Wall clock time and date at job start Tue Mar 31 2020 18:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38680 * 119.28143 * 2 1 4 4 C 1.37997 * 119.63077 * 179.97438 * 3 2 1 5 5 C 1.41001 * 118.28370 * 359.97438 * 4 3 2 6 6 C 1.41026 * 120.70636 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99970 * 154.85684 * 6 5 4 8 8 C 1.39952 * 119.99842 * 334.85507 * 6 5 4 9 9 N 1.30864 * 120.00089 * 344.01287 * 8 6 5 10 10 Si 1.86802 * 119.99588 * 164.01149 * 8 6 5 11 11 H 1.48499 * 109.47297 * 59.99964 * 10 8 6 12 12 H 1.48500 * 109.46786 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46956 * 300.00100 * 10 8 6 14 14 C 1.41705 * 118.58765 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90603 * 179.97438 * 14 5 4 16 16 C 1.46495 * 119.99987 * 179.97438 * 15 14 5 17 17 C 1.53005 * 109.46999 * 179.97438 * 16 15 14 18 18 H 1.09000 * 110.28372 * 305.69815 * 17 16 15 19 19 O 1.43884 * 110.32190 * 67.82042 * 17 16 15 20 20 C 1.43787 * 107.10782 * 117.18976 * 19 17 16 21 21 H 1.08997 * 110.11329 * 265.90930 * 20 19 17 22 22 C 1.52997 * 110.11241 * 144.32210 * 20 19 17 23 23 C 1.53003 * 109.47296 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47563 * 300.00576 * 22 20 19 25 25 O 1.44385 * 106.16852 * 25.08836 * 20 19 17 26 26 C 1.45006 * 103.29608 * 320.83514 * 25 20 19 27 27 H 1.09000 * 110.71165 * 278.20303 * 26 25 20 28 28 C 1.52998 * 110.82550 * 154.85378 * 26 25 20 29 29 N 1.46905 * 109.47044 * 71.56211 * 28 26 25 30 30 N 1.31971 * 119.27662 * 180.23104 * 2 1 3 31 31 H 1.09004 * 109.47076 * 90.00176 * 1 2 3 32 32 H 1.09001 * 109.46806 * 210.00094 * 1 2 3 33 33 H 1.09003 * 109.47050 * 330.00003 * 1 2 3 34 34 H 1.08007 * 120.18090 * 359.95425 * 3 2 1 35 35 H 1.08008 * 120.86141 * 180.02562 * 4 3 2 36 36 H 0.97003 * 120.00074 * 179.97438 * 9 8 6 37 37 H 0.97007 * 120.00205 * 359.97438 * 15 14 5 38 38 H 1.09003 * 109.47700 * 299.99934 * 16 15 14 39 39 H 1.08995 * 109.47216 * 60.00097 * 16 15 14 40 40 H 1.09012 * 109.46778 * 60.00625 * 22 20 19 41 41 H 1.09000 * 109.46647 * 60.00159 * 23 22 20 42 42 H 1.08996 * 109.47284 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.47022 * 300.01030 * 23 22 20 44 44 H 1.09003 * 109.46775 * 179.97438 * 24 22 20 45 45 H 1.08995 * 109.46956 * 299.99636 * 24 22 20 46 46 H 1.08998 * 109.46855 * 59.99776 * 24 22 20 47 47 H 1.08999 * 109.47469 * 191.56687 * 28 26 25 48 48 H 1.09000 * 109.46991 * 311.56618 * 28 26 25 49 49 H 1.00898 * 110.99521 * 56.05182 * 29 28 26 50 50 H 1.00901 * 110.99590 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2409 -0.0196 0.0016 6 6 5.6502 -0.0706 0.0028 7 1 6.1589 -0.9360 0.4009 8 6 6.3896 1.0003 -0.5122 9 7 5.8058 1.8952 -1.2678 10 14 8.2098 1.1524 -0.1207 11 1 8.9253 -0.0499 -0.6185 12 1 8.7584 2.3642 -0.7806 13 1 8.3924 1.2639 1.3489 14 6 3.4737 -1.2110 0.0016 15 7 4.1073 -2.4379 0.0021 16 6 3.3162 -3.6708 0.0026 17 6 4.2549 -4.8791 0.0024 18 1 4.9576 -4.8116 -0.8281 19 8 4.9642 -4.9610 1.2516 20 6 4.5752 -6.1950 1.8788 21 1 3.7482 -6.0212 2.5672 22 6 5.7634 -6.8021 2.6273 23 6 5.3339 -8.1136 3.2880 24 6 6.9009 -7.0768 1.6416 25 8 4.1572 -7.0738 0.8122 26 6 3.4424 -6.1896 -0.0877 27 1 2.4199 -6.0339 0.2564 28 6 3.4571 -6.7388 -1.5156 29 7 2.5812 -7.9154 -1.5967 30 7 2.1524 -1.1511 -0.0046 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6365 2.1399 -0.0007 35 1 4.1136 2.1485 0.0010 36 1 6.3182 2.6376 -1.6244 37 1 5.0763 -2.4834 0.0021 38 1 2.6875 -3.6989 0.8926 39 1 2.6876 -3.6996 -0.8874 40 1 6.1058 -6.1048 3.3921 41 1 4.9918 -8.8107 2.5230 42 1 6.1803 -8.5459 3.8216 43 1 4.5233 -7.9183 3.9901 44 1 7.7475 -7.5090 2.1751 45 1 6.5585 -7.7741 0.8770 46 1 7.2070 -6.1427 1.1707 47 1 3.1005 -5.9722 -2.2035 48 1 4.4742 -7.0238 -1.7848 49 1 1.6463 -7.6919 -1.2900 50 1 2.5742 -8.2971 -2.5307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159242671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:13 Heat of formation + Delta-G solvation = -72.883263 kcal Electronic energy + Delta-G solvation = -29870.307610 eV Core-core repulsion = 25896.526515 eV Total energy + Delta-G solvation = -3973.781095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.68910 -38.56504 -36.04529 -35.59079 -34.42258 -34.08835 -33.90043 -31.21594 -30.49345 -29.20383 -27.72751 -27.19021 -26.08165 -25.32773 -23.87710 -22.54834 -21.55967 -20.67819 -20.46697 -20.20610 -17.33624 -17.21799 -16.87862 -16.43808 -15.86811 -15.56131 -15.21305 -15.14757 -14.81742 -14.40426 -14.05840 -14.00916 -13.81358 -13.37682 -13.34398 -13.07278 -12.89787 -12.54594 -12.48827 -12.35749 -12.18333 -12.01939 -11.95727 -11.64496 -11.50135 -11.40277 -11.35281 -11.26648 -11.08527 -10.98576 -10.83889 -10.80787 -10.50318 -10.24620 -9.78634 -9.50616 -9.24998 -8.94700 -8.87499 -8.06817 -7.88173 -6.79520 -6.48767 -4.20481 2.73240 3.06425 3.08648 3.12452 3.23905 3.42138 3.79964 3.93184 3.93857 4.45173 4.63403 4.67456 4.74091 4.83145 4.87732 4.90924 4.98100 5.13508 5.22714 5.34761 5.37918 5.54874 5.62893 5.65300 5.70403 5.78467 5.83710 5.88175 5.94967 6.00869 6.12991 6.13443 6.23090 6.27984 6.34244 6.43064 6.44859 6.56062 6.80978 6.82040 6.93811 7.03493 7.14158 7.16301 7.22633 7.66081 7.79757 8.02491 8.28813 8.52938 8.66822 8.79909 9.00576 9.78625 10.21464 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.003644 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.845210 B = 7682.530614 C = 9446.029304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.024 3.976 3 C -0.185 4.185 4 C -0.124 4.124 5 C 0.032 3.968 6 C -0.455 4.455 7 H 0.075 0.925 8 C 0.076 3.924 9 N -0.799 5.799 10 Si 0.907 3.093 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.308 3.692 15 N -0.723 5.723 16 C 0.143 3.857 17 C 0.046 3.954 18 H 0.096 0.904 19 O -0.366 6.366 20 C 0.229 3.771 21 H 0.070 0.930 22 C -0.093 4.093 23 C -0.143 4.143 24 C -0.141 4.141 25 O -0.353 6.353 26 C 0.059 3.941 27 H 0.084 0.916 28 C 0.069 3.931 29 N -0.844 5.844 30 N -0.531 5.531 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.280 0.720 37 H 0.406 0.594 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.084 0.916 49 H 0.341 0.659 50 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 -14.853 1.846 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.150 4.150 5 C 0.025 3.975 6 C -0.486 4.486 7 H 0.093 0.907 8 C -0.141 4.141 9 N -0.426 5.426 10 Si 0.731 3.269 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.189 1.189 14 C 0.070 3.930 15 N -0.364 5.364 16 C 0.017 3.983 17 C -0.013 4.013 18 H 0.114 0.886 19 O -0.287 6.287 20 C 0.134 3.866 21 H 0.087 0.913 22 C -0.111 4.111 23 C -0.201 4.201 24 C -0.198 4.198 25 O -0.273 6.273 26 C 0.000 4.000 27 H 0.102 0.898 28 C -0.062 4.062 29 N -0.374 5.374 30 N -0.249 5.249 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.143 0.857 36 H 0.091 0.909 37 H 0.243 0.757 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.103 0.897 49 H 0.153 0.847 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.969 -15.892 2.290 16.177 hybrid contribution 0.939 1.708 -0.617 2.044 sum -1.031 -14.184 1.673 14.320 Atomic orbital electron populations 1.20278 0.91874 1.00626 1.00290 1.19932 0.94220 0.88018 1.08860 1.21218 0.95370 0.96614 1.07580 1.21345 0.92096 0.98202 1.03349 1.17897 0.93873 0.90033 0.95712 1.19131 0.90783 1.02909 1.35789 0.90702 1.25799 1.00749 0.94854 0.92698 1.69801 1.38489 1.11064 1.23211 0.86393 0.82183 0.78455 0.79843 1.19084 1.20439 1.18929 1.18390 0.87908 0.85457 1.01257 1.43525 1.07499 1.00780 1.84567 1.21152 0.92619 0.83234 1.01264 1.23844 0.94513 0.94973 0.87994 0.88573 1.88995 1.67151 1.39345 1.33214 1.24366 0.95163 0.78020 0.89087 0.91294 1.21275 0.94469 0.97656 0.97721 1.21746 1.01183 0.96594 1.00530 1.21695 0.96832 1.02311 0.98987 1.89534 1.72617 1.30929 1.34216 1.23728 0.96690 0.87765 0.91801 0.89832 1.21789 0.99196 0.92017 0.93186 1.58606 1.15092 1.32477 1.31236 1.66317 1.08363 1.29909 1.20333 0.93306 0.92879 0.92930 0.88810 0.85670 0.90942 0.75679 0.92800 0.92206 0.89555 0.91670 0.92272 0.92757 0.92981 0.92073 0.91979 0.93242 0.89725 0.84664 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.01 0.37 -0.96 16 2 C 0.02 0.56 6.79 -82.37 -0.56 0.00 16 3 C -0.19 -4.42 9.69 -39.51 -0.38 -4.80 16 4 C -0.12 -3.23 8.79 -38.62 -0.34 -3.57 16 5 C 0.03 0.84 5.60 -106.47 -0.60 0.24 16 6 C -0.45 -11.68 8.52 -37.88 -0.32 -12.00 16 7 H 0.07 1.83 6.69 -52.49 -0.35 1.48 16 8 C 0.08 1.87 5.20 -17.32 -0.09 1.78 16 9 N -0.80 -20.44 10.93 55.55 0.61 -19.83 16 10 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 11 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 12 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 14 C 0.31 7.57 7.52 -155.03 -1.17 6.40 16 15 N -0.72 -15.11 5.60 -59.97 -0.34 -15.44 16 16 C 0.14 2.43 5.27 -4.04 -0.02 2.41 16 17 C 0.05 0.64 3.35 -25.96 -0.09 0.55 16 18 H 0.10 1.32 7.84 -51.93 -0.41 0.92 16 19 O -0.37 -5.63 10.31 -59.28 -0.61 -6.24 16 20 C 0.23 3.00 3.53 37.16 0.13 3.13 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 22 C -0.09 -1.06 3.06 -90.62 -0.28 -1.33 16 23 C -0.14 -1.38 9.08 37.16 0.34 -1.05 16 24 C -0.14 -1.61 8.88 37.16 0.33 -1.28 16 25 O -0.35 -4.61 9.99 -59.28 -0.59 -5.20 16 26 C 0.06 0.70 3.16 -25.97 -0.08 0.62 16 27 H 0.08 0.96 7.86 -51.93 -0.41 0.56 16 28 C 0.07 0.70 6.42 -3.82 -0.02 0.68 16 29 N -0.84 -7.63 9.62 -10.37 -0.10 -7.73 16 30 N -0.53 -12.79 9.44 -8.11 -0.08 -12.87 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.09 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.13 3.35 6.25 -52.48 -0.33 3.02 16 36 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.41 8.43 6.68 -40.82 -0.27 8.16 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.98 8.14 -51.92 -0.42 0.56 16 41 H 0.06 0.68 7.80 -51.93 -0.41 0.27 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.72 7.63 -51.93 -0.40 0.33 16 46 H 0.06 0.78 7.71 -51.93 -0.40 0.38 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.34 2.72 8.99 -39.29 -0.35 2.37 16 50 H 0.34 2.44 9.08 -39.29 -0.36 2.09 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -29.34 402.33 -11.16 -40.50 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -8.31 Total: 16.40 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.78 Total: -9.18 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.10 Total: -55.87 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.20 Total: -11.44 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.34 -11.16 -40.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159242671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.382 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds