Wall clock time and date at job start Tue Mar 31 2020 18:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31488 * 119.81079 * 2 1 4 4 C 1.32743 * 121.72602 * 179.97438 * 3 2 1 5 5 N 1.38369 * 119.42925 * 179.97438 * 4 3 2 6 6 C 1.46492 * 120.00187 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47298 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.85920 * 305.69845 * 7 6 5 9 9 O 1.44784 * 110.97869 * 69.51019 * 7 6 5 10 10 C 1.43756 * 104.81287 * 154.21310 * 9 7 6 11 11 H 1.08996 * 109.63290 * 95.56967 * 10 9 7 12 12 C 1.53000 * 109.62868 * 215.95519 * 10 9 7 13 13 C 1.53007 * 109.46816 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47371 * 300.00007 * 12 10 9 15 15 O 1.43365 * 108.79487 * 335.68673 * 10 9 7 16 16 C 1.44243 * 107.30669 * 0.70501 * 15 10 9 17 17 H 1.09002 * 110.67696 * 263.00858 * 16 15 10 18 18 C 1.52996 * 110.73204 * 139.78114 * 16 15 10 19 19 N 1.46897 * 109.47066 * 71.35153 * 18 16 15 20 20 C 1.39713 * 121.14261 * 359.97438 * 4 3 2 21 21 C 1.36561 * 119.48744 * 0.02562 * 20 4 3 22 22 C 1.40751 * 119.81903 * 179.72378 * 2 1 3 23 23 C 1.41198 * 120.56953 * 359.97438 * 22 2 1 24 24 H 1.08005 * 120.00377 * 24.90804 * 23 22 2 25 25 C 1.39875 * 120.00277 * 204.91218 * 23 22 2 26 26 N 1.30903 * 119.99443 * 14.41045 * 25 23 22 27 27 Si 1.86796 * 120.00205 * 194.40959 * 25 23 22 28 28 H 1.48505 * 109.46853 * 90.00048 * 27 25 23 29 29 H 1.48495 * 109.47164 * 209.99632 * 27 25 23 30 30 H 1.48500 * 109.47202 * 330.00138 * 27 25 23 31 31 H 1.09002 * 109.46822 * 90.00417 * 1 2 3 32 32 H 1.08994 * 109.47214 * 330.00105 * 1 2 3 33 33 H 1.09002 * 109.46757 * 210.00285 * 1 2 3 34 34 H 0.96999 * 119.99575 * 359.97438 * 5 4 3 35 35 H 1.08999 * 109.47164 * 299.99994 * 6 5 4 36 36 H 1.08999 * 109.47433 * 60.00224 * 6 5 4 37 37 H 1.08997 * 109.47176 * 60.00391 * 12 10 9 38 38 H 1.08997 * 109.47063 * 60.00157 * 13 12 10 39 39 H 1.09006 * 109.46713 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.46804 * 299.99889 * 13 12 10 41 41 H 1.08997 * 109.47284 * 300.00318 * 14 12 10 42 42 H 1.09006 * 109.47206 * 60.00186 * 14 12 10 43 43 H 1.09006 * 109.47087 * 179.97438 * 14 12 10 44 44 H 1.09000 * 109.46900 * 191.34476 * 18 16 15 45 45 H 1.08996 * 109.47674 * 311.34841 * 18 16 15 46 46 H 1.00901 * 111.00349 * 56.04151 * 19 18 16 47 47 H 1.00900 * 111.00309 * 180.02562 * 19 18 16 48 48 H 1.07996 * 120.25461 * 180.02562 * 20 4 3 49 49 H 1.08004 * 120.78728 * 179.97438 * 21 20 4 50 50 H 0.96999 * 119.99624 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1409 0.0000 4 6 3.4874 1.1852 0.0005 5 7 4.1266 2.4124 -0.0001 6 6 5.5901 2.4760 0.0011 7 6 6.0371 3.9393 0.0008 8 1 5.5827 4.4837 -0.8270 9 8 5.7350 4.5738 1.2666 10 6 6.6914 5.6410 1.3803 11 1 6.2467 6.5707 1.0254 12 6 7.1140 5.7988 2.8423 13 6 8.1312 6.9358 2.9592 14 6 5.8865 6.1237 3.6958 15 8 7.8384 5.3203 0.5823 16 6 7.5818 4.0474 -0.0458 17 1 8.0418 3.2384 0.5218 18 6 8.0805 4.0468 -1.4922 19 7 9.5493 4.0293 -1.5037 20 6 4.2495 0.0143 0.0016 21 6 3.6199 -1.1975 0.0016 22 6 2.2069 -1.2211 0.0059 23 6 1.5092 -2.4487 0.0123 24 1 0.5047 -2.5011 -0.3809 25 6 2.1190 -3.5970 0.5282 26 7 3.2039 -3.4925 1.2531 27 14 1.3851 -5.2797 0.1825 28 1 1.9733 -5.8293 -1.0654 29 1 1.6847 -6.1925 1.3148 30 1 -0.0861 -5.1548 0.0232 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 0.8899 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 3.6056 3.2306 -0.0012 35 1 5.9747 1.9792 0.8918 36 1 5.9762 1.9777 -0.8882 37 1 7.5647 4.8702 3.1925 38 1 7.6802 7.8642 2.6091 39 1 8.4327 7.0479 4.0007 40 1 9.0058 6.7047 2.3510 41 1 5.4359 7.0523 3.3456 42 1 5.1615 5.3140 3.6126 43 1 6.1876 6.2356 4.7375 44 1 7.7027 3.1631 -2.0064 45 1 7.7238 4.9429 -2.0000 46 1 9.9057 3.2418 -0.9833 47 1 9.9036 4.0290 -2.4485 48 1 5.3282 0.0671 0.0024 49 1 4.1884 -2.1159 0.0020 50 1 3.6265 -4.2887 1.6111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159243479.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:16 Heat of formation + Delta-G solvation = -89.277957 kcal Electronic energy + Delta-G solvation = -29233.331883 eV Core-core repulsion = 25258.839861 eV Total energy + Delta-G solvation = -3974.492022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.78995 -40.47109 -37.45354 -36.78589 -36.08479 -35.29702 -34.92081 -32.98655 -32.43736 -30.86107 -28.70011 -28.08803 -27.49570 -26.07288 -25.86595 -23.89682 -23.16355 -22.56610 -21.68811 -21.21360 -19.11199 -18.54728 -18.36329 -17.76144 -17.12191 -16.89601 -16.77078 -16.42088 -15.83026 -15.45479 -15.37200 -15.21759 -15.13349 -15.02591 -14.61513 -14.49511 -14.16763 -13.90305 -13.69624 -13.52393 -13.47789 -13.38793 -13.33744 -13.13114 -13.03207 -12.84473 -12.80399 -12.59452 -12.47815 -12.22006 -12.16084 -11.95452 -11.79651 -11.53374 -11.29062 -11.19178 -10.53850 -10.39683 -10.01643 -9.89914 -9.62478 -8.63097 -8.37949 -6.09642 0.88373 1.13958 1.42495 1.54634 1.57863 2.21869 2.25797 2.45895 2.83303 2.85935 3.26089 3.55678 3.70047 3.76543 3.84250 3.91861 3.95296 4.01575 4.16664 4.20311 4.22124 4.28146 4.53079 4.56829 4.59712 4.62195 4.67109 4.68802 4.75621 4.76838 4.78207 4.94126 4.98466 5.00682 5.05109 5.07105 5.18025 5.22291 5.36429 5.38677 5.40652 5.54703 5.65779 5.89710 6.01971 6.02156 6.18054 6.49194 6.56178 6.62381 6.85302 6.96601 7.11777 7.87482 8.43199 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015723 B = 0.002443 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.447138 B =11458.915923 C =12076.752134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.022 3.978 3 N -0.538 5.538 4 C 0.289 3.711 5 N -0.732 5.732 6 C 0.155 3.845 7 C 0.051 3.949 8 H 0.102 0.898 9 O -0.383 6.383 10 C 0.229 3.771 11 H 0.089 0.911 12 C -0.106 4.106 13 C -0.134 4.134 14 C -0.140 4.140 15 O -0.371 6.371 16 C 0.068 3.932 17 H 0.085 0.915 18 C 0.067 3.933 19 N -0.853 5.853 20 C -0.215 4.215 21 C -0.108 4.108 22 C -0.003 4.003 23 C -0.479 4.479 24 H 0.082 0.918 25 C 0.030 3.970 26 N -0.841 5.841 27 Si 0.981 3.019 28 H -0.265 1.265 29 H -0.274 1.274 30 H -0.257 1.257 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.396 0.604 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.347 0.653 47 H 0.355 0.645 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.202 14.275 -2.144 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.116 4.116 3 N -0.255 5.255 4 C 0.055 3.945 5 N -0.371 5.371 6 C 0.030 3.970 7 C -0.008 4.008 8 H 0.120 0.880 9 O -0.304 6.304 10 C 0.135 3.865 11 H 0.107 0.893 12 C -0.125 4.125 13 C -0.191 4.191 14 C -0.198 4.198 15 O -0.292 6.292 16 C 0.010 3.990 17 H 0.103 0.897 18 C -0.064 4.064 19 N -0.385 5.385 20 C -0.239 4.239 21 C -0.135 4.135 22 C -0.009 4.009 23 C -0.510 4.510 24 H 0.101 0.899 25 C -0.182 4.182 26 N -0.469 5.469 27 Si 0.802 3.198 28 H -0.190 1.190 29 H -0.199 1.199 30 H -0.181 1.181 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.230 0.770 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.160 0.840 47 H 0.169 0.831 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.035 15.609 -1.496 19.174 hybrid contribution -0.039 -2.336 -0.366 2.365 sum 10.996 13.273 -1.862 17.336 Atomic orbital electron populations 1.20242 0.89067 1.01524 1.01336 1.21281 0.96446 0.87241 1.06646 1.66436 1.08168 1.31075 1.19803 1.17996 0.88103 0.86274 1.02101 1.43533 1.04458 1.03816 1.85281 1.21130 0.80646 0.93494 1.01771 1.24129 0.94883 0.94148 0.87607 0.87988 1.89339 1.54759 1.47718 1.38541 1.24296 0.78775 0.90808 0.92660 0.89339 1.21516 0.97655 1.00470 0.92877 1.21664 0.98084 0.96909 1.02487 1.21704 0.96637 1.01580 0.99836 1.88978 1.39469 1.37060 1.63693 1.23709 0.92666 0.86974 0.95688 0.89705 1.21857 0.89520 1.02361 0.92629 1.58561 1.06882 1.51866 1.21160 1.20974 0.99375 0.92331 1.11268 1.21357 0.95053 0.96700 1.00349 1.18527 0.92922 0.94094 0.95314 1.19574 1.01819 0.92801 1.36784 0.89946 1.26693 0.94825 1.04675 0.92021 1.69871 1.19010 1.32551 1.25465 0.85213 0.79728 0.76255 0.78588 1.18967 1.19876 1.18055 0.91866 0.92270 0.91519 0.77021 0.93071 0.89854 0.91685 0.91857 0.91219 0.92520 0.91721 0.93768 0.91197 0.92113 0.89875 0.84029 0.83079 0.86203 0.86536 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.73 9.59 71.24 0.68 -2.05 16 2 C 0.02 1.12 6.86 43.23 0.30 1.42 16 3 N -0.54 -26.47 10.29 -179.36 -1.85 -28.31 16 4 C 0.29 13.10 7.64 133.32 1.02 14.12 16 5 N -0.73 -25.97 5.70 -344.88 -1.97 -27.94 16 6 C 0.15 4.21 4.64 86.38 0.40 4.61 16 7 C 0.05 1.13 3.01 31.25 0.09 1.22 16 8 H 0.10 2.05 8.04 -2.39 -0.02 2.04 16 9 O -0.38 -10.02 10.41 -126.22 -1.31 -11.33 16 10 C 0.23 5.06 3.50 71.98 0.25 5.31 16 11 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 12 C -0.11 -2.15 2.94 -10.79 -0.03 -2.18 16 13 C -0.13 -2.20 9.05 71.98 0.65 -1.55 16 14 C -0.14 -2.71 9.05 71.98 0.65 -2.06 16 15 O -0.37 -8.35 10.28 -126.22 -1.30 -9.65 16 16 C 0.07 1.34 3.34 31.25 0.10 1.45 16 17 H 0.09 1.70 8.04 -2.39 -0.02 1.68 16 18 C 0.07 1.05 6.53 86.30 0.56 1.61 16 19 N -0.85 -12.41 9.62 -186.73 -1.80 -14.20 16 20 C -0.22 -9.98 9.24 22.23 0.21 -9.78 16 21 C -0.11 -5.66 8.73 22.64 0.20 -5.46 16 22 C 0.00 -0.19 5.59 -21.18 -0.12 -0.31 16 23 C -0.48 -25.22 8.16 23.39 0.19 -25.03 16 24 H 0.08 4.13 6.83 -2.91 -0.02 4.11 16 25 C 0.03 1.51 5.23 85.23 0.45 1.95 16 26 N -0.84 -43.83 10.83 21.82 0.24 -43.60 16 27 Si 0.98 38.01 29.58 68.60 2.03 40.04 16 28 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 29 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 30 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 31 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 2.82 6.74 -2.39 -0.02 2.80 16 34 H 0.40 13.60 8.59 -92.71 -0.80 12.80 16 35 H 0.05 1.53 7.90 -2.39 -0.02 1.51 16 36 H 0.08 2.02 7.80 -2.39 -0.02 2.00 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 40 H 0.06 1.03 7.70 -2.39 -0.02 1.01 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 1.05 7.69 -2.38 -0.02 1.03 16 43 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.06 0.81 8.04 -2.39 -0.02 0.79 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.35 4.47 8.99 -89.69 -0.81 3.66 16 47 H 0.35 3.81 9.08 -89.69 -0.81 3.00 16 48 H 0.12 4.78 6.64 -2.91 -0.02 4.76 16 49 H 0.12 6.30 6.17 -2.91 -0.02 6.29 16 50 H 0.28 13.49 8.30 -92.71 -0.77 12.72 16 Total: -1.00 -64.10 400.95 -1.80 -65.90 By element: Atomic # 1 Polarization: 47.24 SS G_CDS: -1.45 Total: 45.79 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 5.60 Total: -16.71 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -5.37 Total: -114.05 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -2.61 Total: -20.98 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -64.10 -1.80 -65.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159243479.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.381 kcal (2) G-P(sol) polarization free energy of solvation -64.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds