Wall clock time and date at job start Tue Mar 31 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50695 * 109.60630 * 2 1 4 4 O 1.21287 * 120.00170 * 118.26379 * 3 2 1 5 5 N 1.34770 * 119.99949 * 298.26714 * 3 2 1 6 6 C 1.46503 * 120.00306 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47324 * 180.02562 * 6 5 3 8 8 C 1.50707 * 109.47209 * 180.02562 * 7 6 5 9 9 C 1.29447 * 117.69780 * 94.99677 * 8 7 6 10 10 C 1.50323 * 123.65290 * 180.85846 * 9 8 7 11 11 N 1.46999 * 109.16562 * 349.02539 * 10 9 8 12 12 C 1.36937 * 121.37495 * 222.96520 * 11 10 9 13 13 H 1.08009 * 119.99844 * 151.87230 * 12 11 10 14 14 C 1.38810 * 120.00395 * 331.87297 * 12 11 10 15 15 N 1.31616 * 119.99615 * 348.37656 * 14 12 11 16 16 Si 1.86795 * 120.00390 * 168.37371 * 14 12 11 17 17 H 1.48499 * 109.47186 * 59.99908 * 16 14 12 18 18 H 1.48501 * 109.47326 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47226 * 300.00007 * 16 14 12 20 20 C 1.47340 * 117.25108 * 42.94427 * 11 10 9 21 21 C 1.49971 * 117.69201 * 274.74250 * 8 7 6 22 22 C 1.53347 * 109.60360 * 239.66958 * 2 1 3 23 23 C 1.53069 * 108.42402 * 172.71487 * 22 2 1 24 24 C 1.50172 * 109.82408 * 48.95033 * 23 22 2 25 25 O 1.21277 * 118.24796 * 162.37188 * 24 23 22 26 26 N 1.33245 * 123.59239 * 342.27712 * 24 23 22 27 27 C 1.45752 * 124.06846 * 2.38950 * 26 24 23 28 28 H 1.09002 * 109.47604 * 180.32199 * 1 2 3 29 29 H 1.09003 * 109.46818 * 300.32663 * 1 2 3 30 30 H 1.09005 * 109.47183 * 60.32288 * 1 2 3 31 31 H 0.96999 * 120.00212 * 0.02562 * 5 3 2 32 32 H 1.08997 * 109.47482 * 300.00429 * 6 5 3 33 33 H 1.09005 * 109.46504 * 59.99830 * 6 5 3 34 34 H 1.09006 * 109.47397 * 299.99773 * 7 6 5 35 35 H 1.08997 * 109.47574 * 60.00087 * 7 6 5 36 36 H 1.08001 * 118.17304 * 0.83777 * 9 8 7 37 37 H 1.09001 * 109.52094 * 108.93534 * 10 9 8 38 38 H 1.08997 * 109.52506 * 229.11627 * 10 9 8 39 39 H 0.97006 * 120.00391 * 180.02562 * 15 14 12 40 40 H 1.09005 * 109.77275 * 57.81437 * 20 11 10 41 41 H 1.09002 * 109.78315 * 178.56198 * 20 11 10 42 42 H 1.09004 * 109.31145 * 281.28522 * 21 8 7 43 43 H 1.09001 * 109.31770 * 40.71299 * 21 8 7 44 44 H 1.09006 * 109.67136 * 52.98881 * 22 2 1 45 45 H 1.08993 * 109.67904 * 292.44970 * 22 2 1 46 46 H 1.09004 * 109.39880 * 169.03312 * 23 22 2 47 47 H 1.09007 * 109.40061 * 288.86007 * 23 22 2 48 48 H 0.97001 * 117.97709 * 182.30221 * 26 24 23 49 49 H 1.09002 * 109.29413 * 220.52716 * 27 26 24 50 50 H 1.09001 * 109.13364 * 101.05152 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0356 1.4196 0.0000 4 8 2.7077 1.8240 0.9251 5 7 1.7410 2.2398 -1.0280 6 6 2.2321 3.6201 -1.0278 7 6 1.7593 4.3298 -2.2980 8 6 2.2650 5.7495 -2.2980 9 6 3.3695 5.9948 -2.9271 10 6 4.0037 7.3559 -2.9971 11 7 3.0561 8.3567 -2.4861 12 6 2.8780 9.5582 -3.1185 13 1 1.9304 10.0713 -3.0460 14 6 3.9153 10.1166 -3.8527 15 7 5.1302 9.6192 -3.7585 16 14 3.5869 11.5738 -4.9743 17 1 3.0642 12.7085 -4.1715 18 1 4.8500 11.9793 -5.6417 19 1 2.5852 11.1916 -6.0020 20 6 2.3054 8.0136 -1.2655 21 6 1.4501 6.7797 -1.5742 22 6 2.0444 -0.7295 -1.2469 23 6 3.5638 -0.5566 -1.3160 24 6 4.1752 -0.8883 0.0149 25 8 5.3647 -1.1206 0.0581 26 7 3.4827 -0.9396 1.1521 27 6 2.0429 -0.7310 1.2414 28 1 -0.3634 -1.0276 0.0058 29 1 -0.3633 0.5189 0.8871 30 1 -0.3634 0.5088 -0.8929 31 1 1.2032 1.9166 -1.7677 32 1 1.8446 4.1436 -0.1538 33 1 3.3217 3.6180 -0.9964 34 1 2.1466 3.8066 -3.1723 35 1 0.6698 4.3319 -2.3289 36 1 3.8629 5.1758 -3.4293 37 1 4.9088 7.3676 -2.3898 38 1 4.2554 7.5876 -4.0320 39 1 5.8553 10.0096 -4.2713 40 1 3.0002 7.7923 -0.4553 41 1 1.6617 8.8463 -0.9820 42 1 0.6025 7.0702 -2.1950 43 1 1.0809 6.3562 -0.6401 44 1 1.5855 -0.3013 -2.1381 45 1 1.7984 -1.7892 -1.1798 46 1 3.9697 -1.2231 -2.0771 47 1 3.7993 0.4755 -1.5757 48 1 3.9664 -1.1288 1.9713 49 1 1.8194 -0.1368 2.1275 50 1 1.5461 -1.6979 1.3213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160979299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:36 Heat of formation + Delta-G solvation = -75.672000 kcal Electronic energy + Delta-G solvation = -29428.359834 eV Core-core repulsion = 25454.457811 eV Total energy + Delta-G solvation = -3973.902024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.15347 -40.29710 -39.47213 -37.60654 -36.70081 -35.28875 -34.39150 -33.06217 -32.36971 -31.49891 -30.13883 -27.28876 -27.12338 -25.33021 -24.95749 -24.32625 -23.53810 -22.48694 -21.83431 -19.97055 -19.44686 -18.26992 -17.73103 -17.39740 -17.21600 -17.03736 -16.82724 -16.77352 -16.20725 -15.78744 -15.52012 -15.33424 -15.15675 -14.97941 -14.83102 -14.42602 -14.34886 -14.06102 -13.82258 -13.49536 -13.42442 -13.36849 -13.20410 -13.10526 -12.85699 -12.74671 -12.60210 -12.40796 -12.35141 -12.22650 -12.18990 -11.89531 -11.76507 -11.69393 -11.23436 -10.87515 -10.73144 -10.69337 -10.12449 -10.05418 -9.49723 -8.70885 -7.89090 -5.36546 1.41205 1.45696 1.48498 1.55304 1.58041 1.62907 2.18499 2.35563 2.49770 3.28307 3.38800 3.47789 3.62958 3.67256 3.72247 3.94149 3.97059 4.12517 4.15356 4.28419 4.34643 4.37635 4.54583 4.58342 4.60750 4.68309 4.70385 4.74558 4.86059 4.86344 4.90898 4.95761 4.97902 5.00937 5.07194 5.14657 5.17938 5.23064 5.36998 5.39133 5.44055 5.49317 5.59733 5.76678 5.87650 6.28088 6.32201 6.34282 6.56769 7.12451 7.16253 7.27055 7.81289 8.38304 9.19190 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022877 B = 0.002174 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.668799 B =12877.124673 C =13399.581956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 C 0.512 3.488 4 O -0.583 6.583 5 N -0.711 5.711 6 C 0.133 3.867 7 C -0.077 4.077 8 C -0.120 4.120 9 C -0.177 4.177 10 C 0.209 3.791 11 N -0.615 5.615 12 C -0.261 4.261 13 H 0.071 0.929 14 C -0.055 4.055 15 N -0.943 5.943 16 Si 0.974 3.026 17 H -0.274 1.274 18 H -0.295 1.295 19 H -0.275 1.275 20 C 0.135 3.865 21 C -0.086 4.086 22 C -0.103 4.103 23 C -0.142 4.142 24 C 0.509 3.491 25 O -0.621 6.621 26 N -0.705 5.705 27 C 0.125 3.875 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.418 0.582 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.112 0.888 37 H -0.001 1.001 38 H 0.051 0.949 39 H 0.250 0.750 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.084 0.916 48 H 0.399 0.601 49 H 0.079 0.921 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.085 -26.711 4.998 32.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.095 4.095 3 C 0.299 3.701 4 O -0.462 6.462 5 N -0.363 5.363 6 C 0.009 3.991 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.197 4.197 10 C 0.084 3.916 11 N -0.339 5.339 12 C -0.391 4.391 13 H 0.088 0.912 14 C -0.250 4.250 15 N -0.589 5.589 16 Si 0.801 3.199 17 H -0.200 1.200 18 H -0.221 1.221 19 H -0.201 1.201 20 C 0.009 3.991 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.182 4.182 24 C 0.298 3.702 25 O -0.504 6.504 26 N -0.353 5.353 27 C 0.002 3.998 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.256 0.744 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.016 0.984 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.102 0.898 48 H 0.234 0.766 49 H 0.097 0.903 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.037 -26.400 5.392 31.357 hybrid contribution 1.038 1.291 -0.300 1.683 sum -15.000 -25.109 5.092 29.688 Atomic orbital electron populations 1.21838 0.87908 1.05523 1.03922 1.21273 1.00307 0.89945 0.98002 1.21104 0.79086 0.88458 0.81454 1.90750 1.40357 1.77777 1.37298 1.45862 1.54829 1.11805 1.23850 1.21105 0.97949 0.81550 0.98466 1.20801 1.02480 0.91216 0.96947 1.20618 0.96120 0.95778 0.99532 1.22818 0.97932 0.98142 1.00769 1.19286 0.89767 0.85155 0.97383 1.44374 1.47744 1.14990 1.26789 1.19490 0.96017 0.97411 1.26216 0.91180 1.25949 0.94569 1.01200 1.03272 1.70175 1.00037 1.44582 1.44094 0.85246 0.76514 0.79298 0.78807 1.19964 1.22097 1.20089 1.21197 0.93710 0.96345 0.87828 1.20740 0.97530 0.94369 0.99805 1.21884 0.91597 1.03451 0.97118 1.21752 0.98660 1.04218 0.93538 1.20716 0.86299 0.75274 0.87952 1.90727 1.18398 1.53149 1.88157 1.45362 1.10391 1.70202 1.09385 1.21580 0.78845 1.01532 0.97876 0.88020 0.92088 0.89711 0.74450 0.92448 0.94254 0.89734 0.88364 0.87059 0.98365 0.93120 0.94128 0.96844 0.92254 0.91033 0.89594 0.86784 0.86918 0.86518 0.89788 0.76601 0.90260 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.23 8.39 71.98 0.60 0.38 16 2 C -0.09 -0.77 0.63 -52.84 -0.03 -0.80 16 3 C 0.51 9.23 4.73 87.66 0.41 9.65 16 4 O -0.58 -17.03 15.53 -3.05 -0.05 -17.08 16 5 N -0.71 -10.40 5.36 -463.07 -2.48 -12.88 16 6 C 0.13 2.92 5.66 86.38 0.49 3.41 16 7 C -0.08 -1.56 5.32 29.85 0.16 -1.40 16 8 C -0.12 -3.79 5.11 -15.13 -0.08 -3.87 16 9 C -0.18 -6.84 9.47 27.11 0.26 -6.59 16 10 C 0.21 10.68 5.17 85.42 0.44 11.12 16 11 N -0.61 -32.15 2.99 -703.05 -2.10 -34.25 16 12 C -0.26 -14.73 9.68 84.03 0.81 -13.92 16 13 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 14 C -0.06 -3.15 5.07 84.86 0.43 -2.72 16 15 N -0.94 -57.56 11.15 21.65 0.24 -57.32 16 16 Si 0.97 45.55 29.57 68.60 2.03 47.58 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 C 0.13 5.71 6.59 86.31 0.57 6.28 16 21 C -0.09 -2.78 5.95 29.71 0.18 -2.61 16 22 C -0.10 -0.55 4.79 30.73 0.15 -0.40 16 23 C -0.14 -2.15 5.51 29.71 0.16 -1.98 16 24 C 0.51 12.01 7.43 87.73 0.65 12.66 16 25 O -0.62 -21.31 17.78 -3.02 -0.05 -21.36 16 26 N -0.71 -12.58 5.03 -467.47 -2.35 -14.93 16 27 C 0.13 1.26 5.40 86.49 0.47 1.73 16 28 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.08 -0.06 7.69 -2.38 -0.02 -0.08 16 31 H 0.42 2.83 7.53 -92.71 -0.70 2.13 16 32 H 0.06 1.42 8.11 -2.39 -0.02 1.40 16 33 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.51 7.78 -2.38 -0.02 1.49 16 35 H 0.10 1.51 8.11 -2.39 -0.02 1.49 16 36 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 37 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.05 2.88 6.60 -2.39 -0.02 2.87 16 39 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 40 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 42 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 44 H 0.11 0.01 7.73 -2.38 -0.02 -0.01 16 45 H 0.11 0.11 8.13 -2.39 -0.02 0.10 16 46 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.08 1.57 7.43 -2.38 -0.02 1.55 16 48 H 0.40 7.21 8.80 -92.71 -0.82 6.39 16 49 H 0.08 0.96 7.79 -2.39 -0.02 0.94 16 50 H 0.11 0.32 8.12 -2.39 -0.02 0.30 16 Total: -1.00 -86.17 394.42 0.34 -85.83 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -0.57 Total: 13.48 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 5.67 Total: 10.93 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -6.70 Total: -119.38 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.10 Total: -38.44 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -86.17 0.34 -85.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160979299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -86.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds