Wall clock time and date at job start Tue Mar 31 2020 19:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35513 * 116.99405 * 2 1 4 4 C 1.39433 * 120.47242 * 180.02562 * 3 2 1 5 5 C 1.38184 * 118.46793 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.37370 * 180.02562 * 5 4 3 7 7 N 1.32485 * 119.25015 * 359.97438 * 5 4 3 8 8 C 1.32291 * 120.90282 * 0.02562 * 7 5 4 9 9 O 1.35456 * 119.15991 * 180.02562 * 8 7 5 10 10 C 1.42901 * 116.99570 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.64817 * 328.30279 * 10 9 8 12 12 C 1.54594 * 110.72397 * 91.45323 * 10 9 8 13 13 C 1.53998 * 105.14291 * 140.49274 * 12 10 9 14 14 N 1.47907 * 107.05354 * 1.22524 * 13 12 10 15 15 C 1.46900 * 110.99690 * 214.15542 * 14 13 12 16 16 H 1.09000 * 109.46984 * 179.43408 * 15 14 13 17 17 C 1.53000 * 109.47213 * 299.43618 * 15 14 13 18 18 C 1.52999 * 109.47251 * 59.43682 * 15 14 13 19 19 C 1.52996 * 109.47175 * 175.87298 * 18 15 14 20 20 C 1.50703 * 109.47111 * 185.10932 * 19 18 15 21 21 H 1.07995 * 120.00116 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00102 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00198 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00063 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47406 * 89.99534 * 24 22 20 26 26 H 1.48500 * 109.47306 * 210.00196 * 24 22 20 27 27 H 1.48507 * 109.46892 * 330.00022 * 24 22 20 28 28 C 1.48536 * 105.82223 * 334.66963 * 14 13 12 29 29 N 1.32307 * 121.67055 * 0.27491 * 8 7 5 30 30 H 1.09002 * 109.47634 * 300.00335 * 1 2 3 31 31 H 1.09004 * 109.46982 * 60.00617 * 1 2 3 32 32 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.76212 * 359.96771 * 4 3 2 34 34 H 1.09003 * 109.47260 * 269.97328 * 6 5 4 35 35 H 1.09000 * 109.47364 * 29.97298 * 6 5 4 36 36 H 1.09002 * 109.47530 * 149.97080 * 6 5 4 37 37 H 1.09001 * 110.30788 * 21.57711 * 12 10 9 38 38 H 1.08999 * 110.39822 * 259.45059 * 12 10 9 39 39 H 1.09002 * 109.91787 * 241.87728 * 13 12 10 40 40 H 1.08992 * 110.08321 * 120.66961 * 13 12 10 41 41 H 1.09000 * 109.46864 * 60.00272 * 17 15 14 42 42 H 1.09000 * 109.46825 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.47183 * 299.99953 * 17 15 14 44 44 H 1.08996 * 109.47300 * 295.87915 * 18 15 14 45 45 H 1.09008 * 109.47088 * 55.87535 * 18 15 14 46 46 H 1.08997 * 109.47740 * 305.11065 * 19 18 15 47 47 H 1.09005 * 109.46925 * 65.11317 * 19 18 15 48 48 H 0.96997 * 120.00172 * 180.02562 * 23 22 20 49 49 H 1.08993 * 110.66760 * 157.64362 * 28 14 13 50 50 H 1.09006 * 110.66432 * 280.77513 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4359 1.2921 -0.0005 5 6 4.0196 2.5446 0.0000 6 6 5.5200 2.6860 -0.0011 7 7 3.2454 3.6196 0.0005 8 6 1.9272 3.5076 0.0010 9 8 1.1694 4.6304 0.0010 10 6 -0.2489 4.4557 0.0010 11 1 -0.5242 3.5474 -0.5350 12 6 -0.7963 4.4252 1.4464 13 6 -2.1178 5.2142 1.3928 14 7 -2.3146 5.6358 -0.0112 15 6 -2.9732 6.9471 -0.0796 16 1 -3.0966 7.2377 -1.1229 17 6 -4.3451 6.8645 0.5926 18 6 -2.1139 7.9877 0.6413 19 6 -2.7476 9.3711 0.4821 20 6 -1.8387 10.4122 1.0832 21 1 -0.9025 10.1166 1.5333 22 6 -2.2023 11.7419 1.0585 23 7 -1.4089 12.6504 1.5826 24 14 -3.8218 12.2531 0.2805 25 1 -4.8925 12.2360 1.3094 26 1 -3.6926 13.6234 -0.2769 27 1 -4.1680 11.3059 -0.8097 28 6 -0.9572 5.6899 -0.6119 29 7 1.3304 2.3268 0.0064 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0435 0.3993 -0.0004 34 1 5.8825 2.7197 1.0263 35 1 5.9648 1.8342 -0.5156 36 1 5.7979 3.6063 -0.5148 37 1 -0.0949 4.9079 2.1269 38 1 -0.9816 3.3981 1.7609 39 1 -2.0535 6.0904 2.0381 40 1 -2.9455 4.5799 1.7095 41 1 -4.2216 6.5739 1.6359 42 1 -4.8340 7.8374 0.5414 43 1 -4.9573 6.1232 0.0790 44 1 -2.0510 7.7365 1.7001 45 1 -1.1130 7.9946 0.2095 46 1 -2.8937 9.5842 -0.5768 47 1 -3.7103 9.3908 0.9929 48 1 -1.6648 13.5859 1.5655 49 1 -1.0128 5.6022 -1.6968 50 1 -0.4458 6.6088 -0.3248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:16 Heat of formation + Delta-G solvation = -13.899441 kcal Electronic energy + Delta-G solvation = -29278.366962 eV Core-core repulsion = 25307.143598 eV Total energy + Delta-G solvation = -3971.223365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68662 -39.95769 -38.99040 -37.92738 -34.65747 -34.09499 -32.65244 -31.92256 -30.20616 -29.29352 -29.20185 -27.82852 -27.22936 -25.39773 -24.18502 -23.14530 -22.61101 -21.13935 -20.87137 -19.24719 -18.87396 -18.39467 -17.21268 -16.86318 -16.70932 -15.88654 -15.72384 -15.69006 -15.23597 -15.03656 -14.46316 -14.24751 -14.14371 -13.94533 -13.75535 -13.48678 -13.28599 -12.93416 -12.69279 -12.60907 -12.50468 -12.41813 -12.13265 -11.86938 -11.67911 -11.48507 -11.38331 -11.28693 -11.18563 -10.81460 -10.79674 -10.64511 -10.49406 -10.29593 -9.93443 -9.81676 -9.64617 -9.56305 -9.19884 -9.02016 -8.52562 -8.09226 -6.03276 -4.01268 0.71474 0.87257 2.24526 2.51530 3.30415 3.38086 3.41419 3.44543 3.60918 4.03695 4.34870 4.43986 4.45493 4.51652 4.60447 4.81754 4.85820 4.89965 4.91245 4.96683 5.19206 5.20196 5.24039 5.29458 5.30385 5.32768 5.39192 5.51587 5.55405 5.71110 5.72515 5.79499 5.82180 5.91872 5.96396 6.02034 6.14296 6.18251 6.39076 6.42978 6.47333 6.56372 6.60978 6.87989 6.97274 7.04922 7.21113 7.29619 7.42193 7.80365 7.86992 8.55155 9.01861 9.59093 11.10340 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.002450 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.706892 B =11424.689662 C =12770.144845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.299 6.299 3 C 0.400 3.600 4 C -0.290 4.290 5 C 0.237 3.763 6 C -0.105 4.105 7 N -0.545 5.545 8 C 0.549 3.451 9 O -0.272 6.272 10 C 0.093 3.907 11 H 0.102 0.898 12 C -0.145 4.145 13 C 0.030 3.970 14 N -0.507 5.507 15 C 0.066 3.934 16 H 0.082 0.918 17 C -0.141 4.141 18 C -0.137 4.137 19 C -0.008 4.008 20 C -0.520 4.520 21 H 0.070 0.930 22 C 0.065 3.935 23 N -0.904 5.904 24 Si 0.879 3.121 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.265 1.265 28 C 0.032 3.968 29 N -0.624 5.624 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.263 0.737 49 H 0.089 0.911 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 -28.096 -3.723 29.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.203 6.203 3 C 0.214 3.786 4 C -0.314 4.314 5 C 0.094 3.906 6 C -0.162 4.162 7 N -0.276 5.276 8 C 0.247 3.753 9 O -0.172 6.172 10 C 0.036 3.964 11 H 0.120 0.880 12 C -0.184 4.184 13 C -0.098 4.098 14 N -0.231 5.231 15 C -0.042 4.042 16 H 0.101 0.899 17 C -0.198 4.198 18 C -0.175 4.175 19 C -0.046 4.046 20 C -0.558 4.558 21 H 0.088 0.912 22 C -0.136 4.136 23 N -0.543 5.543 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.189 1.189 28 C -0.096 4.096 29 N -0.371 5.371 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.171 0.829 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.033 0.967 47 H 0.032 0.968 48 H 0.072 0.928 49 H 0.108 0.892 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.488 -27.454 -3.969 28.277 hybrid contribution -0.322 0.271 0.181 0.458 sum 5.165 -27.183 -3.788 27.927 Atomic orbital electron populations 1.22993 0.76337 1.03499 1.03060 1.86251 1.23656 1.23818 1.86581 1.19741 0.89144 0.83884 0.85871 1.21535 0.92416 1.00517 1.16890 1.21355 0.97019 0.86131 0.86099 1.20812 0.86687 1.04528 1.04173 1.67520 1.02747 1.33971 1.23370 1.20263 0.85990 0.83230 0.85803 1.86202 1.20135 1.25258 1.85584 1.23426 0.74743 1.00745 0.97524 0.88031 1.22841 0.97705 1.01419 0.96398 1.22883 0.96186 0.99416 0.91285 1.65116 1.16167 1.27819 1.14006 1.22000 0.94538 0.86891 1.00741 0.89940 1.21826 0.95837 1.02028 1.00116 1.22168 0.99191 0.96532 0.99651 1.19530 0.96258 0.92190 0.96622 1.21165 1.06156 0.90705 1.37813 0.91223 1.25045 0.96891 0.96658 0.94959 1.69920 1.37253 1.01352 1.45788 0.86781 0.84420 0.77860 0.80253 1.20331 1.21413 1.18943 1.23313 0.89422 0.96924 0.99956 1.67596 1.42014 0.98803 1.28664 0.91801 0.91820 0.88097 0.82869 0.89120 0.89649 0.89319 0.90476 0.90650 0.91673 0.90340 0.92880 0.91455 0.92775 0.92490 0.92115 0.96697 0.96804 0.92772 0.89230 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.41 101.05 1.05 1.31 16 2 O -0.30 -2.82 10.49 -18.23 -0.19 -3.02 16 3 C 0.40 4.36 7.53 -16.71 -0.13 4.23 16 4 C -0.29 -2.67 9.80 -39.16 -0.38 -3.06 16 5 C 0.24 2.39 6.81 -82.33 -0.56 1.83 16 6 C -0.10 -0.63 10.21 36.01 0.37 -0.26 16 7 N -0.54 -7.43 10.40 -11.02 -0.11 -7.55 16 8 C 0.55 7.78 8.48 -91.29 -0.77 7.00 16 9 O -0.27 -4.11 9.94 -18.06 -0.18 -4.29 16 10 C 0.09 1.23 3.23 -24.87 -0.08 1.15 16 11 H 0.10 1.28 7.10 -51.93 -0.37 0.92 16 12 C -0.15 -1.82 6.69 -25.37 -0.17 -1.99 16 13 C 0.03 0.40 5.18 -2.75 -0.01 0.38 16 14 N -0.51 -7.23 5.32 -222.49 -1.18 -8.41 16 15 C 0.07 1.06 2.55 -67.71 -0.17 0.89 16 16 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.14 -2.07 8.84 37.16 0.33 -1.74 16 18 C -0.14 -2.69 4.00 -26.73 -0.11 -2.79 16 19 C -0.01 -0.19 3.65 -27.88 -0.10 -0.29 16 20 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 21 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 22 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 23 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 24 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 28 C 0.03 0.45 6.12 -1.90 -0.01 0.44 16 29 N -0.62 -7.75 7.67 -14.79 -0.11 -7.86 16 30 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.96 5.34 -51.93 -0.28 0.69 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.75 7.09 -51.93 -0.37 0.38 16 42 H 0.07 1.05 6.65 -51.93 -0.35 0.71 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.13 6.13 -51.93 -0.32 0.81 16 45 H 0.06 1.24 5.83 -51.92 -0.30 0.94 16 46 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 47 H 0.01 0.32 6.22 -51.93 -0.32 0.00 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.08 1.25 5.53 -51.93 -0.29 0.97 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -33.26 393.63 -8.97 -42.23 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -8.04 Total: -0.28 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.18 Total: -6.43 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.64 Total: -51.36 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.37 Total: -7.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.26 -8.97 -42.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.328 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds