Wall clock time and date at job start Tue Mar 31 2020 19:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35515 * 116.99809 * 2 1 4 4 C 1.39420 * 120.47518 * 180.02562 * 3 2 1 5 5 C 1.38189 * 118.46766 * 179.97438 * 4 3 2 6 6 C 1.50705 * 120.37531 * 179.97438 * 5 4 3 7 7 N 1.32487 * 119.24835 * 359.75065 * 5 4 3 8 8 C 1.32286 * 120.90348 * 0.50598 * 7 5 4 9 9 O 1.35454 * 119.16563 * 179.75649 * 8 7 5 10 10 C 1.42904 * 117.00157 * 179.72669 * 9 8 7 11 11 H 1.08998 * 110.87310 * 32.39598 * 10 9 8 12 12 C 1.55138 * 110.99203 * 268.54948 * 10 9 8 13 13 C 1.54310 * 103.01845 * 206.25478 * 12 10 9 14 14 N 1.47437 * 107.23521 * 22.28518 * 13 12 10 15 15 C 1.46904 * 111.00188 * 123.25880 * 14 13 12 16 16 H 1.09004 * 109.47258 * 185.95429 * 15 14 13 17 17 C 1.52995 * 109.46838 * 305.94964 * 15 14 13 18 18 C 1.52994 * 109.47126 * 65.95264 * 15 14 13 19 19 C 1.53003 * 109.47327 * 65.00386 * 18 15 14 20 20 C 1.50703 * 109.46995 * 180.02562 * 19 18 15 21 21 H 1.07996 * 120.00160 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99482 * 179.97438 * 20 19 18 23 23 N 1.31511 * 120.00552 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99670 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47195 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47160 * 119.99940 * 24 22 20 27 27 H 1.48503 * 109.47353 * 240.00071 * 24 22 20 28 28 C 1.47844 * 108.56609 * 0.98613 * 14 13 12 29 29 N 1.32311 * 121.66896 * 359.48416 * 8 7 5 30 30 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47505 * 300.00041 * 1 2 3 32 32 H 1.09005 * 109.46730 * 60.00806 * 1 2 3 33 33 H 1.07996 * 120.76752 * 359.95424 * 4 3 2 34 34 H 1.08995 * 109.46939 * 89.99917 * 6 5 4 35 35 H 1.08999 * 109.46916 * 210.00407 * 6 5 4 36 36 H 1.09001 * 109.46710 * 329.99816 * 6 5 4 37 37 H 1.09003 * 110.70170 * 87.87345 * 12 10 9 38 38 H 1.09000 * 110.70929 * 324.63988 * 12 10 9 39 39 H 1.09007 * 109.88978 * 262.88106 * 13 12 10 40 40 H 1.08998 * 110.02491 * 141.76867 * 13 12 10 41 41 H 1.09000 * 109.47818 * 306.57645 * 17 15 14 42 42 H 1.09007 * 109.46793 * 66.57505 * 17 15 14 43 43 H 1.09001 * 109.47061 * 186.57116 * 17 15 14 44 44 H 1.09004 * 109.47343 * 304.99725 * 18 15 14 45 45 H 1.09000 * 109.46946 * 185.00063 * 18 15 14 46 46 H 1.09000 * 109.46843 * 299.99740 * 19 18 15 47 47 H 1.08990 * 109.47233 * 59.99593 * 19 18 15 48 48 H 0.97000 * 120.00560 * 179.97438 * 23 22 20 49 49 H 1.09011 * 110.36906 * 94.73738 * 28 14 13 50 50 H 1.08999 * 110.37495 * 217.07125 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2920 -0.0005 5 6 4.0196 2.5445 -0.0011 6 6 5.5200 2.6860 -0.0011 7 7 3.2454 3.6196 -0.0061 8 6 1.9273 3.5076 -0.0005 9 8 1.1694 4.6303 -0.0009 10 6 -0.2489 4.4557 -0.0008 11 1 -0.5293 3.5549 0.5451 12 6 -0.8050 4.4236 -1.4488 13 6 -2.2588 4.9105 -1.2737 14 7 -2.3147 5.6752 -0.0144 15 6 -2.8148 7.0368 -0.2470 16 1 -2.7466 7.6117 0.6767 17 6 -1.9717 7.7114 -1.3309 18 6 -4.2742 6.9733 -0.7016 19 6 -5.1373 6.4131 0.4307 20 6 -6.5748 6.3500 -0.0175 21 1 -6.8456 6.6763 -1.0107 22 6 -7.5440 5.8746 0.8402 23 7 -7.2140 5.4758 2.0492 24 14 -9.3259 5.7970 0.2850 25 1 -9.4326 6.2997 -1.1082 26 1 -9.8012 4.3913 0.3412 27 1 -10.1605 6.6379 1.1804 28 6 -0.9615 5.7022 0.5805 29 7 1.3304 2.3268 0.0000 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 4.0435 0.3993 -0.0002 34 1 5.8817 2.7196 -1.0287 35 1 5.7982 3.6063 0.5124 36 1 5.9652 1.8342 0.5132 37 1 -0.7836 3.4093 -1.8474 38 1 -0.2457 5.1034 -2.0916 39 1 -2.9322 4.0551 -1.2182 40 1 -2.5411 5.5509 -2.1092 41 1 -0.9174 7.6527 -1.0605 42 1 -2.1314 7.2052 -2.2829 43 1 -2.2658 8.7571 -1.4216 44 1 -4.3550 6.3256 -1.5747 45 1 -4.6184 7.9749 -0.9593 46 1 -4.7932 5.4115 0.6884 47 1 -5.0566 7.0608 1.3036 48 1 -7.8959 5.1417 2.6528 49 1 -0.4360 6.6110 0.2870 50 1 -1.0228 5.6323 1.6665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506347.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:23 Heat of formation + Delta-G solvation = -41.361650 kcal Electronic energy + Delta-G solvation = -29321.340236 eV Core-core repulsion = 25348.926021 eV Total energy + Delta-G solvation = -3972.414215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.54916 -41.03977 -39.85336 -38.89795 -35.99640 -34.94982 -34.45385 -32.79770 -31.54304 -30.12211 -29.93549 -29.28974 -27.85748 -27.02107 -25.08946 -24.12216 -23.66068 -22.80728 -21.97143 -20.38427 -20.01949 -19.33352 -18.35170 -18.07686 -17.60425 -17.19073 -16.78789 -16.49394 -16.45184 -16.34220 -15.86353 -15.32509 -15.06037 -14.91183 -14.65868 -14.49670 -14.35511 -14.13747 -13.94144 -13.67118 -13.38739 -13.15072 -13.08058 -12.99244 -12.88791 -12.81225 -12.74390 -12.56796 -12.39805 -12.24307 -12.09089 -11.89355 -11.77771 -11.64367 -11.37546 -11.23501 -11.13536 -10.91914 -10.50416 -10.48870 -9.84533 -9.16110 -8.13472 -6.23801 -0.10435 0.02537 1.27234 1.40012 1.40088 1.53219 1.79897 2.43555 2.58200 2.75885 3.02058 3.19029 3.35696 3.49513 3.55350 3.73722 3.92412 4.01749 4.09431 4.14771 4.22298 4.28168 4.31324 4.32926 4.39168 4.42209 4.50584 4.65951 4.68958 4.71912 4.76350 4.78635 4.84254 4.86808 4.90393 4.94887 4.97041 5.04466 5.15822 5.30760 5.31999 5.44578 5.59720 5.62619 5.70617 5.87779 6.01188 6.05236 6.15563 6.19859 6.34422 6.96207 6.96451 7.44342 8.98036 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016575 B = 0.002409 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.906224 B =11618.312823 C =12781.224397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.300 6.300 3 C 0.382 3.618 4 C -0.278 4.278 5 C 0.229 3.771 6 C -0.100 4.100 7 N -0.569 5.569 8 C 0.528 3.472 9 O -0.286 6.286 10 C 0.095 3.905 11 H 0.095 0.905 12 C -0.140 4.140 13 C 0.046 3.954 14 N -0.527 5.527 15 C 0.081 3.919 16 H 0.069 0.931 17 C -0.175 4.175 18 C -0.089 4.089 19 C 0.038 3.962 20 C -0.539 4.539 21 H 0.056 0.944 22 C -0.002 4.002 23 N -0.933 5.933 24 Si 0.960 3.040 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.280 1.280 28 C 0.050 3.950 29 N -0.634 5.634 30 H 0.130 0.870 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.186 0.814 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.003 0.997 47 H -0.021 1.021 48 H 0.261 0.739 49 H 0.070 0.930 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.194 -9.284 -7.026 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.204 6.204 3 C 0.196 3.804 4 C -0.301 4.301 5 C 0.087 3.913 6 C -0.157 4.157 7 N -0.302 5.302 8 C 0.226 3.774 9 O -0.187 6.187 10 C 0.038 3.962 11 H 0.113 0.887 12 C -0.178 4.178 13 C -0.082 4.082 14 N -0.252 5.252 15 C -0.028 4.028 16 H 0.088 0.912 17 C -0.234 4.234 18 C -0.127 4.127 19 C 0.001 3.999 20 C -0.577 4.577 21 H 0.074 0.926 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.078 4.078 29 N -0.381 5.381 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.203 0.797 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.022 0.978 47 H -0.003 1.003 48 H 0.069 0.931 49 H 0.088 0.912 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 25.293 -8.791 -6.540 27.564 hybrid contribution -0.925 -0.363 -0.283 1.033 sum 24.368 -9.154 -6.824 26.911 Atomic orbital electron populations 1.23151 0.75319 1.05258 1.02376 1.86255 1.24558 1.23187 1.86371 1.20182 0.90167 0.83842 0.86196 1.21935 0.91793 1.01637 1.14723 1.22097 0.98589 0.85583 0.85067 1.20965 0.83663 1.05632 1.05416 1.67540 1.02496 1.35723 1.24441 1.20366 0.86363 0.83360 0.87353 1.86066 1.20113 1.26237 1.86266 1.23519 0.74692 1.00104 0.97922 0.88692 1.23083 0.96085 1.02888 0.95789 1.22732 0.95313 0.98277 0.91850 1.63729 1.21378 1.14972 1.25100 1.21849 0.94738 0.87931 0.98231 0.91236 1.22420 0.99918 1.01749 0.99293 1.21508 0.92783 0.99859 0.98512 1.18829 0.92905 0.95143 0.93019 1.21816 0.94599 1.41602 0.99729 0.92573 1.25948 1.03728 0.95219 0.95031 1.70128 1.34816 1.44530 1.07862 0.85474 0.79540 0.77773 0.78688 1.18635 1.20506 1.20545 1.22980 0.88173 0.96601 1.00041 1.67558 1.42652 0.99079 1.28846 0.85190 0.92765 0.92335 0.79662 0.87582 0.89713 0.86784 0.89883 0.90134 0.91507 0.90730 0.91895 0.91794 0.91068 0.93000 0.92664 0.97817 1.00281 0.93058 0.91159 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.41 113.37 1.18 1.75 16 2 O -0.30 -5.94 10.49 -88.18 -0.93 -6.86 16 3 C 0.38 8.41 7.53 84.84 0.64 9.05 16 4 C -0.28 -4.61 9.80 22.54 0.22 -4.39 16 5 C 0.23 4.02 6.82 42.45 0.29 4.31 16 6 C -0.10 -0.79 10.21 71.24 0.73 -0.06 16 7 N -0.57 -14.42 10.40 -301.73 -3.14 -17.55 16 8 C 0.53 14.73 8.49 180.58 1.53 16.26 16 9 O -0.29 -8.30 10.00 -87.52 -0.88 -9.18 16 10 C 0.10 2.64 3.20 31.98 0.10 2.74 16 11 H 0.10 2.82 7.14 -2.39 -0.02 2.80 16 12 C -0.14 -3.55 6.68 31.77 0.21 -3.34 16 13 C 0.05 1.35 5.57 86.64 0.48 1.84 16 14 N -0.53 -17.80 4.61 -860.40 -3.97 -21.77 16 15 C 0.08 2.75 2.27 44.91 0.10 2.85 16 16 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 17 C -0.18 -4.60 8.56 71.98 0.62 -3.99 16 18 C -0.09 -3.67 4.54 30.59 0.14 -3.53 16 19 C 0.04 2.06 4.86 29.85 0.15 2.21 16 20 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 21 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 22 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 23 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 24 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 28 C 0.05 1.46 6.21 86.77 0.54 2.00 16 29 N -0.63 -16.49 7.68 -426.36 -3.28 -19.76 16 30 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.04 8.12 -2.39 -0.02 1.02 16 32 H 0.06 1.05 8.12 -2.38 -0.02 1.03 16 33 H 0.19 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.11 0.27 8.09 -2.39 -0.02 0.25 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.07 2.11 4.83 -2.39 -0.01 2.10 16 41 H 0.06 1.53 6.19 -2.39 -0.01 1.51 16 42 H 0.06 1.60 6.25 -2.38 -0.01 1.58 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.05 2.09 6.77 -2.39 -0.02 2.07 16 45 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.00 0.20 7.75 -2.39 -0.02 0.18 16 47 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 48 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 49 H 0.07 1.93 5.94 -2.38 -0.01 1.91 16 50 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -72.96 399.87 -1.32 -74.28 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.93 Total: 14.77 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 7.62 Total: -3.15 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -10.09 Total: -117.18 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.80 Total: -16.04 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.96 -1.32 -74.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506347.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.915 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds