 27143.368993 eV Total energy + Delta-G solvation = -3971.368822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.32100 -39.91969 -37.77148 -37.16073 -34.60140 -32.74674 -31.91015 -31.49599 -30.19689 -29.45464 -28.80410 -26.75645 -26.52063 -24.86195 -23.17231 -22.71009 -21.98949 -20.90440 -20.31524 -19.08552 -18.69695 -18.46460 -16.92774 -16.37754 -16.03672 -15.66286 -15.10628 -15.03848 -14.86884 -14.44925 -13.98733 -13.83008 -13.76445 -13.63994 -13.41918 -13.16641 -13.10754 -12.86047 -12.56776 -12.52525 -12.33192 -12.15133 -11.68591 -11.57433 -11.46782 -11.39003 -11.07229 -11.06239 -10.88410 -10.74972 -10.37304 -10.28143 -10.01982 -9.79443 -9.76626 -9.46258 -9.13786 -8.74183 -8.67338 -8.49476 -8.05580 -6.63664 -5.79936 -3.29399 1.61453 2.78285 3.14046 3.34987 3.41822 3.43072 3.44468 3.64773 3.78388 4.46302 4.93264 4.99860 5.05942 5.15773 5.21423 5.23960 5.31368 5.33014 5.34502 5.41236 5.44421 5.48627 5.53329 5.60562 5.76022 5.80999 5.96501 5.97963 6.01862 6.09264 6.14781 6.21713 6.32844 6.36785 6.48035 6.49830 6.60070 6.65890 6.72457 6.83462 6.89265 7.02398 7.04744 7.18272 7.39720 7.41734 7.72279 7.78182 7.85493 8.45759 8.52495 9.20279 9.81361 10.39334 11.27363 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.004292 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.736270 B = 6522.829809 C = 8287.442316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.067 3.933 4 C -0.129 4.129 5 C 0.197 3.803 6 N -0.714 5.714 7 C 0.591 3.409 8 O -0.521 6.521 9 C -0.051 4.051 10 N -0.540 5.540 11 H 0.415 0.585 12 C 0.019 3.981 13 C -0.214 4.214 14 C -0.080 4.080 15 C -0.088 4.088 16 C -0.141 4.141 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.007 3.993 22 N -0.901 5.901 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.180 3.820 28 C -0.150 4.150 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.390 0.610 37 H 0.168 0.832 38 H 0.140 0.860 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.009 0.991 46 H 0.253 0.747 47 H 0.085 0.915 48 H 0.017 0.983 49 H 0.061 0.939 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.358 -4.248 -7.005 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.009 4.009 4 C -0.168 4.168 5 C 0.111 3.889 6 N -0.365 5.365 7 C 0.378 3.622 8 O -0.398 6.398 9 C -0.164 4.164 10 N -0.136 5.136 11 H 0.252 0.748 12 C -0.117 4.117 13 C -0.238 4.238 14 C -0.088 4.088 15 C -0.146 4.146 16 C -0.181 4.181 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.545 5.545 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.054 3.946 28 C -0.190 4.190 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.224 0.776 37 H 0.185 0.815 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.027 0.973 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.035 0.965 49 H 0.079 0.921 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.633 -5.039 -7.047 17.873 hybrid contribution 0.052 1.460 1.021 1.782 sum -15.581 -3.579 -6.026 17.085 Atomic orbital electron populations 1.22689 0.81681 1.02379 0.99648 1.87887 1.19159 1.28678 1.95357 1.22585 0.94759 0.84023 0.99579 1.21983 0.92295 0.97689 1.04807 1.20203 0.95335 0.87979 0.85334 1.46008 1.60473 1.24600 1.05416 1.16949 0.79621 0.84260 0.81341 1.90741 1.39622 1.25951 1.83471 1.20434 1.07680 0.92875 0.95413 1.41967 1.41801 1.21204 1.08600 0.74780 1.21929 1.04636 1.01591 0.83521 1.20758 1.06231 0.97772 0.99076 1.19922 1.00259 0.98068 0.90557 1.20323 0.98792 0.95613 0.99834 1.22430 0.99141 1.00578 0.95951 1.20852 0.86701 0.91937 0.98495 1.44032 0.98972 1.64462 1.23798 1.19190 0.97941 1.32993 0.88490 0.91869 1.25172 0.99883 0.98339 0.95838 1.69998 1.23971 1.47689 1.12835 0.86220 0.81917 0.77760 0.80832 1.20245 1.21522 1.21696 1.20685 0.99437 0.86869 0.87560 1.22601 0.92402 1.01983 1.02013 0.89901 0.94337 0.94440 0.93396 0.93960 0.89037 0.90550 0.77603 0.81508 0.84264 0.91557 0.90076 0.92449 0.92625 0.90353 0.92537 0.97307 0.93644 0.89671 0.96533 0.92051 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.58 10.70 -35.23 -0.38 -5.95 16 3 C 0.07 0.91 5.50 37.15 0.20 1.12 16 4 C -0.13 -2.00 4.32 -26.73 -0.12 -2.12 16 5 C 0.20 3.21 0.35 -131.78 -0.05 3.16 16 6 N -0.71 -10.84 3.35 -48.86 -0.16 -11.01 16 7 C 0.59 9.79 6.95 -12.85 -0.09 9.70 16 8 O -0.52 -9.91 11.07 5.19 0.06 -9.86 16 9 C -0.05 -0.75 7.05 -81.98 -0.58 -1.33 16 10 N -0.54 -6.10 5.99 -9.39 -0.06 -6.15 16 11 H 0.42 3.68 8.20 -40.82 -0.33 3.34 16 12 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 13 C -0.21 -2.51 10.76 -39.98 -0.43 -2.94 16 14 C -0.08 -1.14 6.21 -104.16 -0.65 -1.78 16 15 C -0.09 -1.20 9.83 36.01 0.35 -0.84 16 16 C -0.14 -2.22 4.72 -26.61 -0.13 -2.35 16 17 C 0.15 2.80 6.24 -3.71 -0.02 2.78 16 18 N -0.59 -14.14 2.98 -172.31 -0.51 -14.65 16 19 C -0.26 -6.86 9.58 -15.06 -0.14 -7.01 16 20 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 21 C 0.01 0.19 5.04 -17.43 -0.09 0.10 16 22 N -0.90 -26.05 11.09 55.49 0.62 -25.43 16 23 Si 0.90 21.54 29.57 -169.99 -5.03 16.52 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 C 0.18 4.30 4.99 -3.71 -0.02 4.28 16 28 C -0.15 -3.00 4.71 -26.61 -0.13 -3.12 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 32 H 0.05 0.60 6.27 -51.93 -0.33 0.27 16 33 H 0.04 0.58 7.46 -51.93 -0.39 0.19 16 34 H 0.09 1.61 6.21 -51.93 -0.32 1.29 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.39 5.24 6.32 -40.82 -0.26 4.98 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 39 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.08 1.23 6.48 -51.93 -0.34 0.89 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.01 0.17 6.88 -51.93 -0.36 -0.19 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.09 2.35 6.14 -51.93 -0.32 2.03 16 48 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 49 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 50 H 0.07 1.55 6.25 -51.93 -0.32 1.23 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -32.35 384.90 -8.51 -40.86 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.88 Total: 8.80 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.96 Total: 1.08 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.12 Total: -57.24 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.32 Total: -15.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.35 -8.51 -40.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151100139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.605 kcal (2) G-P(sol) polarization free energy of solvation -32.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds