Wall clock time and date at job start Tue Mar 31 2020 19:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35918 * 116.99985 * 2 1 4 4 C 1.38855 * 120.40629 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99571 * 180.27764 * 4 3 2 6 6 C 1.31679 * 121.94697 * 359.47334 * 5 4 3 7 7 C 1.39528 * 120.68937 * 0.52515 * 6 5 4 8 8 C 1.47856 * 120.52990 * 179.76632 * 7 6 5 9 9 O 1.21547 * 119.99502 * 186.07302 * 8 7 6 10 10 N 1.34777 * 119.99957 * 6.07803 * 8 7 6 11 11 C 1.46498 * 119.99595 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.47749 * 34.99801 * 11 10 8 13 13 C 1.53004 * 109.46830 * 274.99245 * 11 10 8 14 14 C 1.53006 * 109.46844 * 154.99805 * 11 10 8 15 15 C 1.52995 * 109.47265 * 294.99331 * 14 11 10 16 16 C 1.52997 * 109.47389 * 180.02562 * 15 14 11 17 17 C 1.52999 * 109.47273 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.47135 * 180.02562 * 17 16 15 19 19 C 1.36931 * 120.00154 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99662 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00353 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00135 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99939 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46824 * 90.00143 * 23 21 19 25 25 H 1.48502 * 109.47431 * 210.00547 * 23 21 19 26 26 H 1.48500 * 109.46966 * 330.00606 * 23 21 19 27 27 C 1.38853 * 120.40886 * 180.02562 * 3 2 1 28 28 C 1.50701 * 120.87173 * 359.97438 * 27 3 2 29 29 H 1.09002 * 109.46796 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47045 * 299.99934 * 1 2 3 31 31 H 1.08997 * 109.47144 * 60.00164 * 1 2 3 32 32 H 1.07998 * 119.49874 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.65343 * 180.24860 * 6 5 4 34 34 H 0.97003 * 119.99989 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46972 * 179.97438 * 13 11 10 36 36 H 1.08995 * 109.47408 * 300.00764 * 13 11 10 37 37 H 1.08997 * 109.46788 * 60.00581 * 13 11 10 38 38 H 1.09003 * 109.47115 * 54.99825 * 14 11 10 39 39 H 1.09002 * 109.46734 * 174.99831 * 14 11 10 40 40 H 1.08998 * 109.47051 * 300.00469 * 15 14 11 41 41 H 1.09003 * 109.46817 * 60.00013 * 15 14 11 42 42 H 1.09003 * 109.46939 * 300.00463 * 16 15 14 43 43 H 1.09003 * 109.47243 * 60.00135 * 16 15 14 44 44 H 1.08998 * 109.46831 * 300.00125 * 17 16 15 45 45 H 1.09002 * 109.47171 * 60.00290 * 17 16 15 46 46 H 0.97003 * 119.99725 * 359.97438 * 18 17 16 47 47 H 0.97001 * 119.99737 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.46969 * 96.35113 * 28 27 3 49 49 H 1.09003 * 109.46567 * 216.34043 * 28 27 3 50 50 H 1.08993 * 109.47878 * 336.34223 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5620 -0.0049 6 6 3.1953 3.6891 -0.0008 7 6 4.0199 2.5636 -0.0014 8 6 5.4911 2.7104 -0.0020 9 8 6.1997 1.7292 -0.1139 10 7 6.0465 3.9322 0.1216 11 6 7.5043 4.0776 0.1204 12 1 7.9422 3.3432 -0.5554 13 6 8.0404 3.8520 1.5356 14 6 7.8758 5.4863 -0.3472 15 6 7.4499 5.6686 -1.8053 16 6 7.8220 7.0770 -2.2730 17 6 7.3954 7.2595 -3.7310 18 7 7.7523 8.6079 -4.1791 19 6 7.4668 9.0021 -5.4590 20 1 6.9788 8.3187 -6.1382 21 6 7.8054 10.2794 -5.8837 22 7 7.5304 10.6585 -7.1138 23 14 8.6500 11.4611 -4.7091 24 1 10.1223 11.3025 -4.8211 25 1 8.2745 12.8557 -5.0547 26 1 8.2247 11.1643 -3.3176 27 6 3.4321 1.2936 -0.0005 28 6 4.2810 0.0484 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2197 2.3226 0.0005 33 1 3.6365 4.6749 -0.0015 34 1 5.4810 4.7153 0.2106 35 1 9.1250 3.9598 1.5347 36 1 7.6024 4.5865 2.2115 37 1 7.7756 2.8485 1.8687 38 1 7.3661 6.2219 0.2751 39 1 8.9539 5.6242 -0.2637 40 1 7.9596 4.9330 -2.4274 41 1 6.3718 5.5306 -1.8888 42 1 7.3126 7.8129 -1.6509 43 1 8.9001 7.2146 -2.1896 44 1 7.9045 6.5236 -4.3533 45 1 6.3173 7.1222 -3.8140 46 1 8.1909 9.2214 -3.5690 47 1 7.7674 11.5510 -7.4107 48 1 4.5791 -0.1880 -1.0220 49 1 5.1698 0.2147 0.6081 50 1 3.7081 -0.7820 0.4122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171515136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:37 Heat of formation + Delta-G solvation = -64.943401 kcal Electronic energy + Delta-G solvation = -28261.368275 eV Core-core repulsion = 24287.931478 eV Total energy + Delta-G solvation = -3973.436797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14156 -40.71335 -39.02386 -38.10770 -36.99787 -34.92718 -34.66273 -33.46420 -32.45326 -30.99686 -29.04790 -28.85432 -28.49598 -25.86955 -25.16967 -23.69694 -23.31103 -22.23281 -21.95814 -21.56976 -19.63645 -19.40723 -18.56290 -17.47598 -17.37345 -17.16237 -17.02131 -16.63277 -16.27209 -16.10806 -15.83259 -15.22503 -15.14280 -14.87929 -14.78462 -14.61150 -14.22593 -14.13703 -13.99081 -13.87827 -13.78356 -13.51806 -13.22079 -12.98022 -12.94711 -12.91114 -12.72734 -12.46221 -12.39127 -12.24225 -12.06924 -11.88106 -11.75573 -11.49960 -11.41801 -11.16505 -10.97238 -10.68257 -10.43082 -10.05826 -9.55198 -9.31113 -8.04063 -5.38344 -0.52938 0.07822 1.37613 1.42674 1.50227 1.74223 1.88696 2.32465 2.48417 2.66894 3.26726 3.26900 3.39958 3.50464 3.60639 3.64576 3.89526 4.00662 4.04778 4.09781 4.11961 4.33791 4.36698 4.38228 4.41143 4.52445 4.59318 4.62683 4.66129 4.70255 4.75717 4.78056 4.89389 4.93714 4.99628 5.02397 5.05538 5.10224 5.15791 5.27501 5.34001 5.37828 5.45133 5.52531 5.59120 5.73715 6.11441 6.20300 6.46189 6.71658 7.06995 7.13151 7.83186 8.03800 9.17602 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.002088 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.748648 B =13409.857374 C =14779.436796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.065 3.935 4 C 0.043 3.957 5 N -0.473 5.473 6 C 0.102 3.898 7 C -0.165 4.165 8 C 0.565 3.435 9 O -0.557 6.557 10 N -0.705 5.705 11 C 0.144 3.856 12 H 0.072 0.928 13 C -0.157 4.157 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.116 4.116 17 C 0.149 3.851 18 N -0.760 5.760 19 C -0.241 4.241 20 H 0.051 0.949 21 C -0.069 4.069 22 N -0.985 5.985 23 Si 0.963 3.037 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.247 1.247 27 C -0.033 4.033 28 C -0.104 4.104 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.190 0.810 33 H 0.184 0.816 34 H 0.411 0.589 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.015 0.985 45 H 0.019 0.981 46 H 0.368 0.632 47 H 0.259 0.741 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 -21.830 25.486 35.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.017 3.983 4 C -0.114 4.114 5 N -0.182 5.182 6 C -0.057 4.057 7 C -0.171 4.171 8 C 0.352 3.648 9 O -0.437 6.437 10 N -0.357 5.357 11 C 0.040 3.960 12 H 0.091 0.909 13 C -0.216 4.216 14 C -0.154 4.154 15 C -0.148 4.148 16 C -0.154 4.154 17 C 0.023 3.977 18 N -0.406 5.406 19 C -0.372 4.372 20 H 0.069 0.931 21 C -0.261 4.261 22 N -0.636 5.636 23 Si 0.789 3.211 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.171 1.171 27 C -0.042 4.042 28 C -0.161 4.161 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.207 0.793 33 H 0.200 0.800 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.033 0.967 45 H 0.037 0.963 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.065 -22.027 25.201 35.253 hybrid contribution 0.341 0.543 -0.280 0.700 sum -10.724 -21.484 24.922 34.607 Atomic orbital electron populations 1.23499 0.75628 1.06332 1.02794 1.86089 1.23907 1.24910 1.88278 1.19809 0.92039 0.86888 0.99523 1.23548 1.02098 0.86432 0.99346 1.67604 1.12230 1.26710 1.11693 1.23177 0.88636 0.98706 0.95217 1.20732 0.94492 0.94229 1.07601 1.18028 0.86877 0.83724 0.76215 1.90731 1.63742 1.38427 1.50806 1.45976 1.08474 1.08166 1.73088 1.21054 0.78903 0.98190 0.97867 0.90942 1.22122 1.02196 1.01614 0.95635 1.21864 1.03424 0.94838 0.95309 1.21454 1.01533 0.95285 0.96495 1.21665 1.01656 0.98143 0.93920 1.20861 0.96953 0.84925 0.94984 1.42746 1.73442 1.13498 1.10927 1.19062 1.31612 0.97563 0.89007 0.93142 1.25645 1.02629 0.99495 0.98297 1.69909 1.54789 1.20191 1.18688 0.85291 0.78501 0.77677 0.79594 1.20250 1.22088 1.17132 1.20045 0.91726 0.96099 0.96378 1.20788 0.99022 0.92958 1.03294 0.85831 0.90921 0.91280 0.79338 0.79955 0.75078 0.90293 0.91123 0.93829 0.89403 0.89009 0.92627 0.91752 0.91017 0.91456 0.96669 0.96285 0.79889 0.93258 0.90943 0.89685 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -4.73 9.57 -92.63 -0.89 -5.61 16 3 C 0.07 1.15 6.68 22.57 0.15 1.30 16 4 C 0.04 0.68 10.21 84.83 0.87 1.54 16 5 N -0.47 -8.97 10.34 -194.40 -2.01 -10.98 16 6 C 0.10 1.76 10.69 85.03 0.91 2.67 16 7 C -0.17 -3.27 5.89 -20.01 -0.12 -3.39 16 8 C 0.56 11.84 7.69 86.79 0.67 12.51 16 9 O -0.56 -14.93 13.17 -3.86 -0.05 -14.98 16 10 N -0.70 -10.93 4.48 -445.39 -2.00 -12.93 16 11 C 0.14 2.23 2.57 45.00 0.12 2.35 16 12 H 0.07 1.45 7.58 -2.39 -0.02 1.43 16 13 C -0.16 -2.13 9.48 71.98 0.68 -1.44 16 14 C -0.12 -1.61 4.75 30.59 0.15 -1.47 16 15 C -0.11 -2.19 5.10 30.59 0.16 -2.04 16 16 C -0.12 -3.03 5.33 30.59 0.16 -2.87 16 17 C 0.15 5.68 6.26 86.38 0.54 6.22 16 18 N -0.76 -36.31 5.41 -343.45 -1.86 -38.17 16 19 C -0.24 -14.27 10.47 84.03 0.88 -13.39 16 20 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 22 N -0.99 -64.39 13.97 21.65 0.30 -64.09 16 23 Si 0.96 45.61 27.74 68.60 1.90 47.51 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 27 C -0.03 -0.69 5.97 -19.30 -0.12 -0.80 16 28 C -0.10 -2.12 8.70 71.24 0.62 -1.50 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.07 0.23 7.67 -2.39 -0.02 0.21 16 31 H 0.07 0.29 7.67 -2.39 -0.02 0.27 16 32 H 0.19 1.73 6.30 -2.91 -0.02 1.71 16 33 H 0.18 2.10 6.46 -2.91 -0.02 2.08 16 34 H 0.41 4.43 6.70 -92.71 -0.62 3.81 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.27 7.75 -2.39 -0.02 1.25 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.37 16.33 5.53 -92.71 -0.51 15.82 16 47 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 48 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.08 1.93 5.96 -2.39 -0.01 1.91 16 50 H 0.07 1.34 7.44 -2.39 -0.02 1.32 16 Total: -1.00 -79.08 403.67 2.41 -76.67 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.24 Total: 25.41 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 7.24 Total: -2.85 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.56 Total: -126.16 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.94 Total: -20.59 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.90 Total: 47.51 kcal Total: -79.08 2.41 -76.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171515136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.728 kcal (2) G-P(sol) polarization free energy of solvation -79.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds