Wall clock time and date at job start Tue Mar 31 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38680 * 119.28143 * 2 1 4 4 C 1.37997 * 119.63077 * 179.97438 * 3 2 1 5 5 C 1.41001 * 118.28370 * 359.97438 * 4 3 2 6 6 C 1.41026 * 120.70636 * 180.02562 * 5 4 3 7 7 H 1.07995 * 119.99970 * 154.85684 * 6 5 4 8 8 C 1.39952 * 119.99842 * 334.85507 * 6 5 4 9 9 N 1.30864 * 120.00089 * 344.01287 * 8 6 5 10 10 Si 1.86802 * 119.99588 * 164.01149 * 8 6 5 11 11 H 1.48499 * 109.47297 * 59.99964 * 10 8 6 12 12 H 1.48500 * 109.46786 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46956 * 300.00100 * 10 8 6 14 14 C 1.41705 * 118.58765 * 0.02562 * 5 4 3 15 15 N 1.38088 * 119.90603 * 179.97438 * 14 5 4 16 16 C 1.46495 * 119.99987 * 179.97438 * 15 14 5 17 17 C 1.53005 * 109.46999 * 179.97438 * 16 15 14 18 18 H 1.09000 * 110.28372 * 305.69815 * 17 16 15 19 19 O 1.43884 * 110.32190 * 67.82042 * 17 16 15 20 20 C 1.43787 * 107.10782 * 117.18976 * 19 17 16 21 21 H 1.08997 * 110.11329 * 265.90930 * 20 19 17 22 22 C 1.52997 * 110.11241 * 144.32210 * 20 19 17 23 23 C 1.53003 * 109.47296 * 180.02562 * 22 20 19 24 24 C 1.53000 * 109.47563 * 300.00576 * 22 20 19 25 25 O 1.44385 * 106.16852 * 25.08836 * 20 19 17 26 26 C 1.45006 * 103.29608 * 320.83514 * 25 20 19 27 27 H 1.09000 * 110.71165 * 278.20303 * 26 25 20 28 28 C 1.52998 * 110.82550 * 154.85378 * 26 25 20 29 29 N 1.46905 * 109.47044 * 71.56211 * 28 26 25 30 30 N 1.31971 * 119.27662 * 180.23104 * 2 1 3 31 31 H 1.09004 * 109.47076 * 90.00176 * 1 2 3 32 32 H 1.09001 * 109.46806 * 210.00094 * 1 2 3 33 33 H 1.09003 * 109.47050 * 330.00003 * 1 2 3 34 34 H 1.08007 * 120.18090 * 359.95425 * 3 2 1 35 35 H 1.08008 * 120.86141 * 180.02562 * 4 3 2 36 36 H 0.97003 * 120.00074 * 179.97438 * 9 8 6 37 37 H 0.97007 * 120.00205 * 359.97438 * 15 14 5 38 38 H 1.09003 * 109.47700 * 299.99934 * 16 15 14 39 39 H 1.08995 * 109.47216 * 60.00097 * 16 15 14 40 40 H 1.09012 * 109.46778 * 60.00625 * 22 20 19 41 41 H 1.09000 * 109.46647 * 60.00159 * 23 22 20 42 42 H 1.08996 * 109.47284 * 180.02562 * 23 22 20 43 43 H 1.09005 * 109.47022 * 300.01030 * 23 22 20 44 44 H 1.09003 * 109.46775 * 179.97438 * 24 22 20 45 45 H 1.08995 * 109.46956 * 299.99636 * 24 22 20 46 46 H 1.08998 * 109.46855 * 59.99776 * 24 22 20 47 47 H 1.08999 * 109.47469 * 191.56687 * 28 26 25 48 48 H 1.09000 * 109.46991 * 311.56618 * 28 26 25 49 49 H 1.00898 * 110.99521 * 56.05182 * 29 28 26 50 50 H 1.00901 * 110.99590 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2096 0.0000 4 6 3.5652 1.2180 0.0005 5 6 4.2409 -0.0196 0.0016 6 6 5.6502 -0.0706 0.0028 7 1 6.1589 -0.9360 0.4009 8 6 6.3896 1.0003 -0.5122 9 7 5.8058 1.8952 -1.2678 10 14 8.2098 1.1524 -0.1207 11 1 8.9253 -0.0499 -0.6185 12 1 8.7584 2.3642 -0.7806 13 1 8.3924 1.2639 1.3489 14 6 3.4737 -1.2110 0.0016 15 7 4.1073 -2.4379 0.0021 16 6 3.3162 -3.6708 0.0026 17 6 4.2549 -4.8791 0.0024 18 1 4.9576 -4.8116 -0.8281 19 8 4.9642 -4.9610 1.2516 20 6 4.5752 -6.1950 1.8788 21 1 3.7482 -6.0212 2.5672 22 6 5.7634 -6.8021 2.6273 23 6 5.3339 -8.1136 3.2880 24 6 6.9009 -7.0768 1.6416 25 8 4.1572 -7.0738 0.8122 26 6 3.4424 -6.1896 -0.0877 27 1 2.4199 -6.0339 0.2564 28 6 3.4571 -6.7388 -1.5156 29 7 2.5812 -7.9154 -1.5967 30 7 2.1524 -1.1511 -0.0046 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6365 2.1399 -0.0007 35 1 4.1136 2.1485 0.0010 36 1 6.3182 2.6376 -1.6244 37 1 5.0763 -2.4834 0.0021 38 1 2.6875 -3.6989 0.8926 39 1 2.6876 -3.6996 -0.8874 40 1 6.1058 -6.1048 3.3921 41 1 4.9918 -8.8107 2.5230 42 1 6.1803 -8.5459 3.8216 43 1 4.5233 -7.9183 3.9901 44 1 7.7475 -7.5090 2.1751 45 1 6.5585 -7.7741 0.8770 46 1 7.2070 -6.1427 1.1707 47 1 3.1005 -5.9722 -2.2035 48 1 4.4742 -7.0238 -1.7848 49 1 1.6463 -7.6919 -1.2900 50 1 2.5742 -8.2971 -2.5307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159242671.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:12 Heat of formation + Delta-G solvation = -91.577320 kcal Electronic energy + Delta-G solvation = -29871.118245 eV Core-core repulsion = 25896.526515 eV Total energy + Delta-G solvation = -3974.591730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.76916 -40.38873 -37.19008 -36.67830 -36.01100 -35.64455 -34.85112 -32.81263 -32.16835 -30.61636 -29.42174 -28.05110 -27.38087 -26.31708 -25.58650 -23.80663 -22.79919 -22.36983 -22.13540 -21.15379 -19.12886 -18.41592 -17.91942 -17.81203 -17.40696 -16.96224 -16.63157 -16.08993 -16.00877 -15.61086 -15.57560 -15.30881 -15.09205 -14.82646 -14.48272 -14.30069 -14.19326 -13.98008 -13.75649 -13.63445 -13.48853 -13.32689 -13.17733 -12.99301 -12.97802 -12.93248 -12.74911 -12.54382 -12.33367 -12.27576 -12.15779 -11.92554 -11.74904 -11.63025 -11.29384 -11.08892 -10.63132 -10.60515 -9.95448 -9.78590 -9.65582 -8.64683 -8.30512 -6.12819 0.91356 1.21746 1.39070 1.48721 1.53195 2.21770 2.35709 2.64205 2.80681 2.82925 3.27206 3.64650 3.67661 3.77349 3.87004 3.88468 4.01288 4.02921 4.13248 4.18092 4.23332 4.31695 4.52329 4.53871 4.64361 4.66482 4.73666 4.77225 4.80779 4.87440 4.95923 4.98797 4.99654 5.00679 5.05217 5.06265 5.17195 5.19317 5.25922 5.39881 5.42795 5.43176 5.79444 5.89930 5.96332 6.14314 6.14732 6.40728 6.56128 6.76336 6.81350 6.90601 7.13912 7.91910 8.38737 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009607 B = 0.003644 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.845210 B = 7682.530614 C = 9446.029304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.021 3.979 3 C -0.200 4.200 4 C -0.145 4.145 5 C -0.003 4.003 6 C -0.481 4.481 7 H 0.076 0.924 8 C 0.036 3.964 9 N -0.832 5.832 10 Si 0.977 3.023 11 H -0.259 1.259 12 H -0.271 1.271 13 H -0.265 1.265 14 C 0.300 3.700 15 N -0.721 5.721 16 C 0.149 3.851 17 C 0.053 3.947 18 H 0.099 0.901 19 O -0.387 6.387 20 C 0.224 3.776 21 H 0.071 0.929 22 C -0.094 4.094 23 C -0.136 4.136 24 C -0.136 4.136 25 O -0.356 6.356 26 C 0.065 3.935 27 H 0.090 0.910 28 C 0.074 3.926 29 N -0.850 5.850 30 N -0.540 5.540 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.285 0.715 37 H 0.404 0.596 38 H 0.043 0.957 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.058 0.942 48 H 0.080 0.920 49 H 0.348 0.652 50 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.364 -16.233 2.043 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C -0.222 4.222 4 C -0.172 4.172 5 C -0.010 4.010 6 C -0.512 4.512 7 H 0.094 0.906 8 C -0.177 4.177 9 N -0.459 5.459 10 Si 0.798 3.202 11 H -0.183 1.183 12 H -0.195 1.195 13 H -0.189 1.189 14 C 0.061 3.939 15 N -0.359 5.359 16 C 0.024 3.976 17 C -0.006 4.006 18 H 0.117 0.883 19 O -0.309 6.309 20 C 0.129 3.871 21 H 0.088 0.912 22 C -0.112 4.112 23 C -0.194 4.194 24 C -0.193 4.193 25 O -0.277 6.277 26 C 0.006 3.994 27 H 0.107 0.893 28 C -0.057 4.057 29 N -0.382 5.382 30 N -0.259 5.259 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.241 0.759 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.099 0.901 49 H 0.161 0.839 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.297 -17.311 2.479 17.638 hybrid contribution 0.910 2.106 -0.669 2.389 sum -1.387 -15.206 1.810 15.376 Atomic orbital electron populations 1.20338 0.88134 1.02267 1.01789 1.20789 0.96758 0.87438 1.06313 1.21485 0.94736 0.98178 1.07840 1.21375 0.93301 0.97735 1.04766 1.18238 0.94728 0.90920 0.97147 1.19326 0.91022 1.03874 1.36961 0.90591 1.26594 1.05040 0.94121 0.91987 1.69866 1.40304 1.11699 1.24001 0.85327 0.76671 0.78786 0.79396 1.18339 1.19532 1.18923 1.18673 0.88332 0.86367 1.00518 1.43645 1.07686 1.01026 1.83577 1.21221 0.92805 0.82740 1.00813 1.23743 0.94262 0.94758 0.87843 0.88303 1.88982 1.67450 1.40666 1.33759 1.24548 0.96020 0.77470 0.89069 0.91163 1.21331 0.93817 0.98498 0.97580 1.21696 1.02013 0.95297 1.00348 1.21639 0.97423 1.01302 0.98928 1.89533 1.72782 1.31018 1.34325 1.23751 0.96333 0.86491 0.92829 0.89252 1.21713 0.99414 0.92675 0.91918 1.58569 1.15408 1.31905 1.32297 1.66497 1.07979 1.30375 1.21051 0.91719 0.91976 0.90585 0.86519 0.87272 0.90421 0.75913 0.93827 0.91784 0.89562 0.92408 0.90709 0.92133 0.91312 0.92636 0.93718 0.92394 0.90118 0.83914 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.24 0.72 -1.57 16 2 C 0.02 0.97 6.79 42.64 0.29 1.26 16 3 C -0.20 -9.55 9.69 22.32 0.22 -9.34 16 4 C -0.15 -7.81 8.79 22.89 0.20 -7.61 16 5 C 0.00 -0.18 5.60 -21.06 -0.12 -0.30 16 6 C -0.48 -25.42 8.52 23.37 0.20 -25.22 16 7 H 0.08 3.84 6.69 -2.91 -0.02 3.82 16 8 C 0.04 1.82 5.20 85.25 0.44 2.27 16 9 N -0.83 -43.61 10.93 21.83 0.24 -43.37 16 10 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 11 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 12 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 13 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 14 C 0.30 14.99 7.52 134.05 1.01 16.00 16 15 N -0.72 -30.57 5.60 -343.66 -1.92 -32.50 16 16 C 0.15 5.04 5.27 86.38 0.46 5.50 16 17 C 0.05 1.46 3.35 31.09 0.10 1.56 16 18 H 0.10 2.69 7.84 -2.39 -0.02 2.68 16 19 O -0.39 -11.89 10.31 -125.98 -1.30 -13.18 16 20 C 0.22 5.71 3.53 71.98 0.25 5.97 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 C -0.09 -2.04 3.06 -10.79 -0.03 -2.07 16 23 C -0.14 -2.39 9.08 71.98 0.65 -1.74 16 24 C -0.14 -2.97 8.88 71.98 0.64 -2.33 16 25 O -0.36 -8.93 9.99 -125.98 -1.26 -10.19 16 26 C 0.06 1.47 3.16 31.09 0.10 1.57 16 27 H 0.09 1.94 7.86 -2.39 -0.02 1.92 16 28 C 0.07 1.39 6.42 86.30 0.55 1.94 16 29 N -0.85 -13.81 9.62 -186.71 -1.80 -15.61 16 30 N -0.54 -25.92 9.44 -179.58 -1.70 -27.61 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 34 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.11 6.10 6.25 -2.91 -0.02 6.08 16 36 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 37 H 0.40 17.22 6.68 -92.70 -0.62 16.60 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.06 1.11 7.80 -2.39 -0.02 1.09 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.05 1.26 7.63 -2.39 -0.02 1.24 16 46 H 0.04 1.12 7.71 -2.39 -0.02 1.10 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.35 4.88 8.99 -89.70 -0.81 4.08 16 50 H 0.36 4.38 9.08 -89.69 -0.81 3.57 16 Total: -1.00 -63.87 402.33 -1.29 -65.17 By element: Atomic # 1 Polarization: 52.20 SS G_CDS: -1.27 Total: 50.93 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.69 Total: -14.10 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.18 Total: -119.09 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -2.56 Total: -23.38 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -63.87 -1.29 -65.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159242671.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.411 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds