Wall clock time and date at job start Tue Mar 31 2020 19:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.70405 * 2 1 4 4 O 1.21278 * 120.00103 * 114.24208 * 3 2 1 5 5 N 1.34777 * 119.99808 * 294.24219 * 3 2 1 6 6 C 1.46494 * 120.00112 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47556 * 179.97438 * 6 5 3 8 8 C 1.50697 * 109.47252 * 180.02562 * 7 6 5 9 9 C 1.29446 * 117.69731 * 95.00139 * 8 7 6 10 10 C 1.50321 * 123.65360 * 180.85838 * 9 8 7 11 11 N 1.47004 * 109.16480 * 349.02213 * 10 9 8 12 12 C 1.36940 * 121.37362 * 222.97142 * 11 10 9 13 13 H 1.07998 * 120.00255 * 150.93756 * 12 11 10 14 14 C 1.38815 * 120.00004 * 330.93619 * 12 11 10 15 15 N 1.31624 * 119.99825 * 348.71158 * 14 12 11 16 16 Si 1.86799 * 120.00234 * 168.71822 * 14 12 11 17 17 H 1.48492 * 109.47250 * 84.98291 * 16 14 12 18 18 H 1.48499 * 109.47223 * 204.98669 * 16 14 12 19 19 H 1.48501 * 109.46668 * 324.98348 * 16 14 12 20 20 C 1.47335 * 117.25077 * 42.94740 * 11 10 9 21 21 C 1.49977 * 117.69106 * 274.73954 * 8 7 6 22 22 C 1.53347 * 109.67218 * 239.47937 * 2 1 3 23 23 C 1.52925 * 108.67510 * 172.73688 * 22 2 1 24 24 N 1.45749 * 110.48660 * 50.75485 * 23 22 2 25 25 C 1.33352 * 124.10758 * 340.90524 * 24 23 22 26 26 O 1.21278 * 118.24752 * 182.22090 * 25 24 23 27 27 C 1.50177 * 123.50894 * 2.24512 * 25 24 23 28 28 H 1.09007 * 109.47210 * 180.51864 * 1 2 3 29 29 H 1.09005 * 109.47042 * 300.51440 * 1 2 3 30 30 H 1.08998 * 109.47108 * 60.51522 * 1 2 3 31 31 H 0.97003 * 119.99980 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47019 * 300.00256 * 6 5 3 33 33 H 1.09007 * 109.47169 * 59.99921 * 6 5 3 34 34 H 1.08998 * 109.46735 * 300.00150 * 7 6 5 35 35 H 1.08994 * 109.46618 * 60.00075 * 7 6 5 36 36 H 1.08000 * 118.17221 * 0.87907 * 9 8 7 37 37 H 1.09003 * 109.52331 * 108.92963 * 10 9 8 38 38 H 1.09002 * 109.52131 * 229.11539 * 10 9 8 39 39 H 0.96998 * 119.99695 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.77821 * 57.81121 * 20 11 10 41 41 H 1.09001 * 109.77906 * 178.56592 * 20 11 10 42 42 H 1.08993 * 109.31087 * 281.28783 * 21 8 7 43 43 H 1.08997 * 109.31732 * 40.72017 * 21 8 7 44 44 H 1.08998 * 109.60102 * 52.98346 * 22 2 1 45 45 H 1.08998 * 109.60903 * 292.49287 * 22 2 1 46 46 H 1.08997 * 109.30324 * 171.06809 * 23 22 2 47 47 H 1.08997 * 109.29671 * 290.65169 * 23 22 2 48 48 H 0.96995 * 117.94757 * 160.92691 * 24 23 22 49 49 H 1.09000 * 109.40443 * 102.54924 * 27 25 24 50 50 H 1.09004 * 109.40219 * 222.37357 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0381 1.4187 0.0000 4 8 2.6485 1.8442 0.9577 5 7 1.8141 2.2147 -1.0643 6 6 2.3075 3.5941 -1.0641 7 6 1.9225 4.2737 -2.3797 8 6 2.4306 5.6924 -2.3798 9 6 3.5753 5.9215 -2.9392 10 6 4.2162 7.2799 -2.9990 11 7 3.2390 8.2936 -2.5765 12 6 3.1066 9.4797 -3.2480 13 1 2.1537 9.9878 -3.2640 14 6 4.1972 10.0292 -3.9080 15 7 5.4023 9.5381 -3.7096 16 14 3.9548 11.4654 -5.0775 17 1 3.9600 12.7359 -4.3090 18 1 5.0565 11.4846 -6.0731 19 1 2.6551 11.3173 -5.7804 20 6 2.4076 7.9806 -1.4011 21 6 1.5717 6.7404 -1.7369 22 6 2.0462 -0.7333 -1.2439 23 6 3.5643 -0.5640 -1.3174 24 7 4.1794 -0.9199 -0.0449 25 6 3.5211 -0.9790 1.1133 26 8 4.1475 -1.2473 2.1165 27 6 2.0454 -0.7315 1.2418 28 1 -0.3634 -1.0277 0.0093 29 1 -0.3633 0.5218 0.8854 30 1 -0.3633 0.5058 -0.8945 31 1 1.3261 1.8742 -1.8304 32 1 1.8642 4.1384 -0.2303 33 1 3.3926 3.5918 -0.9607 34 1 2.3661 3.7292 -3.2133 35 1 0.8375 4.2760 -2.4835 36 1 4.0988 5.0904 -3.3882 37 1 5.0787 7.3054 -2.3329 38 1 4.5372 7.4866 -4.0200 39 1 6.1643 9.9218 -4.1711 40 1 3.0460 7.7780 -0.5412 41 1 1.7484 8.8204 -1.1813 42 1 0.7684 7.0166 -2.4198 43 1 1.1398 6.3398 -0.8198 44 1 1.5872 -0.3076 -2.1362 45 1 1.7995 -1.7926 -1.1728 46 1 3.9611 -1.2081 -2.1020 47 1 3.8000 0.4744 -1.5501 48 1 5.1271 -1.1264 -0.0401 49 1 1.5259 -1.6844 1.3425 50 1 1.8562 -0.1210 2.1247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160478842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:27 Heat of formation + Delta-G solvation = -49.396148 kcal Electronic energy + Delta-G solvation = -29416.138527 eV Core-core repulsion = 25443.375910 eV Total energy + Delta-G solvation = -3972.762617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.45583 -39.34225 -37.95303 -36.78813 -35.52849 -34.51698 -33.56065 -31.40656 -30.13646 -29.84572 -28.86398 -28.28615 -25.59137 -24.27308 -23.69871 -22.83761 -22.32995 -21.00931 -20.74831 -19.29376 -17.83070 -17.62266 -16.79538 -16.56914 -16.19008 -16.04061 -15.58989 -15.38893 -15.06658 -14.64184 -14.43284 -14.18503 -13.98932 -13.77080 -13.63472 -13.46736 -13.28140 -13.04656 -12.76496 -12.63062 -12.43634 -12.24526 -12.06149 -12.04030 -11.77780 -11.57996 -11.44082 -11.29765 -11.03704 -10.90100 -10.74652 -10.35277 -10.28907 -10.02345 -9.94794 -9.84519 -9.55018 -9.39079 -9.20257 -8.65516 -7.95841 -6.65518 -5.79561 -3.23618 2.39179 2.46714 2.73565 2.99431 3.06446 3.36864 3.43006 3.44715 3.91955 4.02406 4.06278 4.27566 4.48397 4.50879 4.75190 4.84613 4.98930 5.05786 5.09172 5.11285 5.13631 5.20378 5.22702 5.27440 5.40405 5.44107 5.52466 5.54873 5.59020 5.62087 5.76500 5.96539 6.01274 6.13053 6.19044 6.27986 6.38538 6.48587 6.54912 6.79341 6.91306 7.04893 7.21012 7.24289 7.31778 7.39525 7.75589 7.85896 7.98420 8.00215 8.41971 9.20907 9.82238 10.43692 11.30732 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.002127 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.795629 B =13159.371156 C =13476.312225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C 0.517 3.483 4 O -0.528 6.528 5 N -0.727 5.727 6 C 0.124 3.876 7 C -0.090 4.090 8 C -0.143 4.143 9 C -0.146 4.146 10 C 0.198 3.802 11 N -0.595 5.595 12 C -0.248 4.248 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.909 5.909 16 Si 0.905 3.095 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.143 3.857 21 C -0.091 4.091 22 C -0.126 4.126 23 C 0.103 3.897 24 N -0.721 5.721 25 C 0.530 3.470 26 O -0.555 6.555 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.398 0.602 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.254 0.746 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.400 0.600 49 H 0.107 0.893 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 -24.363 1.486 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C 0.302 3.698 4 O -0.403 6.403 5 N -0.378 5.378 6 C 0.001 3.999 7 C -0.128 4.128 8 C -0.143 4.143 9 C -0.166 4.166 10 C 0.074 3.926 11 N -0.318 5.318 12 C -0.378 4.378 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.553 5.553 16 Si 0.735 3.265 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.016 3.984 21 C -0.130 4.130 22 C -0.164 4.164 23 C -0.021 4.021 24 N -0.373 5.373 25 C 0.317 3.683 26 O -0.433 6.433 27 C -0.153 4.153 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.106 0.894 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.236 0.764 49 H 0.125 0.875 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.098 -24.031 2.623 26.198 hybrid contribution 0.124 0.543 -1.243 1.362 sum -9.974 -23.488 1.380 25.555 Atomic orbital electron populations 1.21835 0.91094 1.03399 1.03348 1.20991 0.98203 0.92882 0.96894 1.20309 0.79650 0.87056 0.82756 1.90778 1.40037 1.75353 1.34130 1.46085 1.58425 1.13762 1.19556 1.21459 0.99765 0.79962 0.98728 1.20899 1.01082 0.94901 0.95923 1.20223 0.97331 0.93135 1.03660 1.23124 0.95823 1.00441 0.97169 1.19653 0.90191 0.82135 1.00663 1.44070 1.42573 1.15909 1.29247 1.19121 0.94095 0.97863 1.26725 0.91684 1.25137 0.94952 0.98218 1.01326 1.69985 0.97773 1.43369 1.44197 0.86274 0.77134 0.82470 0.80632 1.21277 1.21584 1.20589 1.21000 0.93179 0.94230 0.89984 1.20790 0.97829 0.95955 0.98419 1.22012 0.94847 1.02103 0.97398 1.21447 0.93443 1.01501 0.85748 1.45387 1.13509 1.70806 1.07635 1.19960 0.90316 0.75437 0.82580 1.90757 1.68236 1.49166 1.35186 1.21592 0.92072 1.02438 0.99246 0.90888 0.91366 0.91435 0.76823 0.91228 0.91331 0.91589 0.91473 0.89155 0.94323 0.89695 0.93583 0.95845 0.92559 0.91948 0.92965 0.89024 0.89409 0.89816 0.91392 0.76448 0.87515 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 8.45 37.16 0.31 -0.29 16 2 C -0.09 -0.57 0.66 -155.45 -0.10 -0.67 16 3 C 0.52 5.39 4.82 -10.99 -0.05 5.33 16 4 O -0.53 -8.23 15.33 5.56 0.09 -8.14 16 5 N -0.73 -6.34 5.31 -60.30 -0.32 -6.66 16 6 C 0.12 1.46 5.66 -4.04 -0.02 1.44 16 7 C -0.09 -1.06 5.32 -27.88 -0.15 -1.21 16 8 C -0.14 -2.36 5.11 -100.99 -0.52 -2.87 16 9 C -0.15 -2.74 9.47 -35.78 -0.34 -3.08 16 10 C 0.20 4.74 5.16 -5.10 -0.03 4.71 16 11 N -0.59 -15.01 2.99 -173.57 -0.52 -15.53 16 12 C -0.25 -6.83 9.67 -15.06 -0.15 -6.97 16 13 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 14 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 15 N -0.91 -26.31 11.20 55.49 0.62 -25.69 16 16 Si 0.91 21.62 29.57 -169.99 -5.03 16.59 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.14 3.01 6.59 -3.44 -0.02 2.99 16 21 C -0.09 -1.57 5.95 -28.08 -0.17 -1.74 16 22 C -0.13 -0.51 4.72 -26.59 -0.13 -0.64 16 23 C 0.10 0.60 6.61 -4.49 -0.03 0.57 16 24 N -0.72 -6.44 5.44 -61.39 -0.33 -6.77 16 25 C 0.53 6.26 6.94 -11.87 -0.08 6.17 16 26 O -0.56 -9.06 17.78 5.56 0.10 -8.96 16 27 C -0.11 -0.99 4.47 -28.10 -0.13 -1.11 16 28 H 0.07 0.19 8.14 -51.92 -0.42 -0.23 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.22 8.02 -51.93 -0.42 -0.20 16 31 H 0.40 2.20 7.64 -40.82 -0.31 1.89 16 32 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.70 7.78 -51.93 -0.40 0.29 16 35 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.09 1.48 7.73 -52.49 -0.41 1.08 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.23 6.67 -51.93 -0.35 1.89 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 44 H 0.09 0.18 7.57 -51.93 -0.39 -0.21 16 45 H 0.09 0.25 8.12 -51.93 -0.42 -0.17 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.07 0.49 7.28 -51.93 -0.38 0.11 16 48 H 0.40 3.36 8.80 -40.82 -0.36 3.00 16 49 H 0.11 0.63 8.10 -51.93 -0.42 0.21 16 50 H 0.11 1.19 7.64 -51.93 -0.40 0.79 16 LS Contribution 394.41 15.07 5.94 5.94 Total: -1.00 -36.05 394.41 -9.57 -45.62 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.44 Total: 1.00 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.68 Total: 2.60 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.55 Total: -54.65 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.18 Total: -17.11 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.05 -9.57 -45.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160478842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.777 kcal (2) G-P(sol) polarization free energy of solvation -36.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds