Wall clock time and date at job start Tue Mar 31 2020 19:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.70405 * 2 1 4 4 O 1.21278 * 120.00103 * 114.24208 * 3 2 1 5 5 N 1.34777 * 119.99808 * 294.24219 * 3 2 1 6 6 C 1.46494 * 120.00112 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47556 * 179.97438 * 6 5 3 8 8 C 1.50697 * 109.47252 * 180.02562 * 7 6 5 9 9 C 1.29446 * 117.69731 * 95.00139 * 8 7 6 10 10 C 1.50321 * 123.65360 * 180.85838 * 9 8 7 11 11 N 1.47004 * 109.16480 * 349.02213 * 10 9 8 12 12 C 1.36940 * 121.37362 * 222.97142 * 11 10 9 13 13 H 1.07998 * 120.00255 * 150.93756 * 12 11 10 14 14 C 1.38815 * 120.00004 * 330.93619 * 12 11 10 15 15 N 1.31624 * 119.99825 * 348.71158 * 14 12 11 16 16 Si 1.86799 * 120.00234 * 168.71822 * 14 12 11 17 17 H 1.48492 * 109.47250 * 84.98291 * 16 14 12 18 18 H 1.48499 * 109.47223 * 204.98669 * 16 14 12 19 19 H 1.48501 * 109.46668 * 324.98348 * 16 14 12 20 20 C 1.47335 * 117.25077 * 42.94740 * 11 10 9 21 21 C 1.49977 * 117.69106 * 274.73954 * 8 7 6 22 22 C 1.53347 * 109.67218 * 239.47937 * 2 1 3 23 23 C 1.52925 * 108.67510 * 172.73688 * 22 2 1 24 24 N 1.45749 * 110.48660 * 50.75485 * 23 22 2 25 25 C 1.33352 * 124.10758 * 340.90524 * 24 23 22 26 26 O 1.21278 * 118.24752 * 182.22090 * 25 24 23 27 27 C 1.50177 * 123.50894 * 2.24512 * 25 24 23 28 28 H 1.09007 * 109.47210 * 180.51864 * 1 2 3 29 29 H 1.09005 * 109.47042 * 300.51440 * 1 2 3 30 30 H 1.08998 * 109.47108 * 60.51522 * 1 2 3 31 31 H 0.97003 * 119.99980 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47019 * 300.00256 * 6 5 3 33 33 H 1.09007 * 109.47169 * 59.99921 * 6 5 3 34 34 H 1.08998 * 109.46735 * 300.00150 * 7 6 5 35 35 H 1.08994 * 109.46618 * 60.00075 * 7 6 5 36 36 H 1.08000 * 118.17221 * 0.87907 * 9 8 7 37 37 H 1.09003 * 109.52331 * 108.92963 * 10 9 8 38 38 H 1.09002 * 109.52131 * 229.11539 * 10 9 8 39 39 H 0.96998 * 119.99695 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.77821 * 57.81121 * 20 11 10 41 41 H 1.09001 * 109.77906 * 178.56592 * 20 11 10 42 42 H 1.08993 * 109.31087 * 281.28783 * 21 8 7 43 43 H 1.08997 * 109.31732 * 40.72017 * 21 8 7 44 44 H 1.08998 * 109.60102 * 52.98346 * 22 2 1 45 45 H 1.08998 * 109.60903 * 292.49287 * 22 2 1 46 46 H 1.08997 * 109.30324 * 171.06809 * 23 22 2 47 47 H 1.08997 * 109.29671 * 290.65169 * 23 22 2 48 48 H 0.96995 * 117.94757 * 160.92691 * 24 23 22 49 49 H 1.09000 * 109.40443 * 102.54924 * 27 25 24 50 50 H 1.09004 * 109.40219 * 222.37357 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0381 1.4187 0.0000 4 8 2.6485 1.8442 0.9577 5 7 1.8141 2.2147 -1.0643 6 6 2.3075 3.5941 -1.0641 7 6 1.9225 4.2737 -2.3797 8 6 2.4306 5.6924 -2.3798 9 6 3.5753 5.9215 -2.9392 10 6 4.2162 7.2799 -2.9990 11 7 3.2390 8.2936 -2.5765 12 6 3.1066 9.4797 -3.2480 13 1 2.1537 9.9878 -3.2640 14 6 4.1972 10.0292 -3.9080 15 7 5.4023 9.5381 -3.7096 16 14 3.9548 11.4654 -5.0775 17 1 3.9600 12.7359 -4.3090 18 1 5.0565 11.4846 -6.0731 19 1 2.6551 11.3173 -5.7804 20 6 2.4076 7.9806 -1.4011 21 6 1.5717 6.7404 -1.7369 22 6 2.0462 -0.7333 -1.2439 23 6 3.5643 -0.5640 -1.3174 24 7 4.1794 -0.9199 -0.0449 25 6 3.5211 -0.9790 1.1133 26 8 4.1475 -1.2473 2.1165 27 6 2.0454 -0.7315 1.2418 28 1 -0.3634 -1.0277 0.0093 29 1 -0.3633 0.5218 0.8854 30 1 -0.3633 0.5058 -0.8945 31 1 1.3261 1.8742 -1.8304 32 1 1.8642 4.1384 -0.2303 33 1 3.3926 3.5918 -0.9607 34 1 2.3661 3.7292 -3.2133 35 1 0.8375 4.2760 -2.4835 36 1 4.0988 5.0904 -3.3882 37 1 5.0787 7.3054 -2.3329 38 1 4.5372 7.4866 -4.0200 39 1 6.1643 9.9218 -4.1711 40 1 3.0460 7.7780 -0.5412 41 1 1.7484 8.8204 -1.1813 42 1 0.7684 7.0166 -2.4198 43 1 1.1398 6.3398 -0.8198 44 1 1.5872 -0.3076 -2.1362 45 1 1.7995 -1.7926 -1.1728 46 1 3.9611 -1.2081 -2.1020 47 1 3.8000 0.4744 -1.5501 48 1 5.1271 -1.1264 -0.0401 49 1 1.5259 -1.6844 1.3425 50 1 1.8562 -0.1210 2.1247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160478842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:26 Heat of formation + Delta-G solvation = -76.482861 kcal Electronic energy + Delta-G solvation = -29417.313095 eV Core-core repulsion = 25443.375910 eV Total energy + Delta-G solvation = -3973.937185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17171 -40.26155 -39.45033 -37.57926 -36.74945 -35.25102 -34.99659 -33.12927 -31.51106 -30.77696 -30.11771 -28.87825 -27.20038 -25.14909 -24.61001 -24.27291 -23.47685 -22.47233 -21.55435 -20.04782 -19.44659 -18.54383 -17.72971 -17.38771 -17.25206 -17.01659 -16.79646 -16.69716 -16.22479 -15.78597 -15.57822 -15.31113 -15.22967 -14.95357 -14.81676 -14.48751 -14.32954 -14.01852 -13.84328 -13.46891 -13.37776 -13.19594 -13.14252 -12.96443 -12.85828 -12.77454 -12.68211 -12.59797 -12.34576 -12.23080 -12.18808 -11.89432 -11.75744 -11.68868 -11.23034 -10.88633 -10.75343 -10.69517 -10.16930 -10.04703 -9.48775 -8.69001 -7.89232 -5.37295 1.42365 1.46116 1.47222 1.56570 1.60346 1.62052 2.17556 2.34500 2.49750 3.28404 3.38658 3.53077 3.56786 3.67648 3.76681 3.94834 3.98480 4.13682 4.16901 4.29784 4.37510 4.40047 4.54638 4.55943 4.59325 4.68677 4.70359 4.73827 4.86741 4.87127 4.91676 4.94584 4.98813 5.00813 5.08992 5.16256 5.19064 5.23858 5.34069 5.39240 5.44190 5.49914 5.60474 5.77537 5.88363 6.29455 6.31400 6.35071 6.56818 7.13046 7.16956 7.27251 7.81393 8.38813 9.19084 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.002127 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.795629 B =13159.371156 C =13476.312225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C 0.513 3.487 4 O -0.589 6.589 5 N -0.707 5.707 6 C 0.133 3.867 7 C -0.076 4.076 8 C -0.120 4.120 9 C -0.175 4.175 10 C 0.209 3.791 11 N -0.615 5.615 12 C -0.261 4.261 13 H 0.069 0.931 14 C -0.054 4.054 15 N -0.942 5.942 16 Si 0.973 3.027 17 H -0.283 1.283 18 H -0.292 1.292 19 H -0.268 1.268 20 C 0.134 3.866 21 C -0.087 4.087 22 C -0.121 4.121 23 C 0.093 3.907 24 N -0.716 5.716 25 C 0.518 3.482 26 O -0.617 6.617 27 C -0.113 4.113 28 H 0.099 0.901 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.419 0.581 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.115 0.885 37 H -0.001 1.001 38 H 0.050 0.950 39 H 0.250 0.750 40 H 0.013 0.987 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.053 0.947 48 H 0.399 0.601 49 H 0.139 0.861 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 -26.648 -0.766 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 C 0.301 3.699 4 O -0.468 6.468 5 N -0.360 5.360 6 C 0.009 3.991 7 C -0.113 4.113 8 C -0.121 4.121 9 C -0.195 4.195 10 C 0.084 3.916 11 N -0.339 5.339 12 C -0.391 4.391 13 H 0.087 0.913 14 C -0.249 4.249 15 N -0.588 5.588 16 Si 0.800 3.200 17 H -0.210 1.210 18 H -0.219 1.219 19 H -0.193 1.193 20 C 0.009 3.991 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.030 4.030 24 N -0.366 5.366 25 C 0.307 3.693 26 O -0.500 6.500 27 C -0.153 4.153 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.257 0.743 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.017 0.983 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.145 0.855 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.072 0.928 48 H 0.233 0.767 49 H 0.157 0.843 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.713 -26.335 0.299 29.693 hybrid contribution 1.219 1.286 -0.468 1.832 sum -12.494 -25.049 -0.169 27.993 Atomic orbital electron populations 1.21886 0.88567 1.05273 1.03655 1.20990 0.99887 0.89863 0.97155 1.21088 0.78430 0.88564 0.81859 1.90768 1.42805 1.76770 1.36486 1.45814 1.57846 1.12310 1.19998 1.21117 0.98209 0.81598 0.98188 1.20794 1.02784 0.91341 0.96402 1.20608 0.95747 0.95752 1.00017 1.22815 0.97589 0.98164 1.00895 1.19292 0.89588 0.85066 0.97660 1.44371 1.43164 1.15843 1.30515 1.19490 0.94254 0.98656 1.26720 0.91333 1.25961 0.94666 1.01048 1.03199 1.70175 0.98451 1.44838 1.45317 0.85212 0.77240 0.79132 0.78376 1.20985 1.21869 1.19303 1.21192 0.93019 0.96444 0.88444 1.20739 0.97328 0.94285 1.00171 1.22158 0.93097 1.03528 0.97068 1.21784 0.95162 1.01362 0.84700 1.45514 1.13636 1.69193 1.08262 1.20612 0.91659 0.74577 0.82454 1.90716 1.69701 1.52226 1.37362 1.21625 0.90311 1.03841 0.99500 0.88248 0.92939 0.89336 0.74287 0.92897 0.93927 0.89297 0.88534 0.86710 0.98317 0.93189 0.94110 0.96907 0.92389 0.91077 0.89805 0.85538 0.86911 0.86645 0.92828 0.76653 0.84314 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 8.45 71.98 0.61 0.04 16 2 C -0.08 -0.77 0.66 -52.79 -0.03 -0.80 16 3 C 0.51 9.80 4.82 87.66 0.42 10.22 16 4 O -0.59 -18.74 15.33 -3.02 -0.05 -18.79 16 5 N -0.71 -9.98 5.31 -463.07 -2.46 -12.44 16 6 C 0.13 2.83 5.66 86.38 0.49 3.32 16 7 C -0.08 -1.46 5.32 29.85 0.16 -1.30 16 8 C -0.12 -3.72 5.11 -15.13 -0.08 -3.79 16 9 C -0.18 -6.54 9.47 27.11 0.26 -6.29 16 10 C 0.21 10.47 5.16 85.42 0.44 10.91 16 11 N -0.61 -31.88 2.99 -703.04 -2.10 -33.98 16 12 C -0.26 -14.63 9.67 84.03 0.81 -13.82 16 13 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 14 C -0.05 -3.05 5.07 84.86 0.43 -2.62 16 15 N -0.94 -56.91 11.20 21.65 0.24 -56.67 16 16 Si 0.97 45.18 29.57 68.60 2.03 47.21 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.13 5.70 6.59 86.32 0.57 6.27 16 21 C -0.09 -2.80 5.95 29.72 0.18 -2.62 16 22 C -0.12 -0.39 4.72 30.69 0.14 -0.24 16 23 C 0.09 0.79 6.61 86.50 0.57 1.37 16 24 N -0.72 -12.25 5.44 -467.33 -2.54 -14.79 16 25 C 0.52 12.37 6.94 87.71 0.61 12.98 16 26 O -0.62 -21.36 17.78 -3.02 -0.05 -21.41 16 27 C -0.11 -1.85 4.47 29.70 0.13 -1.72 16 28 H 0.10 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.09 0.04 8.02 -2.39 -0.02 0.02 16 31 H 0.42 2.34 7.64 -92.71 -0.71 1.64 16 32 H 0.05 1.33 8.11 -2.39 -0.02 1.31 16 33 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.09 1.41 7.78 -2.39 -0.02 1.40 16 35 H 0.10 1.42 8.11 -2.39 -0.02 1.40 16 36 H 0.12 3.65 7.73 -2.91 -0.02 3.63 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.05 2.79 6.67 -2.39 -0.02 2.77 16 39 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 41 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 44 H 0.13 -0.39 7.57 -2.39 -0.02 -0.41 16 45 H 0.11 -0.05 8.12 -2.39 -0.02 -0.07 16 46 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.05 0.64 7.28 -2.39 -0.02 0.62 16 48 H 0.40 6.75 8.80 -92.71 -0.82 5.93 16 49 H 0.14 1.29 8.10 -2.39 -0.02 1.27 16 50 H 0.08 1.88 7.64 -2.39 -0.02 1.86 16 Total: -1.00 -87.47 394.41 0.20 -87.27 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -0.58 Total: 11.71 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.71 Total: 11.89 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -6.86 Total: -117.88 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -0.10 Total: -40.20 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -87.47 0.20 -87.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160478842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.786 kcal (2) G-P(sol) polarization free energy of solvation -87.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds