Wall clock time and date at job start Tue Mar 31 2020 19:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.67173 * 2 1 4 4 O 1.21283 * 119.99820 * 119.99603 * 3 2 1 5 5 N 1.34780 * 119.99963 * 299.99786 * 3 2 1 6 6 C 1.46497 * 119.99867 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47170 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.47265 * 180.02562 * 7 6 5 9 9 C 1.29454 * 117.68934 * 95.00474 * 8 7 6 10 10 C 1.50327 * 123.64523 * 180.57271 * 9 8 7 11 11 N 1.47007 * 109.16664 * 349.02286 * 10 9 8 12 12 C 1.36935 * 121.37293 * 222.96734 * 11 10 9 13 13 H 1.07999 * 120.00090 * 155.97114 * 12 11 10 14 14 C 1.38811 * 120.00342 * 335.97276 * 12 11 10 15 15 N 1.31620 * 119.99777 * 344.51356 * 14 12 11 16 16 Si 1.86794 * 120.00177 * 164.51071 * 14 12 11 17 17 H 1.48493 * 109.47247 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46936 * 120.00457 * 16 14 12 19 19 H 1.48504 * 109.47245 * 239.99989 * 16 14 12 20 20 C 1.47336 * 117.25239 * 42.94576 * 11 10 9 21 21 C 1.49971 * 117.69202 * 274.74195 * 8 7 6 22 22 C 1.53347 * 109.67193 * 120.49333 * 2 1 3 23 23 C 1.52925 * 108.67023 * 52.23810 * 22 2 1 24 24 N 1.45760 * 110.48764 * 50.75498 * 23 22 2 25 25 C 1.33357 * 124.10437 * 340.90121 * 24 23 22 26 26 O 1.21281 * 118.24724 * 182.26930 * 25 24 23 27 27 C 1.50198 * 123.51985 * 2.22593 * 25 24 23 28 28 H 1.09000 * 109.46545 * 60.00220 * 1 2 3 29 29 H 1.08993 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47395 * 300.00189 * 1 2 3 31 31 H 0.96996 * 119.99711 * 359.97438 * 5 3 2 32 32 H 1.09001 * 109.47163 * 60.00077 * 6 5 3 33 33 H 1.08993 * 109.47575 * 299.99930 * 6 5 3 34 34 H 1.09001 * 109.46615 * 60.00231 * 7 6 5 35 35 H 1.08993 * 109.47214 * 300.00640 * 7 6 5 36 36 H 1.07998 * 118.17650 * 0.55053 * 9 8 7 37 37 H 1.09000 * 109.51773 * 108.92785 * 10 9 8 38 38 H 1.08998 * 109.51983 * 229.11665 * 10 9 8 39 39 H 0.96997 * 120.00263 * 179.97438 * 15 14 12 40 40 H 1.09009 * 109.77446 * 57.81019 * 20 11 10 41 41 H 1.08999 * 109.77915 * 178.56229 * 20 11 10 42 42 H 1.09004 * 109.31129 * 281.57081 * 21 8 7 43 43 H 1.08999 * 109.31625 * 41.00152 * 21 8 7 44 44 H 1.09001 * 109.60471 * 171.99315 * 22 2 1 45 45 H 1.09001 * 109.60608 * 292.32628 * 22 2 1 46 46 H 1.09004 * 109.29825 * 171.06415 * 23 22 2 47 47 H 1.08997 * 109.30796 * 290.44302 * 23 22 2 48 48 H 0.97001 * 117.94685 * 160.91908 * 24 23 22 49 49 H 1.09000 * 109.42180 * 222.31292 * 27 25 24 50 50 H 1.09006 * 109.38739 * 102.56399 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.7359 1.8133 0.9097 5 7 1.7147 2.2501 -1.0109 6 6 2.2074 3.6297 -1.0106 7 6 1.7006 4.3525 -2.2602 8 6 2.2079 5.7716 -2.2602 9 6 3.2949 6.0218 -2.9173 10 6 3.9254 7.3842 -2.9965 11 7 2.9905 8.3809 -2.4545 12 6 2.7941 9.5856 -3.0752 13 1 1.8734 10.1286 -2.9212 14 6 3.7784 10.1089 -3.9023 15 7 5.0010 9.6232 -3.8591 16 14 3.3680 11.5024 -5.0765 17 1 1.9355 11.8657 -4.9322 18 1 4.2119 12.6823 -4.7586 19 1 3.6308 11.0675 -6.4719 20 6 2.2732 8.0299 -1.2164 21 6 1.4147 6.7954 -1.5041 22 6 2.0462 -0.7327 1.2443 23 6 1.3756 -2.1051 1.3176 24 7 1.5041 -2.8044 0.0452 25 6 1.7819 -2.2045 -1.1130 26 8 1.8232 -2.8847 -2.1163 27 6 2.0454 -0.7315 -1.2419 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.1562 1.9346 -1.7385 32 1 3.2974 3.6263 -1.0102 33 1 1.8454 4.1446 -0.1207 34 1 0.6106 4.3560 -2.2609 35 1 2.0628 3.8375 -3.1499 36 1 3.7757 5.2063 -3.4371 37 1 4.8463 7.3937 -2.4135 38 1 4.1490 7.6221 -4.0364 39 1 5.6888 9.9886 -4.4373 40 1 2.9897 7.8049 -0.4262 41 1 1.6363 8.8601 -0.9111 42 1 0.5479 7.0891 -2.0962 43 1 1.0752 6.3647 -0.5621 44 1 3.1268 -0.8570 1.1735 45 1 1.8021 -0.1557 2.1362 46 1 1.8483 -2.6956 2.1026 47 1 0.3191 -1.9778 1.5536 48 1 1.3796 -3.7664 0.0406 49 1 1.5355 -0.3480 -2.1257 50 1 3.1177 -0.5631 -1.3423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160478843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:31 Heat of formation + Delta-G solvation = -47.898841 kcal Electronic energy + Delta-G solvation = -28938.731693 eV Core-core repulsion = 24966.034004 eV Total energy + Delta-G solvation = -3972.697689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.44573 -39.67915 -37.97947 -37.04954 -35.50655 -34.43082 -33.48227 -31.39155 -30.22439 -29.83676 -28.82304 -28.28352 -25.69143 -24.90857 -23.60726 -22.81885 -22.31180 -21.02607 -20.52333 -18.88153 -18.05120 -17.61322 -17.00480 -16.79846 -16.29463 -15.82821 -15.62279 -15.59323 -15.16912 -14.96519 -14.52907 -14.27426 -13.98982 -13.87845 -13.66533 -13.53367 -13.29077 -13.14264 -12.65054 -12.63158 -12.28817 -12.20696 -12.02155 -11.95791 -11.61552 -11.51466 -11.43815 -11.37667 -11.02307 -10.91876 -10.74503 -10.60956 -10.28806 -10.26067 -9.84114 -9.79850 -9.57627 -9.53584 -9.22289 -8.65946 -7.93137 -6.72511 -5.78504 -3.17290 2.18697 2.35454 2.74300 2.79573 3.05547 3.37640 3.45162 3.47311 3.90275 4.01478 4.12321 4.22155 4.49860 4.51706 4.59360 4.76926 4.92325 5.02306 5.07737 5.08262 5.13743 5.23190 5.24998 5.31339 5.39764 5.42312 5.54720 5.55857 5.62480 5.68082 5.77557 5.98329 6.02083 6.13181 6.19763 6.27380 6.28045 6.39004 6.55215 6.78540 6.82241 6.90153 7.22672 7.24802 7.33311 7.40774 7.74574 7.75675 7.88142 7.96672 8.39473 9.20951 9.83816 10.42363 11.31885 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.001907 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.651239 B =14676.122142 C =15008.260490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C 0.522 3.478 4 O -0.533 6.533 5 N -0.726 5.726 6 C 0.123 3.877 7 C -0.092 4.092 8 C -0.143 4.143 9 C -0.146 4.146 10 C 0.196 3.804 11 N -0.596 5.596 12 C -0.244 4.244 13 H 0.069 0.931 14 C -0.003 4.003 15 N -0.909 5.909 16 Si 0.904 3.096 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.289 1.289 20 C 0.143 3.857 21 C -0.091 4.091 22 C -0.114 4.114 23 C 0.108 3.892 24 N -0.720 5.720 25 C 0.526 3.474 26 O -0.554 6.554 27 C -0.125 4.125 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.399 0.601 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.091 0.909 39 H 0.253 0.747 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.400 0.600 49 H 0.107 0.893 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 -24.360 9.899 28.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C 0.307 3.693 4 O -0.409 6.409 5 N -0.377 5.377 6 C 0.001 3.999 7 C -0.130 4.130 8 C -0.144 4.144 9 C -0.165 4.165 10 C 0.071 3.929 11 N -0.319 5.319 12 C -0.374 4.374 13 H 0.086 0.914 14 C -0.201 4.201 15 N -0.555 5.555 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.216 1.216 20 C 0.016 3.984 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.016 4.016 24 N -0.372 5.372 25 C 0.313 3.687 26 O -0.433 6.433 27 C -0.165 4.165 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.233 0.767 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.236 0.764 49 H 0.126 0.874 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.334 -24.057 9.941 27.653 hybrid contribution -0.380 0.198 -0.973 1.064 sum -9.715 -23.858 8.967 27.276 Atomic orbital electron populations 1.21984 0.91707 1.03339 1.03409 1.20930 0.97903 0.92889 0.96882 1.20232 0.80301 0.86696 0.82061 1.90738 1.37403 1.77067 1.35693 1.46123 1.53482 1.13065 1.25005 1.21478 0.99623 0.79687 0.99162 1.20912 1.00723 0.94708 0.96618 1.20213 0.98183 0.93173 1.02821 1.23131 0.96034 1.00403 0.96957 1.19708 0.90472 0.82281 1.00423 1.44141 1.48940 1.14982 1.23834 1.19223 0.98972 0.96284 1.22884 0.91357 1.24998 0.94717 0.98587 1.01765 1.70027 1.00552 1.44486 1.40387 0.86184 0.77714 0.81696 0.80970 1.20332 1.21770 1.21617 1.20950 0.93968 0.94190 0.89261 1.20755 0.98413 0.96047 0.97764 1.21759 1.01439 0.94108 0.97871 1.21485 1.01345 0.93637 0.85157 1.45490 1.72073 1.11856 1.07828 1.19933 0.75600 0.90381 0.82755 1.90794 1.52024 1.65072 1.35379 1.21763 1.04718 0.91374 0.98675 0.91535 0.91046 0.91112 0.76700 0.91177 0.91155 0.91458 0.91499 0.89062 0.94421 0.89137 0.93683 0.95886 0.92548 0.91962 0.92917 0.90069 0.88450 0.89967 0.90998 0.76409 0.87432 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 7.72 37.16 0.29 -0.45 16 2 C -0.08 -0.55 0.63 -155.45 -0.10 -0.65 16 3 C 0.52 5.23 6.47 -10.98 -0.07 5.16 16 4 O -0.53 -7.53 15.89 5.55 0.09 -7.44 16 5 N -0.73 -6.64 5.37 -60.30 -0.32 -6.96 16 6 C 0.12 1.46 5.66 -4.04 -0.02 1.44 16 7 C -0.09 -1.12 5.32 -27.88 -0.15 -1.27 16 8 C -0.14 -2.39 5.11 -100.99 -0.52 -2.91 16 9 C -0.15 -2.78 9.47 -35.78 -0.34 -3.12 16 10 C 0.20 4.71 5.23 -5.10 -0.03 4.68 16 11 N -0.60 -15.03 3.01 -173.67 -0.52 -15.55 16 12 C -0.24 -6.72 9.71 -15.06 -0.15 -6.86 16 13 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 14 C 0.00 -0.08 5.01 -17.43 -0.09 -0.17 16 15 N -0.91 -26.37 11.08 55.49 0.61 -25.76 16 16 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 C 0.14 2.99 6.58 -3.53 -0.02 2.97 16 21 C -0.09 -1.57 5.94 -28.18 -0.17 -1.73 16 22 C -0.11 -0.67 4.35 -26.59 -0.12 -0.79 16 23 C 0.11 0.40 6.38 -4.48 -0.03 0.37 16 24 N -0.72 -4.06 5.24 -61.37 -0.32 -4.38 16 25 C 0.53 4.53 7.15 -11.86 -0.08 4.44 16 26 O -0.55 -7.16 17.78 5.56 0.10 -7.06 16 27 C -0.13 -0.89 4.64 -28.09 -0.13 -1.02 16 28 H 0.07 0.30 7.58 -51.93 -0.39 -0.10 16 29 H 0.07 0.32 5.90 -51.93 -0.31 0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.40 2.62 7.63 -40.82 -0.31 2.31 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 36 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 41 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 45 H 0.10 0.60 7.89 -51.93 -0.41 0.19 16 46 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.07 0.18 6.86 -51.93 -0.36 -0.17 16 48 H 0.40 1.88 8.80 -40.82 -0.36 1.52 16 49 H 0.11 0.66 7.91 -51.93 -0.41 0.25 16 50 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -34.59 392.68 -9.49 -44.08 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.29 Total: 0.34 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -1.72 Total: 0.10 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.55 Total: -52.65 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.19 Total: -14.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.59 -9.49 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160478843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.822 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds