Wall clock time and date at job start Tue Mar 31 2020 19:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.67173 * 2 1 4 4 O 1.21283 * 119.99820 * 119.99603 * 3 2 1 5 5 N 1.34780 * 119.99963 * 299.99786 * 3 2 1 6 6 C 1.46497 * 119.99867 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47170 * 179.97438 * 6 5 3 8 8 C 1.50702 * 109.47265 * 180.02562 * 7 6 5 9 9 C 1.29454 * 117.68934 * 95.00474 * 8 7 6 10 10 C 1.50327 * 123.64523 * 180.57271 * 9 8 7 11 11 N 1.47007 * 109.16664 * 349.02286 * 10 9 8 12 12 C 1.36935 * 121.37293 * 222.96734 * 11 10 9 13 13 H 1.07999 * 120.00090 * 155.97114 * 12 11 10 14 14 C 1.38811 * 120.00342 * 335.97276 * 12 11 10 15 15 N 1.31620 * 119.99777 * 344.51356 * 14 12 11 16 16 Si 1.86794 * 120.00177 * 164.51071 * 14 12 11 17 17 H 1.48493 * 109.47247 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46936 * 120.00457 * 16 14 12 19 19 H 1.48504 * 109.47245 * 239.99989 * 16 14 12 20 20 C 1.47336 * 117.25239 * 42.94576 * 11 10 9 21 21 C 1.49971 * 117.69202 * 274.74195 * 8 7 6 22 22 C 1.53347 * 109.67193 * 120.49333 * 2 1 3 23 23 C 1.52925 * 108.67023 * 52.23810 * 22 2 1 24 24 N 1.45760 * 110.48764 * 50.75498 * 23 22 2 25 25 C 1.33357 * 124.10437 * 340.90121 * 24 23 22 26 26 O 1.21281 * 118.24724 * 182.26930 * 25 24 23 27 27 C 1.50198 * 123.51985 * 2.22593 * 25 24 23 28 28 H 1.09000 * 109.46545 * 60.00220 * 1 2 3 29 29 H 1.08993 * 109.47146 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47395 * 300.00189 * 1 2 3 31 31 H 0.96996 * 119.99711 * 359.97438 * 5 3 2 32 32 H 1.09001 * 109.47163 * 60.00077 * 6 5 3 33 33 H 1.08993 * 109.47575 * 299.99930 * 6 5 3 34 34 H 1.09001 * 109.46615 * 60.00231 * 7 6 5 35 35 H 1.08993 * 109.47214 * 300.00640 * 7 6 5 36 36 H 1.07998 * 118.17650 * 0.55053 * 9 8 7 37 37 H 1.09000 * 109.51773 * 108.92785 * 10 9 8 38 38 H 1.08998 * 109.51983 * 229.11665 * 10 9 8 39 39 H 0.96997 * 120.00263 * 179.97438 * 15 14 12 40 40 H 1.09009 * 109.77446 * 57.81019 * 20 11 10 41 41 H 1.08999 * 109.77915 * 178.56229 * 20 11 10 42 42 H 1.09004 * 109.31129 * 281.57081 * 21 8 7 43 43 H 1.08999 * 109.31625 * 41.00152 * 21 8 7 44 44 H 1.09001 * 109.60471 * 171.99315 * 22 2 1 45 45 H 1.09001 * 109.60608 * 292.32628 * 22 2 1 46 46 H 1.09004 * 109.29825 * 171.06415 * 23 22 2 47 47 H 1.08997 * 109.30796 * 290.44302 * 23 22 2 48 48 H 0.97001 * 117.94685 * 160.91908 * 24 23 22 49 49 H 1.09000 * 109.42180 * 222.31292 * 27 25 24 50 50 H 1.09006 * 109.38739 * 102.56399 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0373 1.4191 0.0000 4 8 2.7359 1.8133 0.9097 5 7 1.7147 2.2501 -1.0109 6 6 2.2074 3.6297 -1.0106 7 6 1.7006 4.3525 -2.2602 8 6 2.2079 5.7716 -2.2602 9 6 3.2949 6.0218 -2.9173 10 6 3.9254 7.3842 -2.9965 11 7 2.9905 8.3809 -2.4545 12 6 2.7941 9.5856 -3.0752 13 1 1.8734 10.1286 -2.9212 14 6 3.7784 10.1089 -3.9023 15 7 5.0010 9.6232 -3.8591 16 14 3.3680 11.5024 -5.0765 17 1 1.9355 11.8657 -4.9322 18 1 4.2119 12.6823 -4.7586 19 1 3.6308 11.0675 -6.4719 20 6 2.2732 8.0299 -1.2164 21 6 1.4147 6.7954 -1.5041 22 6 2.0462 -0.7327 1.2443 23 6 1.3756 -2.1051 1.3176 24 7 1.5041 -2.8044 0.0452 25 6 1.7819 -2.2045 -1.1130 26 8 1.8232 -2.8847 -2.1163 27 6 2.0454 -0.7315 -1.2419 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.1562 1.9346 -1.7385 32 1 3.2974 3.6263 -1.0102 33 1 1.8454 4.1446 -0.1207 34 1 0.6106 4.3560 -2.2609 35 1 2.0628 3.8375 -3.1499 36 1 3.7757 5.2063 -3.4371 37 1 4.8463 7.3937 -2.4135 38 1 4.1490 7.6221 -4.0364 39 1 5.6888 9.9886 -4.4373 40 1 2.9897 7.8049 -0.4262 41 1 1.6363 8.8601 -0.9111 42 1 0.5479 7.0891 -2.0962 43 1 1.0752 6.3647 -0.5621 44 1 3.1268 -0.8570 1.1735 45 1 1.8021 -0.1557 2.1362 46 1 1.8483 -2.6956 2.1026 47 1 0.3191 -1.9778 1.5536 48 1 1.3796 -3.7664 0.0406 49 1 1.5355 -0.3480 -2.1257 50 1 3.1177 -0.5631 -1.3423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160478843.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:30 Heat of formation + Delta-G solvation = -72.552928 kcal Electronic energy + Delta-G solvation = -28939.800774 eV Core-core repulsion = 24966.034004 eV Total energy + Delta-G solvation = -3973.766771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.07732 -40.47518 -39.47615 -37.76252 -36.71435 -35.29249 -34.71896 -33.09646 -31.49603 -30.79391 -30.11600 -28.82810 -27.21086 -25.66417 -24.76405 -24.21366 -23.41953 -22.45640 -21.37575 -19.48372 -19.38047 -18.70632 -17.78596 -17.46606 -17.38078 -17.01904 -16.81606 -16.42953 -16.33598 -15.82448 -15.59662 -15.52815 -15.28151 -15.06480 -14.89245 -14.52406 -14.39195 -14.14135 -13.84328 -13.62361 -13.36891 -13.19625 -13.03146 -12.84020 -12.81208 -12.76939 -12.60353 -12.46446 -12.34574 -12.12985 -12.01315 -11.90287 -11.85393 -11.66743 -11.39715 -11.19158 -10.69747 -10.58493 -10.10675 -10.07132 -9.47904 -8.75523 -7.88493 -5.30668 1.42365 1.46048 1.46999 1.52580 1.57980 1.59263 2.16005 2.30793 2.50549 3.28206 3.36507 3.45907 3.62375 3.67467 3.72143 3.96273 3.98100 4.12423 4.13538 4.17425 4.31132 4.37868 4.52828 4.56032 4.59577 4.60849 4.69576 4.70518 4.81562 4.87390 4.90963 4.92972 4.98878 4.99319 5.10459 5.13807 5.18815 5.24544 5.29238 5.41103 5.43418 5.50756 5.60918 5.81611 5.89047 6.28581 6.29133 6.33472 6.52516 7.12806 7.16711 7.21466 7.83084 8.37772 9.20209 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.029170 B = 0.001907 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.651239 B =14676.122142 C =15008.260490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.071 4.071 3 C 0.522 3.478 4 O -0.577 6.577 5 N -0.713 5.713 6 C 0.132 3.868 7 C -0.080 4.080 8 C -0.119 4.119 9 C -0.176 4.176 10 C 0.207 3.793 11 N -0.616 5.616 12 C -0.255 4.255 13 H 0.072 0.928 14 C -0.059 4.059 15 N -0.942 5.942 16 Si 0.971 3.029 17 H -0.265 1.265 18 H -0.293 1.293 19 H -0.290 1.290 20 C 0.135 3.865 21 C -0.087 4.087 22 C -0.116 4.116 23 C 0.111 3.889 24 N -0.709 5.709 25 C 0.526 3.474 26 O -0.604 6.604 27 C -0.123 4.123 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.001 0.999 38 H 0.054 0.946 39 H 0.249 0.751 40 H 0.017 0.983 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.407 0.593 49 H 0.119 0.881 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 -26.074 10.519 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C 0.308 3.692 4 O -0.456 6.456 5 N -0.365 5.365 6 C 0.008 3.992 7 C -0.117 4.117 8 C -0.119 4.119 9 C -0.196 4.196 10 C 0.081 3.919 11 N -0.340 5.340 12 C -0.385 4.385 13 H 0.090 0.910 14 C -0.253 4.253 15 N -0.589 5.589 16 Si 0.799 3.201 17 H -0.189 1.189 18 H -0.220 1.220 19 H -0.217 1.217 20 C 0.009 3.991 21 C -0.125 4.125 22 C -0.154 4.154 23 C -0.013 4.013 24 N -0.359 5.359 25 C 0.313 3.687 26 O -0.487 6.487 27 C -0.163 4.163 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.252 0.748 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.243 0.757 49 H 0.137 0.863 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.412 -25.799 10.598 30.528 hybrid contribution 0.540 0.738 -1.014 1.365 sum -11.873 -25.061 9.584 29.341 Atomic orbital electron populations 1.22014 0.89866 1.04219 1.04156 1.20870 0.99149 0.90404 0.97031 1.20793 0.79327 0.87797 0.81242 1.90725 1.39367 1.78093 1.37442 1.45948 1.53250 1.11936 1.25391 1.21172 0.98372 0.81085 0.98538 1.20815 1.02194 0.91380 0.97344 1.20585 0.96295 0.95617 0.99451 1.22816 0.98067 0.98143 1.00543 1.19342 0.89836 0.85098 0.97579 1.44439 1.49380 1.14780 1.25370 1.19577 0.98955 0.97088 1.22906 0.91028 1.25813 0.94622 1.01356 1.03553 1.70205 1.01440 1.46030 1.41222 0.85142 0.77949 0.78529 0.78461 1.18888 1.22018 1.21722 1.21161 0.94056 0.96262 0.87586 1.20715 0.97659 0.94442 0.99693 1.21770 1.00812 0.95345 0.97452 1.21648 1.02671 0.92424 0.84510 1.45491 1.70337 1.12368 1.07741 1.20107 0.75124 0.90650 0.82784 1.90775 1.54616 1.66076 1.37186 1.21744 1.04494 0.90684 0.99349 0.90531 0.90086 0.90712 0.74793 0.93350 0.91990 0.88715 0.89983 0.87022 0.98118 0.92790 0.94182 0.96503 0.92231 0.91281 0.89402 0.91561 0.88583 0.87722 0.88807 0.75677 0.86271 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 7.72 71.98 0.56 -0.42 16 2 C -0.07 -0.79 0.63 -52.79 -0.03 -0.82 16 3 C 0.52 9.54 6.47 87.66 0.57 10.10 16 4 O -0.58 -15.90 15.89 -3.04 -0.05 -15.95 16 5 N -0.71 -11.14 5.37 -463.06 -2.48 -13.62 16 6 C 0.13 2.83 5.66 86.38 0.49 3.31 16 7 C -0.08 -1.66 5.32 29.85 0.16 -1.50 16 8 C -0.12 -3.73 5.11 -15.14 -0.08 -3.81 16 9 C -0.18 -6.72 9.47 27.11 0.26 -6.46 16 10 C 0.21 10.40 5.23 85.42 0.45 10.84 16 11 N -0.62 -31.79 3.01 -703.38 -2.12 -33.91 16 12 C -0.26 -14.29 9.71 84.03 0.82 -13.48 16 13 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 14 C -0.06 -3.36 5.01 84.86 0.43 -2.93 16 15 N -0.94 -57.01 11.08 21.65 0.24 -56.77 16 16 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 C 0.13 5.60 6.58 86.25 0.57 6.17 16 21 C -0.09 -2.77 5.94 29.65 0.18 -2.60 16 22 C -0.12 -1.15 4.35 30.69 0.13 -1.01 16 23 C 0.11 0.48 6.38 86.49 0.55 1.03 16 24 N -0.71 -6.40 5.24 -467.26 -2.45 -8.85 16 25 C 0.53 8.28 7.15 87.72 0.63 8.90 16 26 O -0.60 -15.24 17.78 -3.03 -0.05 -15.30 16 27 C -0.12 -1.53 4.64 29.71 0.14 -1.39 16 28 H 0.08 0.38 7.58 -2.39 -0.02 0.37 16 29 H 0.08 0.43 5.90 -2.39 -0.01 0.41 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.41 3.91 7.63 -92.71 -0.71 3.20 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.46 8.11 -2.39 -0.02 1.44 16 34 H 0.09 1.56 8.11 -2.39 -0.02 1.54 16 35 H 0.08 1.55 7.78 -2.39 -0.02 1.53 16 36 H 0.11 3.73 7.73 -2.91 -0.02 3.70 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.05 3.05 6.41 -2.39 -0.02 3.03 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 42 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 44 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 45 H 0.10 1.02 7.89 -2.39 -0.02 1.00 16 46 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 47 H 0.09 0.10 6.86 -2.39 -0.02 0.08 16 48 H 0.41 2.95 8.80 -92.71 -0.82 2.14 16 49 H 0.12 1.19 7.91 -2.39 -0.02 1.17 16 50 H 0.10 1.41 8.09 -2.38 -0.02 1.39 16 Total: -1.00 -79.32 392.68 0.34 -78.98 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -0.57 Total: 11.91 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.80 Total: 5.94 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -6.81 Total: -113.15 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.10 Total: -31.25 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -79.32 0.34 -78.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160478843.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.428 kcal (2) G-P(sol) polarization free energy of solvation -79.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds