Wall clock time and date at job start Tue Mar 31 2020 19:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42906 * 113.99958 * 2 1 4 4 C 1.52992 * 109.46965 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46998 * 184.39628 * 4 3 2 6 6 N 1.46497 * 109.46002 * 303.08338 * 5 4 3 7 7 C 1.34780 * 120.00384 * 303.01067 * 6 5 4 8 8 O 1.21696 * 119.99534 * 355.02956 * 7 6 5 9 9 C 1.46673 * 120.00219 * 175.02416 * 7 6 5 10 10 N 1.37654 * 126.23231 * 0.34974 * 9 7 6 11 11 H 0.96994 * 125.68019 * 359.97438 * 10 9 7 12 12 C 1.35534 * 108.64150 * 180.12571 * 10 9 7 13 13 C 1.35452 * 108.87262 * 359.57198 * 12 10 9 14 14 C 1.37870 * 126.23385 * 179.97438 * 9 7 6 15 15 C 1.50700 * 126.45708 * 0.02562 * 14 9 7 16 16 C 1.53038 * 109.44763 * 63.05316 * 5 4 3 17 17 C 1.53194 * 109.31263 * 181.38074 * 16 5 4 18 18 N 1.46931 * 108.77114 * 305.36387 * 17 16 5 19 19 C 1.36943 * 120.62546 * 233.58610 * 18 17 16 20 20 H 1.08002 * 119.99852 * 31.79678 * 19 18 17 21 21 C 1.38812 * 119.99919 * 211.79404 * 19 18 17 22 22 N 1.31619 * 119.99520 * 10.84007 * 21 19 18 23 23 Si 1.86795 * 120.00114 * 190.84018 * 21 19 18 24 24 H 1.48500 * 109.46819 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47176 * 120.00068 * 23 21 19 26 26 H 1.48499 * 109.46878 * 240.00084 * 23 21 19 27 27 C 1.46926 * 118.74247 * 53.60804 * 18 17 16 28 28 C 1.53040 * 109.45788 * 183.11247 * 5 4 3 29 29 H 1.09001 * 109.46860 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46930 * 300.00002 * 1 2 3 31 31 H 1.09008 * 109.46966 * 59.99940 * 1 2 3 32 32 H 1.08997 * 109.46745 * 59.99804 * 3 2 1 33 33 H 1.08996 * 109.46779 * 299.99899 * 3 2 1 34 34 H 1.09006 * 109.46965 * 64.39931 * 4 3 2 35 35 H 1.08993 * 109.47555 * 304.39678 * 4 3 2 36 36 H 0.97001 * 120.00106 * 123.00642 * 6 5 4 37 37 H 1.07997 * 125.56339 * 179.83022 * 12 10 9 38 38 H 1.08003 * 126.06567 * 180.22783 * 13 12 10 39 39 H 1.09010 * 109.46961 * 269.99545 * 15 14 9 40 40 H 1.09001 * 109.47424 * 29.99291 * 15 14 9 41 41 H 1.09001 * 109.47750 * 149.99739 * 15 14 9 42 42 H 1.08998 * 109.49510 * 301.32419 * 16 5 4 43 43 H 1.08994 * 109.49885 * 61.42607 * 16 5 4 44 44 H 1.08997 * 109.58485 * 185.57645 * 17 16 5 45 45 H 1.09000 * 109.58944 * 65.14513 * 17 16 5 46 46 H 0.97005 * 119.99754 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.58752 * 186.60059 * 27 18 17 48 48 H 1.08999 * 109.58185 * 66.17738 * 27 18 17 49 49 H 1.08995 * 109.50287 * 298.57786 * 28 5 4 50 50 H 1.08998 * 109.50051 * 58.67757 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1574 2.5782 0.1112 6 7 3.6744 3.4169 -0.9885 7 6 3.8567 3.0251 -2.2652 8 8 4.5009 2.0215 -2.5075 9 6 3.2785 3.8082 -3.3624 10 7 2.5373 4.9613 -3.2364 11 1 2.3066 5.3972 -2.4012 12 6 2.1808 5.3845 -4.4737 13 6 2.6882 4.5284 -5.3926 14 6 3.3845 3.5275 -4.7080 15 6 4.1135 2.3616 -5.3248 16 6 3.7587 3.2096 1.4471 17 6 4.3545 4.6179 1.5397 18 7 5.8050 4.5330 1.3213 19 6 6.6796 5.0680 2.2292 20 1 6.4244 5.0870 3.2784 21 6 7.8942 5.5857 1.8008 22 7 8.1188 5.7596 0.5156 23 14 9.2098 6.0356 3.0482 24 1 8.7133 5.7459 4.4174 25 1 10.4339 5.2366 2.7867 26 1 9.5282 7.4814 2.9321 27 6 6.2992 3.8637 0.1103 28 6 5.6815 2.4639 0.0338 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8629 0.7131 -0.9260 35 1 3.8515 0.5775 0.8488 36 1 3.2233 4.2542 -0.7980 37 1 1.5922 6.2633 -4.6916 38 1 2.5747 4.6051 -6.4639 39 1 5.1475 2.6437 -5.5235 40 1 4.0932 1.5157 -4.6377 41 1 3.6271 2.0823 -6.2595 42 1 2.6723 3.2693 1.5113 43 1 4.1391 2.5991 2.2659 44 1 4.1574 5.0338 2.5277 45 1 3.9069 5.2549 0.7768 46 1 8.9675 6.1218 0.2162 47 1 7.3852 3.7820 0.1553 48 1 6.0101 4.4393 -0.7690 49 1 6.0439 1.8604 0.8660 50 1 5.9637 1.9928 -0.9078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151100139.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:28 Heat of formation + Delta-G solvation = -38.411636 kcal Electronic energy + Delta-G solvation = -31115.655286 eV Core-core repulsion = 27143.368993 eV Total energy + Delta-G solvation = -3972.286293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.35723 -41.18457 -38.87157 -38.56834 -36.25525 -33.97689 -33.34582 -32.94053 -31.82449 -30.59688 -30.17829 -27.89085 -27.57093 -26.41993 -24.68826 -24.03159 -23.39809 -22.10363 -21.65066 -20.23121 -20.12604 -19.50245 -18.72964 -17.49891 -17.10561 -16.85592 -16.71177 -16.33593 -16.14481 -15.73080 -15.49458 -15.25790 -15.06485 -14.94754 -14.71252 -14.54418 -14.33182 -13.94003 -13.91103 -13.74789 -13.57710 -13.20864 -13.12490 -13.04354 -12.80317 -12.74533 -12.65097 -12.48639 -12.25750 -12.19717 -12.09136 -11.95063 -11.83244 -11.35897 -11.30928 -10.66756 -10.56901 -10.47094 -10.03088 -9.66162 -9.05878 -8.61565 -7.86592 -5.38239 0.54910 1.44185 1.46789 1.56310 1.88015 2.14791 2.31302 2.45355 2.49754 2.79237 3.30009 3.68584 3.69162 3.91908 4.04629 4.09578 4.15566 4.28761 4.29190 4.34408 4.41843 4.43219 4.51088 4.52063 4.56793 4.65684 4.71766 4.81912 4.85852 4.89721 4.91409 4.98022 5.01694 5.04696 5.10141 5.15394 5.19615 5.27765 5.32211 5.48048 5.49082 5.61968 5.65577 5.75585 5.83912 6.02928 6.23676 6.40653 6.55420 6.69396 7.15382 7.28996 7.85799 8.38459 9.18497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009956 B = 0.004292 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.736270 B = 6522.829809 C = 8287.442316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.076 3.924 4 C -0.121 4.121 5 C 0.205 3.795 6 N -0.706 5.706 7 C 0.586 3.414 8 O -0.557 6.557 9 C -0.087 4.087 10 N -0.532 5.532 11 H 0.427 0.573 12 C 0.045 3.955 13 C -0.230 4.230 14 C -0.098 4.098 15 C -0.086 4.086 16 C -0.128 4.128 17 C 0.142 3.858 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.069 0.931 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.292 1.292 27 C 0.198 3.802 28 C -0.139 4.139 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.400 0.600 37 H 0.213 0.787 38 H 0.161 0.839 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.023 0.977 46 H 0.247 0.753 47 H 0.040 0.960 48 H -0.008 1.008 49 H 0.056 0.944 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.549 -3.238 -6.367 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C 0.000 4.000 4 C -0.159 4.159 5 C 0.119 3.881 6 N -0.358 5.358 7 C 0.375 3.625 8 O -0.436 6.436 9 C -0.200 4.200 10 N -0.128 5.128 11 H 0.266 0.734 12 C -0.092 4.092 13 C -0.254 4.254 14 C -0.107 4.107 15 C -0.143 4.143 16 C -0.167 4.167 17 C 0.017 3.983 18 N -0.329 5.329 19 C -0.391 4.391 20 H 0.087 0.913 21 C -0.244 4.244 22 N -0.582 5.582 23 Si 0.793 3.207 24 H -0.187 1.187 25 H -0.223 1.223 26 H -0.219 1.219 27 C 0.072 3.928 28 C -0.179 4.179 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.236 0.764 37 H 0.230 0.770 38 H 0.178 0.822 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.010 0.990 49 H 0.074 0.926 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.882 -4.018 -6.368 20.328 hybrid contribution 0.975 1.150 0.751 1.684 sum -17.907 -2.868 -5.617 18.986 Atomic orbital electron populations 1.22917 0.79539 1.03799 1.00727 1.87845 1.21525 1.28847 1.95560 1.22442 0.92918 0.84253 1.00405 1.21800 0.94208 0.96473 1.03463 1.19996 0.92531 0.89190 0.86368 1.45861 1.60253 1.24819 1.04849 1.17291 0.79138 0.84026 0.82018 1.90723 1.41247 1.27587 1.84020 1.20201 1.10154 0.94715 0.94905 1.41979 1.40928 1.20117 1.09809 0.73414 1.22679 1.02550 1.01617 0.82339 1.21087 1.06349 0.97440 1.00542 1.20257 1.00618 0.98799 0.91060 1.20270 0.98668 0.94998 1.00366 1.22306 1.01404 0.97979 0.94969 1.21071 0.83748 0.94274 0.99220 1.44221 1.01079 1.64569 1.23070 1.19552 0.98561 1.31654 0.89286 0.91303 1.25900 1.02062 0.99152 0.97302 1.70171 1.24032 1.49299 1.14677 0.85241 0.79083 0.76935 0.79405 1.18700 1.22288 1.21870 1.20263 0.96969 0.88606 0.86962 1.22384 0.95559 0.99035 1.00883 0.88482 0.92684 0.93834 0.91336 0.94094 0.91632 0.90486 0.76395 0.77025 0.82153 0.92489 0.92366 0.90083 0.88446 0.90581 0.91868 0.95964 0.94414 0.94157 0.99008 0.92567 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.15 10.70 -148.98 -1.59 -12.74 16 3 C 0.08 1.92 5.50 71.98 0.40 2.31 16 4 C -0.12 -3.69 4.32 30.59 0.13 -3.56 16 5 C 0.20 6.60 0.35 3.63 0.00 6.61 16 6 N -0.71 -21.17 3.35 -426.72 -1.43 -22.59 16 7 C 0.59 19.88 6.95 86.44 0.60 20.48 16 8 O -0.56 -22.43 11.07 -4.34 -0.05 -22.48 16 9 C -0.09 -2.54 7.05 40.35 0.28 -2.25 16 10 N -0.53 -10.84 5.99 -183.63 -1.10 -11.94 16 11 H 0.43 6.42 8.20 -92.71 -0.76 5.66 16 12 C 0.04 0.75 11.89 83.48 0.99 1.75 16 13 C -0.23 -4.89 10.76 22.01 0.24 -4.65 16 14 C -0.10 -2.78 6.21 -19.57 -0.12 -2.90 16 15 C -0.09 -2.40 9.83 71.24 0.70 -1.70 16 16 C -0.13 -3.69 4.72 30.67 0.14 -3.55 16 17 C 0.14 5.16 6.24 86.36 0.54 5.70 16 18 N -0.61 -29.23 2.98 -699.08 -2.09 -31.31 16 19 C -0.26 -13.98 9.58 84.03 0.80 -13.17 16 20 H 0.07 3.57 7.85 -2.91 -0.02 3.54 16 21 C -0.05 -2.72 5.04 84.86 0.43 -2.29 16 22 N -0.94 -56.13 11.09 21.65 0.24 -55.89 16 23 Si 0.96 44.99 29.57 68.60 2.03 47.01 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 27 C 0.20 9.88 4.99 86.36 0.43 10.31 16 28 C -0.14 -5.76 4.71 30.67 0.14 -5.62 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.07 1.44 6.27 -2.39 -0.01 1.42 16 33 H 0.04 1.05 7.46 -2.39 -0.02 1.03 16 34 H 0.06 2.38 6.21 -2.38 -0.01 2.37 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.40 10.12 6.32 -92.71 -0.59 9.54 16 37 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 1.88 6.48 -2.39 -0.02 1.86 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.10 2.08 6.35 -2.39 -0.02 2.07 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 45 H 0.02 0.77 6.88 -2.39 -0.02 0.75 16 46 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 47 H 0.04 2.36 6.14 -2.39 -0.01 2.34 16 48 H -0.01 -0.44 7.74 -2.39 -0.02 -0.46 16 49 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.06 2.59 6.25 -2.39 -0.01 2.57 16 Total: -1.00 -74.40 384.90 2.59 -71.81 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: -0.38 Total: 28.98 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 6.96 Total: 9.16 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -4.38 Total: -121.74 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.64 Total: -35.22 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.40 2.59 -71.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151100139.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.395 kcal (2) G-P(sol) polarization free energy of solvation -74.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds