Wall clock time and date at job start Tue Mar 31 2020 19:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35515 * 116.99809 * 2 1 4 4 C 1.39420 * 120.47518 * 180.02562 * 3 2 1 5 5 C 1.38189 * 118.46766 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.37531 * 179.97438 * 5 4 3 7 7 N 1.32487 * 119.24835 * 359.75065 * 5 4 3 8 8 C 1.32286 * 120.90348 * 0.50598 * 7 5 4 9 9 O 1.35454 * 119.16563 * 179.75649 * 8 7 5 10 10 C 1.42904 * 117.00157 * 179.72669 * 9 8 7 11 11 H 1.08998 * 110.87310 * 32.39598 * 10 9 8 12 12 C 1.55138 * 110.99203 * 268.54948 * 10 9 8 13 13 C 1.54310 * 103.01845 * 206.25478 * 12 10 9 14 14 N 1.47437 * 107.23521 * 22.28518 * 13 12 10 15 15 C 1.46904 * 111.00188 * 123.25880 * 14 13 12 16 16 H 1.09004 * 109.47258 * 185.95429 * 15 14 13 17 17 C 1.52995 * 109.46838 * 305.94964 * 15 14 13 18 18 C 1.52994 * 109.47126 * 65.95264 * 15 14 13 19 19 C 1.53003 * 109.47327 * 65.00386 * 18 15 14 20 20 C 1.50703 * 109.46995 * 180.02562 * 19 18 15 21 21 H 1.07996 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99482 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00552 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99670 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47195 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47160 * 119.99940 * 24 22 20 27 27 H 1.48503 * 109.47353 * 240.00071 * 24 22 20 28 28 C 1.47844 * 108.56609 * 0.98613 * 14 13 12 29 29 N 1.32311 * 121.66896 * 359.48416 * 8 7 5 30 30 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47505 * 300.00041 * 1 2 3 32 32 H 1.09005 * 109.46730 * 60.00806 * 1 2 3 33 33 H 1.07996 * 120.76752 * 359.95424 * 4 3 2 34 34 H 1.08995 * 109.46939 * 89.99917 * 6 5 4 35 35 H 1.08999 * 109.46916 * 210.00407 * 6 5 4 36 36 H 1.09001 * 109.46710 * 329.99816 * 6 5 4 37 37 H 1.09003 * 110.70170 * 87.87345 * 12 10 9 38 38 H 1.09000 * 110.70929 * 324.63988 * 12 10 9 39 39 H 1.09007 * 109.88978 * 262.88106 * 13 12 10 40 40 H 1.08998 * 110.02491 * 141.76867 * 13 12 10 41 41 H 1.09000 * 109.47818 * 306.57645 * 17 15 14 42 42 H 1.09007 * 109.46793 * 66.57505 * 17 15 14 43 43 H 1.09001 * 109.47061 * 186.57116 * 17 15 14 44 44 H 1.09004 * 109.47343 * 304.99725 * 18 15 14 45 45 H 1.09000 * 109.46946 * 185.00063 * 18 15 14 46 46 H 1.09000 * 109.46843 * 299.99740 * 19 18 15 47 47 H 1.08990 * 109.47233 * 59.99593 * 19 18 15 48 48 H 0.97000 * 120.00560 * 179.97438 * 23 22 20 49 49 H 1.09011 * 110.36906 * 94.73738 * 28 14 13 50 50 H 1.08999 * 110.37495 * 217.07125 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2920 -0.0005 5 6 4.0196 2.5445 -0.0011 6 6 5.5200 2.6860 -0.0011 7 7 3.2454 3.6196 -0.0061 8 6 1.9273 3.5076 -0.0005 9 8 1.1694 4.6303 -0.0009 10 6 -0.2489 4.4557 -0.0008 11 1 -0.5293 3.5549 0.5451 12 6 -0.8050 4.4236 -1.4488 13 6 -2.2588 4.9105 -1.2737 14 7 -2.3147 5.6752 -0.0144 15 6 -2.8148 7.0368 -0.2470 16 1 -2.7466 7.6117 0.6767 17 6 -1.9717 7.7114 -1.3309 18 6 -4.2742 6.9733 -0.7016 19 6 -5.1373 6.4131 0.4307 20 6 -6.5748 6.3500 -0.0175 21 1 -6.8456 6.6763 -1.0107 22 6 -7.5440 5.8746 0.8402 23 7 -7.2140 5.4758 2.0492 24 14 -9.3259 5.7970 0.2850 25 1 -9.4326 6.2997 -1.1082 26 1 -9.8012 4.3913 0.3412 27 1 -10.1605 6.6379 1.1804 28 6 -0.9615 5.7022 0.5805 29 7 1.3304 2.3268 0.0000 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 4.0435 0.3993 -0.0002 34 1 5.8817 2.7196 -1.0287 35 1 5.7982 3.6063 0.5124 36 1 5.9652 1.8342 0.5132 37 1 -0.7836 3.4093 -1.8474 38 1 -0.2457 5.1034 -2.0916 39 1 -2.9322 4.0551 -1.2182 40 1 -2.5411 5.5509 -2.1092 41 1 -0.9174 7.6527 -1.0605 42 1 -2.1314 7.2052 -2.2829 43 1 -2.2658 8.7571 -1.4216 44 1 -4.3550 6.3256 -1.5747 45 1 -4.6184 7.9749 -0.9593 46 1 -4.7932 5.4115 0.6884 47 1 -5.0566 7.0608 1.3036 48 1 -7.8959 5.1417 2.6528 49 1 -0.4360 6.6110 0.2870 50 1 -1.0228 5.6323 1.6665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:24 Heat of formation + Delta-G solvation = -17.030076 kcal Electronic energy + Delta-G solvation = -29320.285140 eV Core-core repulsion = 25348.926021 eV Total energy + Delta-G solvation = -3971.359119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.68065 -39.92742 -38.94124 -37.87491 -34.41408 -34.05937 -32.63210 -31.89650 -29.86155 -29.27242 -28.81397 -28.14771 -27.18210 -25.11606 -24.16766 -23.11958 -22.40629 -21.22792 -20.72545 -19.27487 -18.88493 -18.35192 -17.22413 -16.73550 -16.16014 -15.95528 -15.75564 -15.66420 -15.38493 -14.97156 -14.45893 -14.25189 -14.05572 -13.84465 -13.69323 -13.40840 -12.97428 -12.92468 -12.73940 -12.46206 -12.36723 -12.28054 -11.99996 -11.74456 -11.62656 -11.52117 -11.29444 -11.24428 -11.00067 -10.85124 -10.80496 -10.54090 -10.42788 -10.30623 -10.12037 -9.63460 -9.61343 -9.22539 -9.01747 -8.88828 -8.24598 -7.88759 -5.89589 -3.90983 0.70909 0.87330 2.23007 2.56239 3.35051 3.42517 3.43964 3.46380 3.62429 4.07899 4.34706 4.43926 4.52881 4.60237 4.64632 4.82027 4.88188 4.96706 5.02814 5.03872 5.13962 5.24702 5.26091 5.31998 5.37167 5.44949 5.45935 5.50400 5.52827 5.61554 5.69794 5.76687 5.82565 5.94801 6.03779 6.09967 6.21861 6.32157 6.39091 6.48986 6.58049 6.62878 6.84755 7.03271 7.24813 7.31532 7.46785 7.84101 7.85128 8.05732 8.20565 8.55804 9.18184 9.71795 11.21376 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.002409 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.906224 B =11618.312823 C =12781.224397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.299 6.299 3 C 0.402 3.598 4 C -0.290 4.290 5 C 0.235 3.765 6 C -0.104 4.104 7 N -0.548 5.548 8 C 0.549 3.451 9 O -0.275 6.275 10 C 0.086 3.914 11 H 0.106 0.894 12 C -0.156 4.156 13 C 0.043 3.957 14 N -0.500 5.500 15 C 0.075 3.925 16 H 0.080 0.920 17 C -0.187 4.187 18 C -0.101 4.101 19 C 0.029 3.971 20 C -0.518 4.518 21 H 0.051 0.949 22 C 0.056 3.944 23 N -0.894 5.894 24 Si 0.886 3.114 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.045 3.955 29 N -0.622 5.622 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.031 0.969 47 H 0.010 0.990 48 H 0.258 0.742 49 H 0.061 0.939 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.858 -8.665 -5.492 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.202 6.202 3 C 0.215 3.785 4 C -0.313 4.313 5 C 0.092 3.908 6 C -0.161 4.161 7 N -0.280 5.280 8 C 0.247 3.753 9 O -0.175 6.175 10 C 0.028 3.972 11 H 0.124 0.876 12 C -0.194 4.194 13 C -0.085 4.085 14 N -0.225 5.225 15 C -0.033 4.033 16 H 0.099 0.901 17 C -0.246 4.246 18 C -0.139 4.139 19 C -0.008 4.008 20 C -0.557 4.557 21 H 0.069 0.931 22 C -0.144 4.144 23 N -0.533 5.533 24 Si 0.714 3.286 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.212 1.212 28 C -0.083 4.083 29 N -0.368 5.368 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.028 0.972 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 23.932 -8.157 -4.993 25.773 hybrid contribution -0.572 -0.478 -0.819 1.107 sum 23.360 -8.635 -5.812 25.574 Atomic orbital electron populations 1.23038 0.75960 1.03723 1.03291 1.86249 1.23912 1.23706 1.86378 1.19764 0.89139 0.83961 0.85587 1.21534 0.92460 1.00509 1.16828 1.21325 0.96941 0.86186 0.86339 1.20796 0.86756 1.04469 1.04063 1.67486 1.02739 1.34006 1.23774 1.20241 0.85910 0.83307 0.85875 1.86123 1.20222 1.25419 1.85712 1.23749 0.74510 1.01178 0.97725 0.87611 1.23224 0.97589 1.02461 0.96162 1.22792 0.94333 0.98928 0.92425 1.63863 1.19836 1.14944 1.23846 1.22055 0.96335 0.87287 0.97623 0.90144 1.22561 1.00033 1.01542 1.00442 1.21706 0.91325 1.00152 1.00684 1.19009 0.92547 0.97104 0.92165 1.21369 0.93182 1.41669 0.99433 0.93066 1.24999 0.98659 0.95750 0.95036 1.69986 1.33090 1.43717 1.06552 0.86635 0.85710 0.77548 0.78662 1.19898 1.21148 1.21156 1.23062 0.88989 0.95695 1.00510 1.67627 1.42005 0.98805 1.28394 0.87942 0.91560 0.91715 0.82858 0.89220 0.89451 0.89627 0.90504 0.90913 0.89932 0.91302 0.93067 0.92511 0.92117 0.93359 0.93137 0.95023 0.97197 0.93277 0.92064 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.09 10.49 -18.24 -0.19 -3.28 16 3 C 0.40 4.57 7.53 -16.71 -0.13 4.45 16 4 C -0.29 -2.69 9.80 -39.16 -0.38 -3.07 16 5 C 0.24 2.27 6.82 -82.33 -0.56 1.71 16 6 C -0.10 -0.56 10.21 36.01 0.37 -0.19 16 7 N -0.55 -7.10 10.40 -11.01 -0.11 -7.21 16 8 C 0.55 7.62 8.49 -91.29 -0.77 6.84 16 9 O -0.27 -3.95 10.00 -18.05 -0.18 -4.13 16 10 C 0.09 1.17 3.20 -24.60 -0.08 1.09 16 11 H 0.11 1.50 7.14 -51.93 -0.37 1.13 16 12 C -0.16 -2.00 6.68 -24.91 -0.17 -2.17 16 13 C 0.04 0.63 5.57 -2.84 -0.02 0.62 16 14 N -0.50 -8.27 4.61 -223.30 -1.03 -9.30 16 15 C 0.08 1.27 2.27 -67.72 -0.15 1.12 16 16 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 17 C -0.19 -2.61 8.56 37.16 0.32 -2.29 16 18 C -0.10 -2.06 4.54 -26.73 -0.12 -2.18 16 19 C 0.03 0.75 4.86 -27.88 -0.14 0.61 16 20 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 21 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 24 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 C 0.05 0.66 6.21 -2.30 -0.01 0.64 16 29 N -0.62 -8.02 7.68 -14.79 -0.11 -8.13 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.06 0.58 8.12 -51.93 -0.42 0.15 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.27 8.09 -51.93 -0.42 -0.15 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 40 H 0.07 1.00 4.83 -51.93 -0.25 0.75 16 41 H 0.05 0.67 6.19 -51.93 -0.32 0.35 16 42 H 0.06 0.77 6.25 -51.92 -0.32 0.44 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.97 6.77 -51.93 -0.35 0.62 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.06 0.85 5.94 -51.92 -0.31 0.54 16 50 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -32.94 399.87 -9.30 -42.24 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.21 Total: -1.48 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.20 Total: -5.10 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.52 Total: -51.22 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.37 Total: -7.41 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.94 -9.30 -42.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.209 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds