Wall clock time and date at job start Tue Mar 31 2020 19:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35513 * 116.99405 * 2 1 4 4 C 1.39433 * 120.47242 * 180.02562 * 3 2 1 5 5 C 1.38184 * 118.46793 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.37370 * 180.02562 * 5 4 3 7 7 N 1.32485 * 119.25015 * 359.97438 * 5 4 3 8 8 C 1.32291 * 120.90282 * 0.02562 * 7 5 4 9 9 O 1.35456 * 119.15991 * 180.02562 * 8 7 5 10 10 C 1.42901 * 116.99570 * 179.97438 * 9 8 7 11 11 H 1.08997 * 110.64817 * 328.30279 * 10 9 8 12 12 C 1.54594 * 110.72397 * 91.45323 * 10 9 8 13 13 C 1.53998 * 105.14291 * 140.49274 * 12 10 9 14 14 N 1.47907 * 107.05354 * 1.22524 * 13 12 10 15 15 C 1.46900 * 110.99690 * 214.15542 * 14 13 12 16 16 H 1.09000 * 109.46984 * 179.43408 * 15 14 13 17 17 C 1.53000 * 109.47213 * 299.43618 * 15 14 13 18 18 C 1.52999 * 109.47251 * 59.43682 * 15 14 13 19 19 C 1.52996 * 109.47175 * 175.87298 * 18 15 14 20 20 C 1.50703 * 109.47111 * 185.10932 * 19 18 15 21 21 H 1.07995 * 120.00116 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00102 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00198 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00063 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47406 * 89.99534 * 24 22 20 26 26 H 1.48500 * 109.47306 * 210.00196 * 24 22 20 27 27 H 1.48507 * 109.46892 * 330.00022 * 24 22 20 28 28 C 1.48536 * 105.82223 * 334.66963 * 14 13 12 29 29 N 1.32307 * 121.67055 * 0.27491 * 8 7 5 30 30 H 1.09002 * 109.47634 * 300.00335 * 1 2 3 31 31 H 1.09004 * 109.46982 * 60.00617 * 1 2 3 32 32 H 1.09000 * 109.47076 * 179.97438 * 1 2 3 33 33 H 1.07996 * 120.76212 * 359.96771 * 4 3 2 34 34 H 1.09003 * 109.47260 * 269.97328 * 6 5 4 35 35 H 1.09000 * 109.47364 * 29.97298 * 6 5 4 36 36 H 1.09002 * 109.47530 * 149.97080 * 6 5 4 37 37 H 1.09001 * 110.30788 * 21.57711 * 12 10 9 38 38 H 1.08999 * 110.39822 * 259.45059 * 12 10 9 39 39 H 1.09002 * 109.91787 * 241.87728 * 13 12 10 40 40 H 1.08992 * 110.08321 * 120.66961 * 13 12 10 41 41 H 1.09000 * 109.46864 * 60.00272 * 17 15 14 42 42 H 1.09000 * 109.46825 * 180.02562 * 17 15 14 43 43 H 1.09002 * 109.47183 * 299.99953 * 17 15 14 44 44 H 1.08996 * 109.47300 * 295.87915 * 18 15 14 45 45 H 1.09008 * 109.47088 * 55.87535 * 18 15 14 46 46 H 1.08997 * 109.47740 * 305.11065 * 19 18 15 47 47 H 1.09005 * 109.46925 * 65.11317 * 19 18 15 48 48 H 0.96997 * 120.00172 * 180.02562 * 23 22 20 49 49 H 1.08993 * 110.66760 * 157.64362 * 28 14 13 50 50 H 1.09006 * 110.66432 * 280.77513 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2075 0.0000 4 6 3.4359 1.2921 -0.0005 5 6 4.0196 2.5446 0.0000 6 6 5.5200 2.6860 -0.0011 7 7 3.2454 3.6196 0.0005 8 6 1.9272 3.5076 0.0010 9 8 1.1694 4.6304 0.0010 10 6 -0.2489 4.4557 0.0010 11 1 -0.5242 3.5474 -0.5350 12 6 -0.7963 4.4252 1.4464 13 6 -2.1178 5.2142 1.3928 14 7 -2.3146 5.6358 -0.0112 15 6 -2.9732 6.9471 -0.0796 16 1 -3.0966 7.2377 -1.1229 17 6 -4.3451 6.8645 0.5926 18 6 -2.1139 7.9877 0.6413 19 6 -2.7476 9.3711 0.4821 20 6 -1.8387 10.4122 1.0832 21 1 -0.9025 10.1166 1.5333 22 6 -2.2023 11.7419 1.0585 23 7 -1.4089 12.6504 1.5826 24 14 -3.8218 12.2531 0.2805 25 1 -4.8925 12.2360 1.3094 26 1 -3.6926 13.6234 -0.2769 27 1 -4.1680 11.3059 -0.8097 28 6 -0.9572 5.6899 -0.6119 29 7 1.3304 2.3268 0.0064 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0435 0.3993 -0.0004 34 1 5.8825 2.7197 1.0263 35 1 5.9648 1.8342 -0.5156 36 1 5.7979 3.6063 -0.5148 37 1 -0.0949 4.9079 2.1269 38 1 -0.9816 3.3981 1.7609 39 1 -2.0535 6.0904 2.0381 40 1 -2.9455 4.5799 1.7095 41 1 -4.2216 6.5739 1.6359 42 1 -4.8340 7.8374 0.5414 43 1 -4.9573 6.1232 0.0790 44 1 -2.0510 7.7365 1.7001 45 1 -1.1130 7.9946 0.2095 46 1 -2.8937 9.5842 -0.5768 47 1 -3.7103 9.3908 0.9929 48 1 -1.6648 13.5859 1.5655 49 1 -1.0128 5.6022 -1.6968 50 1 -0.4458 6.6088 -0.3248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:14 Heat of formation + Delta-G solvation = -40.031134 kcal Electronic energy + Delta-G solvation = -29279.500118 eV Core-core repulsion = 25307.143598 eV Total energy + Delta-G solvation = -3972.356520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.54970 -41.03881 -39.85922 -38.94132 -36.16783 -34.94486 -34.54592 -32.85583 -31.86825 -30.37030 -29.92576 -28.99026 -27.82799 -27.21521 -25.08974 -24.14322 -23.75158 -22.84530 -21.94223 -20.33986 -19.98480 -19.34734 -18.92653 -18.03514 -17.56989 -17.09994 -16.77372 -16.45559 -16.29237 -16.21374 -15.93635 -15.59586 -15.26639 -14.96207 -14.81362 -14.66935 -14.51535 -14.26116 -14.07917 -13.61543 -13.39842 -13.19946 -13.11290 -13.03905 -12.94036 -12.75961 -12.59180 -12.50899 -12.36251 -12.10607 -11.98085 -11.82536 -11.79882 -11.75705 -11.57714 -11.35264 -11.20281 -11.13054 -10.76509 -10.49330 -9.84240 -9.38762 -8.31443 -6.36271 -0.11124 0.03568 1.30308 1.34144 1.36883 1.49051 1.80848 2.34693 2.58324 2.76007 2.98879 3.03913 3.36571 3.48302 3.55386 3.74847 3.90723 3.97564 4.07958 4.12339 4.17564 4.26475 4.35924 4.36388 4.39382 4.41719 4.56560 4.60567 4.65799 4.69628 4.73487 4.76159 4.82509 4.86237 4.87794 4.92704 4.94522 4.99034 5.13194 5.17748 5.27847 5.30554 5.46744 5.50865 5.64844 5.65560 5.70172 5.84804 5.95757 6.18539 6.26377 6.71888 6.98113 7.28332 8.85892 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.002450 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.706892 B =11424.689662 C =12770.144845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.385 3.615 4 C -0.278 4.278 5 C 0.227 3.773 6 C -0.102 4.102 7 N -0.578 5.578 8 C 0.529 3.471 9 O -0.297 6.297 10 C 0.101 3.899 11 H 0.111 0.889 12 C -0.138 4.138 13 C 0.031 3.969 14 N -0.495 5.495 15 C 0.075 3.925 16 H 0.085 0.915 17 C -0.137 4.137 18 C -0.128 4.128 19 C -0.003 4.003 20 C -0.535 4.535 21 H 0.022 0.978 22 C 0.000 4.000 23 N -0.954 5.954 24 Si 0.955 3.045 25 H -0.263 1.263 26 H -0.285 1.285 27 H -0.242 1.242 28 C 0.030 3.970 29 N -0.627 5.627 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.187 0.813 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.019 0.981 47 H 0.027 0.973 48 H 0.266 0.734 49 H 0.100 0.900 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 -30.913 -4.719 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.203 6.203 3 C 0.199 3.801 4 C -0.301 4.301 5 C 0.085 3.915 6 C -0.158 4.158 7 N -0.310 5.310 8 C 0.226 3.774 9 O -0.198 6.198 10 C 0.044 3.956 11 H 0.129 0.871 12 C -0.176 4.176 13 C -0.097 4.097 14 N -0.219 5.219 15 C -0.034 4.034 16 H 0.103 0.897 17 C -0.194 4.194 18 C -0.166 4.166 19 C -0.040 4.040 20 C -0.573 4.573 21 H 0.040 0.960 22 C -0.196 4.196 23 N -0.595 5.595 24 Si 0.777 3.223 25 H -0.188 1.188 26 H -0.211 1.211 27 H -0.165 1.165 28 C -0.098 4.098 29 N -0.374 5.374 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.204 0.796 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.118 0.882 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.978 -30.327 -4.963 30.987 hybrid contribution 0.325 1.058 0.546 1.234 sum 4.303 -29.269 -4.417 29.912 Atomic orbital electron populations 1.23203 0.75129 1.05367 1.02580 1.86268 1.24869 1.22818 1.86377 1.20120 0.90024 0.83917 0.86039 1.21921 0.92101 1.01352 1.14682 1.22059 0.98477 0.85727 0.85229 1.20965 0.84028 1.05557 1.05293 1.67525 1.02977 1.36061 1.24458 1.20343 0.86279 0.83409 0.87370 1.86146 1.20833 1.26631 1.86203 1.23358 0.74315 1.00237 0.97740 0.87140 1.22784 0.96900 1.02159 0.95785 1.22938 0.97342 0.99096 0.90281 1.65175 1.15912 1.26204 1.14576 1.21887 0.94759 0.86369 1.00370 0.89711 1.21799 0.94773 1.02364 1.00502 1.22037 0.98935 0.95921 0.99743 1.19458 0.95755 0.92623 0.96207 1.21535 1.05449 0.92566 1.37781 0.95993 1.26112 1.01464 0.96515 0.95511 1.70090 1.39882 1.01950 1.47604 0.85593 0.78911 0.77776 0.80003 1.18822 1.21072 1.16533 1.23315 0.89423 0.96334 1.00735 1.67525 1.42287 0.98728 1.28897 0.92250 0.92296 0.85096 0.79564 0.87815 0.86521 0.90080 0.92149 0.88758 0.93521 0.87997 0.92501 0.92205 0.90468 0.93259 0.93935 0.96259 0.95504 0.92503 0.88155 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.41 113.37 1.18 1.56 16 2 O -0.30 -5.09 10.49 -88.15 -0.92 -6.01 16 3 C 0.38 7.91 7.53 84.84 0.64 8.55 16 4 C -0.28 -4.59 9.80 22.54 0.22 -4.37 16 5 C 0.23 4.35 6.81 42.45 0.29 4.63 16 6 C -0.10 -1.04 10.21 71.24 0.73 -0.31 16 7 N -0.58 -16.09 10.40 -301.74 -3.14 -19.22 16 8 C 0.53 15.35 8.48 180.58 1.53 16.88 16 9 O -0.30 -9.43 9.94 -87.54 -0.87 -10.30 16 10 C 0.10 2.69 3.23 31.80 0.10 2.80 16 11 H 0.11 2.74 7.10 -2.39 -0.02 2.72 16 12 C -0.14 -3.45 6.69 31.47 0.21 -3.24 16 13 C 0.03 0.79 5.18 86.45 0.45 1.24 16 14 N -0.49 -13.61 5.32 -857.83 -4.56 -18.17 16 15 C 0.07 2.31 2.55 44.92 0.11 2.42 16 16 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 17 C -0.14 -3.69 8.84 71.98 0.64 -3.06 16 18 C -0.13 -5.12 4.00 30.59 0.12 -5.00 16 19 C 0.00 -0.12 3.65 29.85 0.11 -0.01 16 20 C -0.54 -32.06 9.66 25.60 0.25 -31.82 16 21 H 0.02 1.46 7.99 -2.91 -0.02 1.44 16 22 C 0.00 0.02 5.47 84.65 0.46 0.48 16 23 N -0.95 -61.78 13.96 21.45 0.30 -61.49 16 24 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 25 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 28 C 0.03 0.87 6.12 86.65 0.53 1.40 16 29 N -0.63 -15.39 7.67 -426.36 -3.27 -18.66 16 30 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.12 0.45 8.09 -2.39 -0.02 0.43 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 1.39 5.34 -2.39 -0.01 1.38 16 40 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 1.48 7.09 -2.39 -0.02 1.47 16 42 H 0.06 1.71 6.65 -2.39 -0.02 1.70 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 2.03 6.13 -2.39 -0.01 2.01 16 45 H 0.04 1.84 5.83 -2.38 -0.01 1.83 16 46 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 47 H 0.03 1.21 6.22 -2.38 -0.01 1.19 16 48 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 49 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 50 H 0.05 1.71 5.53 -2.38 -0.01 1.70 16 Total: -1.00 -75.65 393.63 -2.13 -77.78 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.88 Total: 17.12 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 7.57 Total: -7.85 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -10.67 Total: -117.54 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -1.80 Total: -16.31 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -75.65 -2.13 -77.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.748 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds