Wall clock time and date at job start Tue Mar 31 2020 19:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.60630 * 2 1 4 4 O 1.21287 * 120.00170 * 118.26379 * 3 2 1 5 5 N 1.34770 * 119.99949 * 298.26714 * 3 2 1 6 6 C 1.46503 * 120.00306 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47324 * 180.02562 * 6 5 3 8 8 C 1.50707 * 109.47209 * 180.02562 * 7 6 5 9 9 C 1.29447 * 117.69780 * 94.99677 * 8 7 6 10 10 C 1.50323 * 123.65290 * 180.85846 * 9 8 7 11 11 N 1.46999 * 109.16562 * 349.02539 * 10 9 8 12 12 C 1.36937 * 121.37495 * 222.96520 * 11 10 9 13 13 H 1.08009 * 119.99844 * 151.87230 * 12 11 10 14 14 C 1.38810 * 120.00395 * 331.87297 * 12 11 10 15 15 N 1.31616 * 119.99615 * 348.37656 * 14 12 11 16 16 Si 1.86795 * 120.00390 * 168.37371 * 14 12 11 17 17 H 1.48499 * 109.47186 * 59.99908 * 16 14 12 18 18 H 1.48501 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47226 * 300.00007 * 16 14 12 20 20 C 1.47340 * 117.25108 * 42.94427 * 11 10 9 21 21 C 1.49971 * 117.69201 * 274.74250 * 8 7 6 22 22 C 1.53347 * 109.60360 * 239.66958 * 2 1 3 23 23 C 1.53069 * 108.42402 * 172.71487 * 22 2 1 24 24 C 1.50172 * 109.82408 * 48.95033 * 23 22 2 25 25 O 1.21277 * 118.24796 * 162.37188 * 24 23 22 26 26 N 1.33245 * 123.59239 * 342.27712 * 24 23 22 27 27 C 1.45752 * 124.06846 * 2.38950 * 26 24 23 28 28 H 1.09002 * 109.47604 * 180.32199 * 1 2 3 29 29 H 1.09003 * 109.46818 * 300.32663 * 1 2 3 30 30 H 1.09005 * 109.47183 * 60.32288 * 1 2 3 31 31 H 0.96999 * 120.00212 * 0.02562 * 5 3 2 32 32 H 1.08997 * 109.47482 * 300.00429 * 6 5 3 33 33 H 1.09005 * 109.46504 * 59.99830 * 6 5 3 34 34 H 1.09006 * 109.47397 * 299.99773 * 7 6 5 35 35 H 1.08997 * 109.47574 * 60.00087 * 7 6 5 36 36 H 1.08001 * 118.17304 * 0.83777 * 9 8 7 37 37 H 1.09001 * 109.52094 * 108.93534 * 10 9 8 38 38 H 1.08997 * 109.52506 * 229.11627 * 10 9 8 39 39 H 0.97006 * 120.00391 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.77275 * 57.81437 * 20 11 10 41 41 H 1.09002 * 109.78315 * 178.56198 * 20 11 10 42 42 H 1.09004 * 109.31145 * 281.28522 * 21 8 7 43 43 H 1.09001 * 109.31770 * 40.71299 * 21 8 7 44 44 H 1.09006 * 109.67136 * 52.98881 * 22 2 1 45 45 H 1.08993 * 109.67904 * 292.44970 * 22 2 1 46 46 H 1.09004 * 109.39880 * 169.03312 * 23 22 2 47 47 H 1.09007 * 109.40061 * 288.86007 * 23 22 2 48 48 H 0.97001 * 117.97709 * 182.30221 * 26 24 23 49 49 H 1.09002 * 109.29413 * 220.52716 * 27 26 24 50 50 H 1.09001 * 109.13364 * 101.05152 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.7077 1.8240 0.9251 5 7 1.7410 2.2398 -1.0280 6 6 2.2321 3.6201 -1.0278 7 6 1.7593 4.3298 -2.2980 8 6 2.2650 5.7495 -2.2980 9 6 3.3695 5.9948 -2.9271 10 6 4.0037 7.3559 -2.9971 11 7 3.0561 8.3567 -2.4861 12 6 2.8780 9.5582 -3.1185 13 1 1.9304 10.0713 -3.0460 14 6 3.9153 10.1166 -3.8527 15 7 5.1302 9.6192 -3.7585 16 14 3.5869 11.5738 -4.9743 17 1 3.0642 12.7085 -4.1715 18 1 4.8500 11.9793 -5.6417 19 1 2.5852 11.1916 -6.0020 20 6 2.3054 8.0136 -1.2655 21 6 1.4501 6.7797 -1.5742 22 6 2.0444 -0.7295 -1.2469 23 6 3.5638 -0.5566 -1.3160 24 6 4.1752 -0.8883 0.0149 25 8 5.3647 -1.1206 0.0581 26 7 3.4827 -0.9396 1.1521 27 6 2.0429 -0.7310 1.2414 28 1 -0.3634 -1.0276 0.0058 29 1 -0.3633 0.5189 0.8871 30 1 -0.3634 0.5088 -0.8929 31 1 1.2032 1.9166 -1.7677 32 1 1.8446 4.1436 -0.1538 33 1 3.3217 3.6180 -0.9964 34 1 2.1466 3.8066 -3.1723 35 1 0.6698 4.3319 -2.3289 36 1 3.8629 5.1758 -3.4293 37 1 4.9088 7.3676 -2.3898 38 1 4.2554 7.5876 -4.0320 39 1 5.8553 10.0096 -4.2713 40 1 3.0002 7.7923 -0.4553 41 1 1.6617 8.8463 -0.9820 42 1 0.6025 7.0702 -2.1950 43 1 1.0809 6.3562 -0.6401 44 1 1.5855 -0.3013 -2.1381 45 1 1.7984 -1.7892 -1.1798 46 1 3.9697 -1.2231 -2.0771 47 1 3.7993 0.4755 -1.5757 48 1 3.9664 -1.1288 1.9713 49 1 1.8194 -0.1368 2.1275 50 1 1.5461 -1.6979 1.3213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160979299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:37 Heat of formation + Delta-G solvation = -49.108315 kcal Electronic energy + Delta-G solvation = -29427.207947 eV Core-core repulsion = 25454.457811 eV Total energy + Delta-G solvation = -3972.750136 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.45931 -39.39111 -37.96543 -36.79033 -35.52833 -34.11340 -33.30334 -31.83340 -31.32885 -29.85417 -28.71581 -26.74160 -25.59117 -24.73658 -23.80968 -22.85817 -22.37709 -21.09420 -20.92095 -19.20161 -17.61325 -17.51114 -16.83296 -16.51891 -16.24403 -16.09777 -15.60636 -15.37726 -15.03227 -14.60186 -14.44007 -14.20122 -14.01822 -13.76968 -13.61259 -13.46022 -13.26368 -13.08261 -12.91042 -12.67871 -12.62490 -12.22498 -12.02941 -11.87318 -11.71819 -11.57437 -11.42966 -11.31960 -11.02742 -10.87748 -10.74177 -10.34865 -10.28030 -10.02457 -9.95755 -9.83079 -9.54460 -9.33974 -9.21519 -8.64620 -7.94011 -6.65987 -5.78019 -3.21495 2.36511 2.44660 2.73589 3.02022 3.06520 3.38678 3.43935 3.44848 3.86058 3.99062 4.12834 4.28400 4.49245 4.49644 4.76100 4.84165 5.01125 5.06223 5.06660 5.09266 5.11345 5.21945 5.24626 5.32201 5.37885 5.41500 5.50131 5.53556 5.55324 5.62754 5.77252 5.97704 6.01779 6.13503 6.19558 6.27566 6.38975 6.50704 6.56072 6.79739 6.91656 7.06925 7.22719 7.24206 7.33375 7.41102 7.76139 7.87768 7.97620 7.98800 8.42642 9.22013 9.83547 10.44467 11.32234 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.002174 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.668799 B =12877.124673 C =13399.581956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.100 4.100 3 C 0.518 3.482 4 O -0.528 6.528 5 N -0.726 5.726 6 C 0.124 3.876 7 C -0.090 4.090 8 C -0.144 4.144 9 C -0.145 4.145 10 C 0.198 3.802 11 N -0.595 5.595 12 C -0.249 4.249 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.909 5.909 16 Si 0.906 3.094 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.143 3.857 21 C -0.090 4.090 22 C -0.111 4.111 23 C -0.143 4.143 24 C 0.522 3.478 25 O -0.559 6.559 26 N -0.709 5.709 27 C 0.134 3.866 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.087 0.913 39 H 0.255 0.745 40 H 0.023 0.977 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.402 0.598 49 H 0.087 0.913 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 -24.477 5.791 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 C 0.302 3.698 4 O -0.403 6.403 5 N -0.378 5.378 6 C 0.001 3.999 7 C -0.128 4.128 8 C -0.145 4.145 9 C -0.165 4.165 10 C 0.073 3.927 11 N -0.318 5.318 12 C -0.378 4.378 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.554 5.554 16 Si 0.736 3.264 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.016 3.984 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.182 4.182 24 C 0.309 3.691 25 O -0.438 6.438 26 N -0.360 5.360 27 C 0.009 3.991 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.237 0.763 49 H 0.105 0.895 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.611 -24.143 6.183 27.494 hybrid contribution -0.260 0.582 -0.703 0.949 sum -11.870 -23.561 5.480 26.945 Atomic orbital electron populations 1.21788 0.90765 1.03542 1.03501 1.21231 0.98361 0.93196 0.97598 1.20261 0.80224 0.86861 0.82406 1.90764 1.37933 1.76457 1.35177 1.46088 1.55143 1.13210 1.23330 1.21466 0.99670 0.79748 0.99038 1.20900 1.00786 0.94779 0.96361 1.20217 0.97964 0.93150 1.03143 1.23140 0.95912 1.00453 0.96975 1.19668 0.90464 0.82246 1.00312 1.44074 1.47286 1.15108 1.25341 1.19105 0.95857 0.96612 1.26255 0.91662 1.25111 0.94794 0.98240 1.01527 1.69977 0.99222 1.43090 1.43087 0.86318 0.76884 0.82492 0.80727 1.20883 1.21603 1.21060 1.20996 0.93717 0.94160 0.89501 1.20785 0.98194 0.96059 0.97908 1.21785 0.94732 1.01676 0.96705 1.21723 0.95803 1.05204 0.95509 1.19999 0.86821 0.76044 0.86253 1.90767 1.15782 1.50118 1.87123 1.45225 1.08922 1.71873 1.10030 1.21229 0.80633 0.99528 0.97701 0.90766 0.91323 0.91206 0.76775 0.91211 0.91293 0.91564 0.91478 0.89115 0.94323 0.89533 0.93526 0.95860 0.92572 0.91964 0.93001 0.89716 0.89623 0.87510 0.88095 0.76274 0.89495 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 8.39 37.16 0.31 -0.16 16 2 C -0.10 -0.60 0.63 -155.53 -0.10 -0.70 16 3 C 0.52 5.19 4.73 -10.99 -0.05 5.14 16 4 O -0.53 -7.73 15.53 5.55 0.09 -7.64 16 5 N -0.73 -6.43 5.36 -60.30 -0.32 -6.76 16 6 C 0.12 1.48 5.66 -4.04 -0.02 1.46 16 7 C -0.09 -1.09 5.32 -27.88 -0.15 -1.24 16 8 C -0.14 -2.42 5.11 -100.98 -0.52 -2.93 16 9 C -0.15 -2.78 9.47 -35.78 -0.34 -3.12 16 10 C 0.20 4.79 5.17 -5.10 -0.03 4.76 16 11 N -0.59 -15.11 2.99 -173.57 -0.52 -15.63 16 12 C -0.25 -6.87 9.68 -15.06 -0.15 -7.02 16 13 H 0.07 1.76 7.86 -52.48 -0.41 1.35 16 14 C 0.00 0.05 5.07 -17.43 -0.09 -0.04 16 15 N -0.91 -26.50 11.15 55.49 0.62 -25.88 16 16 Si 0.91 21.76 29.57 -169.99 -5.03 16.73 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.14 3.02 6.59 -3.44 -0.02 3.00 16 21 C -0.09 -1.57 5.95 -28.09 -0.17 -1.74 16 22 C -0.11 -0.54 4.79 -26.52 -0.13 -0.67 16 23 C -0.14 -1.19 5.51 -28.10 -0.15 -1.35 16 24 C 0.52 6.14 7.43 -11.92 -0.09 6.05 16 25 O -0.56 -9.12 17.78 5.56 0.10 -9.02 16 26 N -0.71 -6.52 5.03 -61.42 -0.31 -6.83 16 27 C 0.13 0.84 5.40 -4.48 -0.02 0.82 16 28 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.19 7.69 -51.93 -0.40 -0.21 16 31 H 0.40 2.33 7.53 -40.82 -0.31 2.02 16 32 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 35 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 36 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.09 2.31 6.60 -51.93 -0.34 1.97 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.08 0.26 7.73 -51.93 -0.40 -0.14 16 45 H 0.09 0.29 8.13 -51.93 -0.42 -0.13 16 46 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 0.98 7.43 -51.93 -0.39 0.59 16 48 H 0.40 3.52 8.80 -40.82 -0.36 3.16 16 49 H 0.09 0.59 7.79 -51.93 -0.40 0.19 16 50 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 LS Contribution 394.42 15.07 5.94 5.94 Total: -1.00 -35.82 394.42 -9.58 -45.40 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.44 Total: 1.42 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.71 Total: 2.26 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.53 Total: -55.10 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.19 Total: -16.66 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.82 -9.58 -45.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160979299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.708 kcal (2) G-P(sol) polarization free energy of solvation -35.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds