Wall clock time and date at job start Tue Mar 31 2020 19:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35511 * 116.99900 * 2 1 4 4 C 1.39425 * 120.47931 * 180.02562 * 3 2 1 5 5 C 1.38180 * 118.47302 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.37798 * 180.02562 * 5 4 3 7 7 N 1.32482 * 119.24716 * 359.97438 * 5 4 3 8 8 C 1.32286 * 120.90732 * 359.97438 * 7 5 4 9 9 O 1.35457 * 119.16888 * 179.97438 * 8 7 5 10 10 C 1.42902 * 117.00052 * 180.02562 * 9 8 7 11 11 H 1.09003 * 110.78379 * 328.20697 * 10 9 8 12 12 C 1.54598 * 110.72271 * 91.45596 * 10 9 8 13 13 C 1.53993 * 105.13634 * 140.31543 * 12 10 9 14 14 N 1.47899 * 107.22626 * 1.12380 * 13 12 10 15 15 C 1.46906 * 111.00026 * 214.25310 * 14 13 12 16 16 H 1.08995 * 109.47609 * 183.20106 * 15 14 13 17 17 C 1.53008 * 109.46642 * 63.20423 * 15 14 13 18 18 C 1.53000 * 109.47239 * 303.20969 * 15 14 13 19 19 C 1.53001 * 109.46684 * 294.71642 * 18 15 14 20 20 C 1.50704 * 109.47182 * 175.21851 * 19 18 15 21 21 H 1.08005 * 119.99565 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00292 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00468 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47162 * 89.99930 * 24 22 20 26 26 H 1.48501 * 109.47371 * 209.99947 * 24 22 20 27 27 H 1.48507 * 109.47241 * 329.99984 * 24 22 20 28 28 C 1.48809 * 105.68151 * 334.90507 * 14 13 12 29 29 N 1.32312 * 121.66941 * 0.27836 * 8 7 5 30 30 H 1.08993 * 109.47341 * 60.00114 * 1 2 3 31 31 H 1.09004 * 109.46975 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47120 * 299.99896 * 1 2 3 33 33 H 1.08006 * 120.76068 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.47424 * 269.97903 * 6 5 4 35 35 H 1.09010 * 109.47459 * 29.97731 * 6 5 4 36 36 H 1.08999 * 109.47400 * 149.97276 * 6 5 4 37 37 H 1.09001 * 110.30516 * 21.39647 * 12 10 9 38 38 H 1.08999 * 110.38866 * 259.27240 * 12 10 9 39 39 H 1.08994 * 109.91761 * 120.57727 * 13 12 10 40 40 H 1.09005 * 109.91591 * 241.67255 * 13 12 10 41 41 H 1.09001 * 109.47163 * 306.67963 * 17 15 14 42 42 H 1.08997 * 109.47247 * 66.68853 * 17 15 14 43 43 H 1.09005 * 109.46684 * 186.68641 * 17 15 14 44 44 H 1.08997 * 109.47514 * 54.71898 * 18 15 14 45 45 H 1.09000 * 109.47295 * 174.72329 * 18 15 14 46 46 H 1.08997 * 109.47300 * 295.21952 * 19 18 15 47 47 H 1.09000 * 109.47439 * 55.22172 * 19 18 15 48 48 H 0.97000 * 120.00637 * 180.02562 * 23 22 20 49 49 H 1.08992 * 110.51937 * 280.54547 * 28 14 13 50 50 H 1.09001 * 110.84144 * 157.56312 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4358 1.2921 -0.0005 5 6 4.0197 2.5445 -0.0011 6 6 5.5200 2.6859 -0.0022 7 7 3.2454 3.6195 -0.0016 8 6 1.9273 3.5076 -0.0021 9 8 1.1694 4.6303 -0.0020 10 6 -0.2489 4.4556 -0.0020 11 1 -0.5269 3.5487 -0.5389 12 6 -0.7963 4.4252 1.4435 13 6 -2.1153 5.2181 1.3907 14 7 -2.3135 5.6458 -0.0111 15 6 -2.9671 6.9600 -0.0732 16 1 -3.1522 7.2250 -1.1142 17 6 -2.0591 8.0119 0.5671 18 6 -4.2960 6.9049 0.6831 19 6 -5.2519 5.9498 -0.0345 20 6 -6.5165 5.8047 0.7723 21 1 -6.6274 6.3404 1.7035 22 6 -7.5322 4.9888 0.3212 23 7 -8.6360 4.8625 1.0249 24 14 -7.3407 4.0628 -1.2898 25 1 -6.7272 2.7360 -1.0282 26 1 -8.6746 3.8766 -1.9154 27 1 -6.4681 4.8395 -2.2066 28 6 -0.9535 5.6926 -0.6134 29 7 1.3304 2.3268 0.0034 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.0436 0.3992 -0.0005 34 1 5.8825 2.7204 1.0251 35 1 5.9650 1.8337 -0.5160 36 1 5.7979 3.6058 -0.5167 37 1 -0.0933 4.9051 2.1244 38 1 -0.9844 3.3983 1.7568 39 1 -2.9432 4.5830 1.7057 40 1 -2.0498 6.0914 2.0397 41 1 -1.7776 7.6876 1.5690 42 1 -1.1624 8.1359 -0.0400 43 1 -2.5905 8.9616 0.6286 44 1 -4.1216 6.5495 1.6986 45 1 -4.7361 7.9015 0.7175 46 1 -5.4932 6.3493 -1.0195 47 1 -4.7771 4.9749 -0.1442 48 1 -9.3505 4.2882 0.7077 49 1 -0.4395 6.6096 -0.3255 50 1 -1.0069 5.6076 -1.6988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:19 Heat of formation + Delta-G solvation = -38.599590 kcal Electronic energy + Delta-G solvation = -29468.418194 eV Core-core repulsion = 25496.123751 eV Total energy + Delta-G solvation = -3972.294443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54286 -41.01215 -39.85350 -38.91319 -36.01002 -34.94401 -34.50664 -32.81695 -32.02014 -29.98233 -29.93913 -29.33673 -27.86191 -27.15409 -25.07907 -24.15185 -23.66012 -22.56282 -21.86965 -20.46274 -19.97389 -19.33344 -18.75308 -18.06789 -17.57645 -17.22902 -16.82295 -16.44871 -16.34862 -16.19244 -15.92271 -15.38622 -15.15613 -14.86950 -14.70513 -14.68119 -14.45729 -14.23234 -14.12862 -13.61963 -13.42758 -13.23363 -13.10806 -13.01382 -12.94011 -12.75879 -12.64789 -12.58846 -12.45025 -12.10228 -11.96166 -11.84903 -11.67920 -11.65965 -11.38978 -11.35156 -11.14161 -11.04032 -10.71993 -10.49535 -9.84299 -9.29360 -8.26419 -6.28485 -0.09848 0.02772 1.29280 1.37140 1.38137 1.51846 1.80090 2.38956 2.58811 2.76506 3.01563 3.10109 3.38660 3.49981 3.56187 3.73749 3.92233 3.97798 4.10559 4.15599 4.19526 4.26482 4.31070 4.32861 4.39010 4.42075 4.54005 4.64767 4.66222 4.68858 4.74881 4.78490 4.83906 4.85174 4.88543 4.91387 4.95521 5.00207 5.11857 5.23514 5.31896 5.35895 5.56603 5.62753 5.67687 5.70985 5.73491 5.92944 6.09131 6.17499 6.33687 6.79954 6.97093 7.35944 8.90547 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014300 B = 0.002766 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.618936 B =10122.206119 C =11557.515955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.301 6.301 3 C 0.381 3.619 4 C -0.279 4.279 5 C 0.229 3.771 6 C -0.100 4.100 7 N -0.569 5.569 8 C 0.528 3.472 9 O -0.286 6.286 10 C 0.099 3.901 11 H 0.096 0.904 12 C -0.134 4.134 13 C 0.038 3.962 14 N -0.513 5.513 15 C 0.077 3.923 16 H 0.085 0.915 17 C -0.180 4.180 18 C -0.090 4.090 19 C 0.000 4.000 20 C -0.526 4.526 21 H 0.029 0.971 22 C 0.002 3.998 23 N -0.955 5.955 24 Si 0.951 3.049 25 H -0.269 1.269 26 H -0.286 1.286 27 H -0.248 1.248 28 C 0.040 3.960 29 N -0.634 5.634 30 H 0.056 0.944 31 H 0.129 0.871 32 H 0.056 0.944 33 H 0.185 0.815 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.010 0.990 47 H 0.025 0.975 48 H 0.264 0.736 49 H 0.074 0.926 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.034 -7.259 -3.734 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.204 6.204 3 C 0.196 3.804 4 C -0.302 4.302 5 C 0.087 3.913 6 C -0.157 4.157 7 N -0.301 5.301 8 C 0.226 3.774 9 O -0.187 6.187 10 C 0.041 3.959 11 H 0.114 0.886 12 C -0.173 4.173 13 C -0.090 4.090 14 N -0.238 5.238 15 C -0.031 4.031 16 H 0.103 0.897 17 C -0.239 4.239 18 C -0.127 4.127 19 C -0.038 4.038 20 C -0.565 4.565 21 H 0.047 0.953 22 C -0.194 4.194 23 N -0.596 5.596 24 Si 0.775 3.225 25 H -0.194 1.194 26 H -0.213 1.213 27 H -0.172 1.172 28 C -0.088 4.088 29 N -0.381 5.381 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.202 0.798 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 30.049 -6.897 -4.008 31.090 hybrid contribution -0.557 -0.523 0.247 0.803 sum 29.492 -7.421 -3.761 30.643 Atomic orbital electron populations 1.23146 0.75329 1.05224 1.02401 1.86253 1.24542 1.23264 1.86366 1.20179 0.90156 0.83852 0.86206 1.21930 0.91807 1.01644 1.14791 1.22075 0.98574 0.85587 0.85076 1.20961 0.83713 1.05642 1.05371 1.67541 1.02527 1.35643 1.24428 1.20375 0.86363 0.83404 0.87297 1.86090 1.20233 1.26130 1.86257 1.23296 0.74537 1.00562 0.97458 0.88570 1.22749 0.96639 1.01635 0.96235 1.22779 0.96591 0.99110 0.90529 1.65013 1.16819 1.27139 1.14848 1.21868 0.93624 0.87081 1.00549 0.89654 1.22435 1.00416 0.99812 1.01205 1.21443 0.93641 0.99181 0.98479 1.19394 0.92970 0.96364 0.95053 1.21596 1.01183 1.26486 1.07193 0.95283 1.25988 0.94667 0.97639 1.01074 1.70077 1.07611 1.40805 1.41123 0.85640 0.77438 0.79426 0.79993 1.19389 1.21252 1.17205 1.23312 0.88510 0.96528 1.00406 1.67562 1.42624 0.99074 1.28828 0.92501 0.85294 0.92527 0.79775 0.87682 0.86832 0.89636 0.90385 0.90440 0.91439 0.92117 0.92360 0.91033 0.91138 0.93336 0.92602 0.97158 0.95648 0.92704 0.90839 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.41 113.37 1.18 1.74 16 2 O -0.30 -5.84 10.49 -88.13 -0.92 -6.77 16 3 C 0.38 8.18 7.53 84.84 0.64 8.82 16 4 C -0.28 -4.48 9.80 22.54 0.22 -4.26 16 5 C 0.23 3.86 6.81 42.45 0.29 4.15 16 6 C -0.10 -0.73 10.21 71.24 0.73 -0.01 16 7 N -0.57 -13.80 10.40 -301.74 -3.14 -16.94 16 8 C 0.53 14.07 8.48 180.58 1.53 15.60 16 9 O -0.29 -7.80 9.93 -87.55 -0.87 -8.67 16 10 C 0.10 2.54 3.23 31.80 0.10 2.64 16 11 H 0.10 2.62 7.11 -2.39 -0.02 2.60 16 12 C -0.13 -3.41 6.69 31.47 0.21 -3.20 16 13 C 0.04 1.09 5.04 86.45 0.44 1.53 16 14 N -0.51 -15.43 4.74 -857.09 -4.07 -19.49 16 15 C 0.08 2.33 2.52 44.92 0.11 2.45 16 16 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 17 C -0.18 -4.36 8.37 71.98 0.60 -3.76 16 18 C -0.09 -3.48 4.44 30.59 0.14 -3.34 16 19 C 0.00 -0.02 3.99 29.85 0.12 0.10 16 20 C -0.53 -31.07 9.66 25.60 0.25 -30.83 16 21 H 0.03 1.88 7.99 -2.91 -0.02 1.85 16 22 C 0.00 0.14 5.47 84.65 0.46 0.60 16 23 N -0.95 -61.27 13.96 21.44 0.30 -60.97 16 24 Si 0.95 46.04 27.47 68.60 1.88 47.92 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 27 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 28 C 0.04 1.00 6.09 86.59 0.53 1.53 16 29 N -0.63 -15.88 7.67 -426.36 -3.27 -19.15 16 30 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 31 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.06 1.03 8.12 -2.39 -0.02 1.02 16 33 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 0.21 8.09 -2.38 -0.02 0.19 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 1.90 8.07 -2.39 -0.02 1.88 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 2.27 8.10 -2.39 -0.02 2.25 16 40 H 0.06 1.69 5.29 -2.38 -0.01 1.68 16 41 H 0.06 1.41 5.97 -2.39 -0.01 1.40 16 42 H 0.07 1.51 6.35 -2.39 -0.02 1.49 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.05 1.93 6.67 -2.39 -0.02 1.92 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 47 H 0.03 1.22 7.06 -2.39 -0.02 1.20 16 48 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 49 H 0.07 1.72 5.59 -2.39 -0.01 1.71 16 50 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -73.56 395.42 -1.67 -75.22 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.87 Total: 15.07 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 7.55 Total: -6.23 kcal Atomic # 7 Polarization: -106.37 SS G_CDS: -10.17 Total: -116.55 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.79 Total: -15.43 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.88 Total: 47.92 kcal Total: -73.56 -1.67 -75.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.624 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds