Wall clock time and date at job start Tue Mar 31 2020 19:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35519 * 116.99840 * 2 1 4 4 C 1.39422 * 120.47663 * 180.02562 * 3 2 1 5 5 C 1.38179 * 118.47225 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.37953 * 179.97438 * 5 4 3 7 7 N 1.32490 * 119.24613 * 359.75662 * 5 4 3 8 8 C 1.32287 * 120.90190 * 0.50303 * 7 5 4 9 9 O 1.35457 * 119.16486 * 179.76308 * 8 7 5 10 10 C 1.42898 * 117.00168 * 179.72937 * 9 8 7 11 11 H 1.08997 * 110.87674 * 32.38787 * 10 9 8 12 12 C 1.55146 * 110.98820 * 268.54247 * 10 9 8 13 13 C 1.54314 * 103.01649 * 206.25399 * 12 10 9 14 14 N 1.47438 * 107.23567 * 22.28836 * 13 12 10 15 15 C 1.46899 * 111.00173 * 123.25913 * 14 13 12 16 16 H 1.09002 * 109.46684 * 301.56212 * 15 14 13 17 17 C 1.52997 * 109.47268 * 181.56490 * 15 14 13 18 18 C 1.52998 * 109.47600 * 61.56016 * 15 14 13 19 19 C 1.52997 * 109.47143 * 185.24079 * 18 15 14 20 20 C 1.50708 * 109.46875 * 177.36396 * 19 18 15 21 21 H 1.07993 * 120.00230 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99895 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99872 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00172 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46817 * 59.99953 * 24 22 20 26 26 H 1.48504 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47144 * 300.00169 * 24 22 20 28 28 C 1.47845 * 108.56677 * 0.98553 * 14 13 12 29 29 N 1.32310 * 121.67257 * 359.48292 * 8 7 5 30 30 H 1.08996 * 109.47599 * 300.00351 * 1 2 3 31 31 H 1.09004 * 109.47024 * 60.00036 * 1 2 3 32 32 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.76523 * 359.95918 * 4 3 2 34 34 H 1.09003 * 109.47023 * 90.00308 * 6 5 4 35 35 H 1.09007 * 109.47217 * 210.00242 * 6 5 4 36 36 H 1.08998 * 109.47459 * 330.00116 * 6 5 4 37 37 H 1.09001 * 110.70614 * 87.87274 * 12 10 9 38 38 H 1.09002 * 110.70748 * 324.63977 * 12 10 9 39 39 H 1.09003 * 109.88988 * 262.87302 * 13 12 10 40 40 H 1.09002 * 109.88743 * 141.69530 * 13 12 10 41 41 H 1.08993 * 109.47445 * 179.97438 * 17 15 14 42 42 H 1.09002 * 109.47041 * 299.99504 * 17 15 14 43 43 H 1.09004 * 109.47281 * 59.99263 * 17 15 14 44 44 H 1.09002 * 109.46978 * 305.23985 * 18 15 14 45 45 H 1.08995 * 109.46715 * 65.23909 * 18 15 14 46 46 H 1.09006 * 109.46862 * 297.36080 * 19 18 15 47 47 H 1.08995 * 109.47623 * 57.36479 * 19 18 15 48 48 H 0.97003 * 120.00179 * 180.02562 * 23 22 20 49 49 H 1.08995 * 110.37138 * 94.73418 * 28 14 13 50 50 H 1.09006 * 110.37287 * 217.07681 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2921 -0.0005 5 6 4.0197 2.5445 -0.0011 6 6 5.5200 2.6859 -0.0011 7 7 3.2454 3.6196 -0.0059 8 6 1.9273 3.5076 -0.0003 9 8 1.1694 4.6303 -0.0007 10 6 -0.2488 4.4557 -0.0005 11 1 -0.5292 3.5549 0.5454 12 6 -0.8050 4.4237 -1.4485 13 6 -2.2588 4.9106 -1.2733 14 7 -2.3146 5.6753 -0.0140 15 6 -2.8147 7.0368 -0.2465 16 1 -2.1673 7.5444 -0.9616 17 6 -2.8215 7.8101 1.0737 18 6 -4.2374 6.9692 -0.8052 19 6 -4.7097 8.3780 -1.1697 20 6 -6.0858 8.3044 -1.7799 21 1 -6.5747 7.3484 -1.8958 22 6 -6.7210 9.4575 -2.1893 23 7 -6.1258 10.6218 -2.0478 24 14 -8.4262 9.3662 -2.9463 25 1 -9.3695 8.7643 -1.9700 26 1 -8.8852 10.7338 -3.2988 27 1 -8.3798 8.5280 -4.1712 28 6 -0.9613 5.7022 0.5808 29 7 1.3304 2.3268 0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0436 0.3993 -0.0003 34 1 5.8818 2.7196 -1.0288 35 1 5.7982 3.6063 0.5124 36 1 5.9653 1.8342 0.5131 37 1 -0.7836 3.4095 -1.8473 38 1 -0.2457 5.1035 -2.0913 39 1 -2.9322 4.0553 -1.2180 40 1 -2.5384 5.5519 -2.1092 41 1 -3.1922 8.8204 0.9011 42 1 -3.4689 7.3024 1.7887 43 1 -1.8079 7.8583 1.4718 44 1 -4.2486 6.3405 -1.6957 45 1 -4.9033 6.5459 -0.0533 46 1 -4.7434 8.9938 -0.2709 47 1 -4.0175 8.8193 -1.8867 48 1 -6.5728 11.4332 -2.3355 49 1 -0.4359 6.6110 0.2873 50 1 -1.0227 5.6322 1.6669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172506348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:28 Heat of formation + Delta-G solvation = -23.188392 kcal Electronic energy + Delta-G solvation = -28882.615759 eV Core-core repulsion = 24910.989595 eV Total energy + Delta-G solvation = -3971.626164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75470 -39.90738 -38.96660 -37.85666 -34.71041 -34.17344 -32.68358 -32.00391 -30.11697 -29.35452 -28.85183 -27.84278 -27.29270 -25.15153 -24.21145 -23.25201 -22.33230 -21.23557 -20.77821 -19.42283 -19.05660 -18.43487 -17.24924 -16.84797 -16.49993 -16.03375 -15.77063 -15.60782 -15.31582 -14.89620 -14.52464 -14.26820 -14.16229 -13.80390 -13.70283 -13.58205 -13.41732 -12.91883 -12.77322 -12.47503 -12.36278 -12.30754 -12.02873 -11.90432 -11.75316 -11.40618 -11.34303 -11.08132 -11.03875 -10.87857 -10.71900 -10.64295 -10.54164 -10.36275 -10.25469 -9.68825 -9.62770 -9.30310 -9.09440 -9.02114 -8.31689 -8.14577 -5.98077 -4.00014 0.64016 0.80078 2.15244 2.46912 3.34263 3.36859 3.38565 3.41100 3.54292 3.98514 4.24393 4.36864 4.46145 4.52137 4.54566 4.75699 4.80818 4.85607 4.90075 4.93294 5.10617 5.16896 5.19592 5.25344 5.31915 5.37483 5.46101 5.51172 5.56892 5.64118 5.68323 5.77875 5.87407 5.92529 5.93816 6.09823 6.29932 6.39534 6.41401 6.50257 6.63078 6.71782 6.75190 6.95022 7.07885 7.21452 7.38607 7.70438 7.78190 7.85737 8.02312 8.45600 9.06878 9.63643 11.13178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002012 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.839451 B =13915.485516 C =14599.471654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.299 6.299 3 C 0.401 3.599 4 C -0.289 4.289 5 C 0.237 3.763 6 C -0.104 4.104 7 N -0.547 5.547 8 C 0.549 3.451 9 O -0.274 6.274 10 C 0.085 3.915 11 H 0.104 0.896 12 C -0.157 4.157 13 C 0.044 3.956 14 N -0.518 5.518 15 C 0.076 3.924 16 H 0.039 0.961 17 C -0.143 4.143 18 C -0.101 4.101 19 C 0.023 3.977 20 C -0.519 4.519 21 H 0.054 0.946 22 C 0.056 3.944 23 N -0.896 5.896 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.051 3.949 29 N -0.623 5.623 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.055 0.945 46 H 0.020 0.980 47 H 0.012 0.988 48 H 0.260 0.740 49 H 0.060 0.940 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.677 -21.241 5.510 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.202 6.202 3 C 0.215 3.785 4 C -0.313 4.313 5 C 0.093 3.907 6 C -0.162 4.162 7 N -0.279 5.279 8 C 0.247 3.753 9 O -0.173 6.173 10 C 0.027 3.973 11 H 0.122 0.878 12 C -0.196 4.196 13 C -0.084 4.084 14 N -0.244 5.244 15 C -0.031 4.031 16 H 0.057 0.943 17 C -0.201 4.201 18 C -0.139 4.139 19 C -0.015 4.015 20 C -0.557 4.557 21 H 0.072 0.928 22 C -0.145 4.145 23 N -0.535 5.535 24 Si 0.719 3.281 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.077 4.077 29 N -0.370 5.370 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.039 0.961 47 H 0.030 0.970 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 20.813 -20.460 5.816 29.759 hybrid contribution -0.460 -0.353 -1.090 1.235 sum 20.353 -20.813 4.726 29.492 Atomic orbital electron populations 1.23015 0.76163 1.03644 1.03127 1.86255 1.23780 1.23741 1.86460 1.19752 0.89147 0.83907 0.85702 1.21543 0.92447 1.00545 1.16749 1.21343 0.96990 0.86145 0.86178 1.20809 0.86682 1.04513 1.04159 1.67499 1.02723 1.34023 1.23612 1.20242 0.85947 0.83251 0.85898 1.86144 1.20098 1.25380 1.85710 1.23753 0.74757 1.00986 0.97764 0.87761 1.23234 0.97512 1.02614 0.96240 1.22759 0.94502 0.98702 0.92399 1.63788 1.20307 1.16195 1.24131 1.22041 0.98034 0.86109 0.96934 0.94267 1.21887 1.00614 1.00971 0.96604 1.21728 0.92040 1.01050 0.99103 1.19127 0.95681 0.90084 0.96582 1.21213 1.01616 0.92837 1.40060 0.92800 1.25022 0.97873 0.95541 0.96070 1.69954 1.37995 0.97742 1.47835 0.86668 0.84706 0.76965 0.79715 1.20247 1.21332 1.20312 1.22992 0.88834 0.95674 1.00238 1.67607 1.42023 0.98809 1.28567 0.91742 0.91746 0.87981 0.82812 0.89132 0.89390 0.89597 0.90395 0.90585 0.90177 0.91146 0.90984 0.92160 0.93859 0.93302 0.92573 0.96146 0.96952 0.92997 0.92128 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.41 101.05 1.05 1.30 16 2 O -0.30 -2.75 10.49 -18.25 -0.19 -2.94 16 3 C 0.40 4.18 7.53 -16.71 -0.13 4.06 16 4 C -0.29 -2.48 9.80 -39.16 -0.38 -2.87 16 5 C 0.24 2.16 6.81 -82.33 -0.56 1.60 16 6 C -0.10 -0.52 10.21 36.01 0.37 -0.15 16 7 N -0.55 -6.84 10.40 -11.02 -0.11 -6.95 16 8 C 0.55 7.25 8.49 -91.29 -0.77 6.47 16 9 O -0.27 -3.79 10.00 -18.06 -0.18 -3.97 16 10 C 0.08 1.06 3.20 -24.59 -0.08 0.99 16 11 H 0.10 1.28 7.14 -51.93 -0.37 0.91 16 12 C -0.16 -1.93 6.68 -24.91 -0.17 -2.10 16 13 C 0.04 0.61 6.08 -2.84 -0.02 0.59 16 14 N -0.52 -7.80 5.03 -223.30 -1.12 -8.92 16 15 C 0.08 1.33 1.70 -67.72 -0.12 1.21 16 16 H 0.04 0.72 8.13 -51.93 -0.42 0.30 16 17 C -0.14 -2.36 8.80 37.16 0.33 -2.04 16 18 C -0.10 -2.10 4.59 -26.73 -0.12 -2.22 16 19 C 0.02 0.58 4.67 -27.88 -0.13 0.45 16 20 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 23 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 24 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.05 0.68 5.10 -2.30 -0.01 0.67 16 29 N -0.62 -7.40 7.68 -14.79 -0.11 -7.52 16 30 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.23 8.09 -51.93 -0.42 -0.19 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.06 6.49 -51.93 -0.34 0.72 16 41 H 0.07 1.30 6.63 -51.93 -0.34 0.96 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.62 6.94 -51.93 -0.36 0.26 16 44 H 0.05 1.00 6.47 -51.93 -0.34 0.66 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.02 0.55 6.70 -51.93 -0.35 0.20 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.06 0.85 7.51 -51.93 -0.39 0.46 16 50 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -32.35 402.25 -9.46 -41.81 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.36 Total: -2.49 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.15 Total: -5.58 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.61 Total: -49.68 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.37 Total: -6.91 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.35 -9.46 -41.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.621 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds