Wall clock time and date at job start Tue Mar 31 2020 19:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35918 * 116.99985 * 2 1 4 4 C 1.38855 * 120.40629 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99571 * 180.27764 * 4 3 2 6 6 C 1.31679 * 121.94697 * 359.47334 * 5 4 3 7 7 C 1.39528 * 120.68937 * 0.52515 * 6 5 4 8 8 C 1.47856 * 120.52990 * 179.76632 * 7 6 5 9 9 O 1.21547 * 119.99502 * 186.07302 * 8 7 6 10 10 N 1.34777 * 119.99957 * 6.07803 * 8 7 6 11 11 C 1.46498 * 119.99595 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47749 * 34.99801 * 11 10 8 13 13 C 1.53004 * 109.46830 * 274.99245 * 11 10 8 14 14 C 1.53006 * 109.46844 * 154.99805 * 11 10 8 15 15 C 1.52995 * 109.47265 * 294.99331 * 14 11 10 16 16 C 1.52997 * 109.47389 * 180.02562 * 15 14 11 17 17 C 1.52999 * 109.47273 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47135 * 180.02562 * 17 16 15 19 19 C 1.36931 * 120.00154 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99662 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00353 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00135 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99939 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46824 * 90.00143 * 23 21 19 25 25 H 1.48502 * 109.47431 * 210.00547 * 23 21 19 26 26 H 1.48500 * 109.46966 * 330.00606 * 23 21 19 27 27 C 1.38853 * 120.40886 * 180.02562 * 3 2 1 28 28 C 1.50701 * 120.87173 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47045 * 299.99934 * 1 2 3 31 31 H 1.08997 * 109.47144 * 60.00164 * 1 2 3 32 32 H 1.07998 * 119.49874 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.65343 * 180.24860 * 6 5 4 34 34 H 0.97003 * 119.99989 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46972 * 179.97438 * 13 11 10 36 36 H 1.08995 * 109.47408 * 300.00764 * 13 11 10 37 37 H 1.08997 * 109.46788 * 60.00581 * 13 11 10 38 38 H 1.09003 * 109.47115 * 54.99825 * 14 11 10 39 39 H 1.09002 * 109.46734 * 174.99831 * 14 11 10 40 40 H 1.08998 * 109.47051 * 300.00469 * 15 14 11 41 41 H 1.09003 * 109.46817 * 60.00013 * 15 14 11 42 42 H 1.09003 * 109.46939 * 300.00463 * 16 15 14 43 43 H 1.09003 * 109.47243 * 60.00135 * 16 15 14 44 44 H 1.08998 * 109.46831 * 300.00125 * 17 16 15 45 45 H 1.09002 * 109.47171 * 60.00290 * 17 16 15 46 46 H 0.97003 * 119.99725 * 359.97438 * 18 17 16 47 47 H 0.97001 * 119.99737 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.46969 * 96.35113 * 28 27 3 49 49 H 1.09003 * 109.46567 * 216.34043 * 28 27 3 50 50 H 1.08993 * 109.47878 * 336.34223 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5620 -0.0049 6 6 3.1953 3.6891 -0.0008 7 6 4.0199 2.5636 -0.0014 8 6 5.4911 2.7104 -0.0020 9 8 6.1997 1.7292 -0.1139 10 7 6.0465 3.9322 0.1216 11 6 7.5043 4.0776 0.1204 12 1 7.9422 3.3432 -0.5554 13 6 8.0404 3.8520 1.5356 14 6 7.8758 5.4863 -0.3472 15 6 7.4499 5.6686 -1.8053 16 6 7.8220 7.0770 -2.2730 17 6 7.3954 7.2595 -3.7310 18 7 7.7523 8.6079 -4.1791 19 6 7.4668 9.0021 -5.4590 20 1 6.9788 8.3187 -6.1382 21 6 7.8054 10.2794 -5.8837 22 7 7.5304 10.6585 -7.1138 23 14 8.6500 11.4611 -4.7091 24 1 10.1223 11.3025 -4.8211 25 1 8.2745 12.8557 -5.0547 26 1 8.2247 11.1643 -3.3176 27 6 3.4321 1.2936 -0.0005 28 6 4.2810 0.0484 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2197 2.3226 0.0005 33 1 3.6365 4.6749 -0.0015 34 1 5.4810 4.7153 0.2106 35 1 9.1250 3.9598 1.5347 36 1 7.6024 4.5865 2.2115 37 1 7.7756 2.8485 1.8687 38 1 7.3661 6.2219 0.2751 39 1 8.9539 5.6242 -0.2637 40 1 7.9596 4.9330 -2.4274 41 1 6.3718 5.5306 -1.8888 42 1 7.3126 7.8129 -1.6509 43 1 8.9001 7.2146 -2.1896 44 1 7.9045 6.5236 -4.3533 45 1 6.3173 7.1222 -3.8140 46 1 8.1909 9.2214 -3.5690 47 1 7.7674 11.5510 -7.4107 48 1 4.5791 -0.1880 -1.0220 49 1 5.1698 0.2147 0.6081 50 1 3.7081 -0.7820 0.4122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171515136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:38 Heat of formation + Delta-G solvation = -40.303321 kcal Electronic energy + Delta-G solvation = -28260.299801 eV Core-core repulsion = 24287.931478 eV Total energy + Delta-G solvation = -3972.368323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45856 -39.99487 -38.41083 -37.15292 -35.50738 -34.02720 -33.44665 -32.17208 -30.98509 -30.19785 -28.19765 -28.04006 -27.78270 -24.75442 -24.06480 -22.87305 -21.92642 -21.17603 -20.93186 -20.76865 -18.77787 -17.90283 -17.49564 -16.80941 -16.71931 -16.47869 -16.40416 -15.43451 -15.14207 -14.68623 -14.63577 -14.41830 -14.20197 -13.99248 -13.64146 -13.35884 -13.32041 -13.09228 -13.06701 -13.03400 -12.72189 -12.58549 -12.46702 -12.16506 -11.96392 -11.92117 -11.68381 -11.46855 -11.18025 -10.88892 -10.84221 -10.44107 -10.41053 -10.32325 -10.09401 -9.92372 -9.67603 -9.56849 -9.31910 -8.92052 -8.86875 -7.20110 -5.74480 -3.09669 0.17859 0.77881 2.47684 2.51460 2.93475 3.38041 3.38515 3.41177 3.46150 3.88107 4.04261 4.27451 4.31289 4.42216 4.53141 4.61051 4.61612 4.70836 4.80053 4.82375 4.89187 4.98668 5.16929 5.17388 5.29037 5.31849 5.32857 5.48092 5.49758 5.53381 5.57859 5.64107 5.74429 5.79514 5.81248 5.85431 6.00295 6.06422 6.08065 6.16310 6.18434 6.29543 6.36349 6.64980 6.79116 6.82795 7.15763 7.39784 7.87136 8.02598 8.44866 9.24341 9.96782 10.17087 11.44095 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.002088 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.748648 B =13409.857374 C =14779.436796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.042 3.958 5 N -0.455 5.455 6 C 0.104 3.896 7 C -0.157 4.157 8 C 0.566 3.434 9 O -0.526 6.526 10 N -0.715 5.715 11 C 0.142 3.858 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.130 4.130 17 C 0.156 3.844 18 N -0.758 5.758 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.001 3.999 22 N -0.935 5.935 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.011 4.011 28 C -0.113 4.113 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.024 0.976 46 H 0.360 0.640 47 H 0.259 0.741 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 -22.494 22.671 33.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.218 6.218 3 C 0.018 3.982 4 C -0.115 4.115 5 N -0.164 5.164 6 C -0.056 4.056 7 C -0.162 4.162 8 C 0.353 3.647 9 O -0.403 6.403 10 N -0.367 5.367 11 C 0.038 3.962 12 H 0.110 0.890 13 C -0.222 4.222 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.167 4.167 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.194 4.194 22 N -0.584 5.584 23 Si 0.717 3.283 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.020 4.020 28 C -0.169 4.169 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.042 0.958 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.116 0.884 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.860 -22.672 22.342 33.632 hybrid contribution 0.399 0.882 0.679 1.182 sum -10.461 -21.790 23.021 33.380 Atomic orbital electron populations 1.23173 0.77743 1.04656 1.01698 1.86098 1.21701 1.25430 1.88533 1.19779 0.92345 0.86139 0.99977 1.23121 1.00837 0.87037 1.00500 1.67545 1.11859 1.25969 1.10979 1.22868 0.88804 0.98081 0.95811 1.20719 0.94758 0.93846 1.06875 1.17882 0.86680 0.83567 0.76587 1.90746 1.63079 1.37324 1.49171 1.46031 1.08243 1.08364 1.74090 1.21094 0.79053 0.98518 0.97559 0.88977 1.22181 1.01430 1.02227 0.96329 1.21956 1.02571 0.94788 0.97266 1.21522 1.01431 0.97613 0.94771 1.21778 1.01271 0.95959 0.97738 1.20632 0.97360 0.87554 0.91577 1.42736 1.73478 1.11565 1.12577 1.19088 1.32689 0.98066 0.87479 0.89287 1.24698 1.01222 0.97283 0.96231 1.69711 1.52915 1.19598 1.16135 0.86509 0.79777 0.81187 0.80826 1.21095 1.21731 1.20370 1.19844 0.90822 0.95916 0.95448 1.20920 0.99414 0.92519 1.04082 0.87647 0.92301 0.92177 0.82000 0.82072 0.76402 0.91383 0.92428 0.92179 0.91267 0.90051 0.91704 0.91940 0.92148 0.92072 0.95699 0.95772 0.80742 0.93097 0.90051 0.88438 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.41 9.57 -19.48 -0.19 -2.59 16 3 C 0.07 0.59 6.68 -39.13 -0.26 0.33 16 4 C 0.04 0.36 10.21 -17.30 -0.18 0.19 16 5 N -0.45 -4.61 10.34 -12.80 -0.13 -4.75 16 6 C 0.10 0.96 10.69 -17.14 -0.18 0.77 16 7 C -0.16 -1.57 5.89 -104.84 -0.62 -2.18 16 8 C 0.57 5.97 7.69 -12.32 -0.09 5.88 16 9 O -0.53 -6.83 13.17 5.32 0.07 -6.76 16 10 N -0.72 -6.03 4.48 -54.74 -0.25 -6.28 16 11 C 0.14 1.22 2.57 -67.93 -0.17 1.04 16 12 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 13 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 14 C -0.13 -1.08 4.75 -26.73 -0.13 -1.21 16 15 C -0.12 -1.28 5.10 -26.74 -0.14 -1.42 16 16 C -0.13 -1.87 5.33 -26.73 -0.14 -2.01 16 17 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 18 N -0.76 -18.54 5.41 -59.91 -0.32 -18.86 16 19 C -0.24 -7.10 10.47 -15.06 -0.16 -7.25 16 20 H 0.09 2.78 8.06 -52.48 -0.42 2.35 16 21 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 22 N -0.94 -29.92 13.97 55.49 0.78 -29.14 16 23 Si 0.89 22.42 27.74 -169.99 -4.71 17.70 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 C -0.01 -0.12 5.97 -103.76 -0.62 -0.73 16 28 C -0.11 -1.10 8.70 36.01 0.31 -0.79 16 29 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.16 7.67 -51.93 -0.40 -0.24 16 31 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 32 H 0.16 0.93 6.30 -52.49 -0.33 0.59 16 33 H 0.16 1.08 6.46 -52.49 -0.34 0.74 16 34 H 0.40 2.60 6.70 -40.82 -0.27 2.33 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.36 8.50 5.53 -40.82 -0.23 8.28 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.10 1.04 5.96 -51.93 -0.31 0.73 16 50 H 0.07 0.58 7.44 -51.93 -0.39 0.20 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -35.69 403.67 -7.95 -43.64 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.12 Total: 5.22 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -1.15 Total: -4.26 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.07 Total: -59.03 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.12 Total: -9.36 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.70 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.69 -7.95 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171515136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.338 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds