Wall clock time and date at job start Tue Mar 31 2020 19:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35519 * 116.99840 * 2 1 4 4 C 1.39422 * 120.47663 * 180.02562 * 3 2 1 5 5 C 1.38179 * 118.47225 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.37953 * 179.97438 * 5 4 3 7 7 N 1.32490 * 119.24613 * 359.75662 * 5 4 3 8 8 C 1.32287 * 120.90190 * 0.50303 * 7 5 4 9 9 O 1.35457 * 119.16486 * 179.76308 * 8 7 5 10 10 C 1.42898 * 117.00168 * 179.72937 * 9 8 7 11 11 H 1.08997 * 110.87674 * 32.38787 * 10 9 8 12 12 C 1.55146 * 110.98820 * 268.54247 * 10 9 8 13 13 C 1.54314 * 103.01649 * 206.25399 * 12 10 9 14 14 N 1.47438 * 107.23567 * 22.28836 * 13 12 10 15 15 C 1.46899 * 111.00173 * 123.25913 * 14 13 12 16 16 H 1.09002 * 109.46684 * 301.56212 * 15 14 13 17 17 C 1.52997 * 109.47268 * 181.56490 * 15 14 13 18 18 C 1.52998 * 109.47600 * 61.56016 * 15 14 13 19 19 C 1.52997 * 109.47143 * 185.24079 * 18 15 14 20 20 C 1.50708 * 109.46875 * 177.36396 * 19 18 15 21 21 H 1.07993 * 120.00230 * 0.02562 * 20 19 18 22 22 C 1.37873 * 119.99895 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99872 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00172 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46817 * 59.99953 * 24 22 20 26 26 H 1.48504 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47144 * 300.00169 * 24 22 20 28 28 C 1.47845 * 108.56677 * 0.98553 * 14 13 12 29 29 N 1.32310 * 121.67257 * 359.48292 * 8 7 5 30 30 H 1.08996 * 109.47599 * 300.00351 * 1 2 3 31 31 H 1.09004 * 109.47024 * 60.00036 * 1 2 3 32 32 H 1.09002 * 109.46955 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.76523 * 359.95918 * 4 3 2 34 34 H 1.09003 * 109.47023 * 90.00308 * 6 5 4 35 35 H 1.09007 * 109.47217 * 210.00242 * 6 5 4 36 36 H 1.08998 * 109.47459 * 330.00116 * 6 5 4 37 37 H 1.09001 * 110.70614 * 87.87274 * 12 10 9 38 38 H 1.09002 * 110.70748 * 324.63977 * 12 10 9 39 39 H 1.09003 * 109.88988 * 262.87302 * 13 12 10 40 40 H 1.09002 * 109.88743 * 141.69530 * 13 12 10 41 41 H 1.08993 * 109.47445 * 179.97438 * 17 15 14 42 42 H 1.09002 * 109.47041 * 299.99504 * 17 15 14 43 43 H 1.09004 * 109.47281 * 59.99263 * 17 15 14 44 44 H 1.09002 * 109.46978 * 305.23985 * 18 15 14 45 45 H 1.08995 * 109.46715 * 65.23909 * 18 15 14 46 46 H 1.09006 * 109.46862 * 297.36080 * 19 18 15 47 47 H 1.08995 * 109.47623 * 57.36479 * 19 18 15 48 48 H 0.97003 * 120.00179 * 180.02562 * 23 22 20 49 49 H 1.08995 * 110.37138 * 94.73418 * 28 14 13 50 50 H 1.09006 * 110.37287 * 217.07681 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4358 1.2921 -0.0005 5 6 4.0197 2.5445 -0.0011 6 6 5.5200 2.6859 -0.0011 7 7 3.2454 3.6196 -0.0059 8 6 1.9273 3.5076 -0.0003 9 8 1.1694 4.6303 -0.0007 10 6 -0.2488 4.4557 -0.0005 11 1 -0.5292 3.5549 0.5454 12 6 -0.8050 4.4237 -1.4485 13 6 -2.2588 4.9106 -1.2733 14 7 -2.3146 5.6753 -0.0140 15 6 -2.8147 7.0368 -0.2465 16 1 -2.1673 7.5444 -0.9616 17 6 -2.8215 7.8101 1.0737 18 6 -4.2374 6.9692 -0.8052 19 6 -4.7097 8.3780 -1.1697 20 6 -6.0858 8.3044 -1.7799 21 1 -6.5747 7.3484 -1.8958 22 6 -6.7210 9.4575 -2.1893 23 7 -6.1258 10.6218 -2.0478 24 14 -8.4262 9.3662 -2.9463 25 1 -9.3695 8.7643 -1.9700 26 1 -8.8852 10.7338 -3.2988 27 1 -8.3798 8.5280 -4.1712 28 6 -0.9613 5.7022 0.5808 29 7 1.3304 2.3268 0.0001 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0436 0.3993 -0.0003 34 1 5.8818 2.7196 -1.0288 35 1 5.7982 3.6063 0.5124 36 1 5.9653 1.8342 0.5131 37 1 -0.7836 3.4095 -1.8473 38 1 -0.2457 5.1035 -2.0913 39 1 -2.9322 4.0553 -1.2180 40 1 -2.5384 5.5519 -2.1092 41 1 -3.1922 8.8204 0.9011 42 1 -3.4689 7.3024 1.7887 43 1 -1.8079 7.8583 1.4718 44 1 -4.2486 6.3405 -1.6957 45 1 -4.9033 6.5459 -0.0533 46 1 -4.7434 8.9938 -0.2709 47 1 -4.0175 8.8193 -1.8867 48 1 -6.5728 11.4332 -2.3355 49 1 -0.4359 6.6110 0.2873 50 1 -1.0227 5.6322 1.6669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172506348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:26 Heat of formation + Delta-G solvation = -47.116603 kcal Electronic energy + Delta-G solvation = -28883.653364 eV Core-core repulsion = 24910.989595 eV Total energy + Delta-G solvation = -3972.663769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.54790 -40.93229 -39.80136 -38.86808 -36.30078 -34.94692 -34.54370 -32.83689 -31.72595 -30.05655 -29.86880 -29.26463 -27.84862 -26.95566 -25.12806 -24.34208 -23.55596 -22.60247 -21.91465 -20.73695 -20.00862 -19.34598 -18.52006 -17.99843 -17.62538 -17.27125 -16.60125 -16.48547 -16.43682 -16.32361 -15.68085 -15.62334 -15.06030 -14.96509 -14.86087 -14.45051 -14.39991 -14.16607 -13.96108 -13.57672 -13.55299 -13.15534 -13.13940 -12.97572 -12.95701 -12.84696 -12.57660 -12.53923 -12.36374 -12.27829 -12.08997 -11.93719 -11.82850 -11.64397 -11.45880 -11.28968 -11.13834 -11.03255 -10.52381 -10.50626 -9.84702 -9.40004 -8.19163 -6.29783 -0.10965 0.02897 1.26763 1.39507 1.42548 1.50417 1.80606 2.40925 2.57980 2.73904 2.93869 3.13731 3.33654 3.46535 3.51961 3.74241 3.90906 4.06291 4.08390 4.12830 4.15401 4.24207 4.33557 4.34866 4.38085 4.45710 4.52468 4.65177 4.69438 4.76404 4.77718 4.80390 4.83229 4.83856 4.91774 4.94784 4.97193 5.03584 5.07949 5.21714 5.31113 5.35732 5.52268 5.62756 5.70049 5.76867 5.86803 5.93633 6.00950 6.16956 6.27941 6.86935 6.96636 7.38895 8.92282 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002012 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.839451 B =13915.485516 C =14599.471654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.384 3.616 4 C -0.279 4.279 5 C 0.228 3.772 6 C -0.101 4.101 7 N -0.573 5.573 8 C 0.529 3.471 9 O -0.290 6.290 10 C 0.095 3.905 11 H 0.109 0.891 12 C -0.147 4.147 13 C 0.043 3.957 14 N -0.518 5.518 15 C 0.086 3.914 16 H 0.026 0.974 17 C -0.138 4.138 18 C -0.086 4.086 19 C 0.029 3.971 20 C -0.542 4.542 21 H 0.058 0.942 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.964 3.036 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.268 1.268 28 C 0.052 3.948 29 N -0.630 5.630 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.130 0.870 33 H 0.186 0.814 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.001 0.999 47 H -0.015 1.015 48 H 0.263 0.737 49 H 0.053 0.947 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.361 -23.769 5.665 33.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.204 6.204 3 C 0.198 3.802 4 C -0.302 4.302 5 C 0.087 3.913 6 C -0.158 4.158 7 N -0.306 5.306 8 C 0.226 3.774 9 O -0.191 6.191 10 C 0.038 3.962 11 H 0.127 0.873 12 C -0.185 4.185 13 C -0.084 4.084 14 N -0.244 5.244 15 C -0.023 4.023 16 H 0.044 0.956 17 C -0.195 4.195 18 C -0.124 4.124 19 C -0.009 4.009 20 C -0.580 4.580 21 H 0.077 0.923 22 C -0.199 4.199 23 N -0.573 5.573 24 Si 0.788 3.212 25 H -0.191 1.191 26 H -0.209 1.209 27 H -0.193 1.193 28 C -0.076 4.076 29 N -0.377 5.377 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.203 0.797 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.019 0.981 47 H 0.003 0.997 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.517 -23.030 5.976 32.079 hybrid contribution -0.579 0.364 -1.131 1.322 sum 20.939 -22.666 4.844 31.235 Atomic orbital electron populations 1.23188 0.75172 1.05332 1.02553 1.86266 1.24789 1.23016 1.86348 1.20136 0.90068 0.83881 0.86067 1.21932 0.92011 1.01510 1.14700 1.22064 0.98518 0.85647 0.85119 1.20968 0.83870 1.05631 1.05338 1.67528 1.02741 1.35861 1.24466 1.20344 0.86307 0.83376 0.87368 1.86091 1.20346 1.26391 1.86263 1.23593 0.74654 1.00450 0.97547 0.87299 1.23128 0.96222 1.02965 0.96223 1.22795 0.95770 0.98579 0.91284 1.63750 1.21542 1.14326 1.24733 1.21778 0.95839 0.87708 0.96929 0.95599 1.21811 1.02033 0.99460 0.96213 1.21476 0.94013 0.97696 0.99255 1.18996 0.94491 0.92607 0.94779 1.21662 1.02808 0.93210 1.40316 0.92340 1.25976 1.02355 0.95092 0.96492 1.70093 1.39901 0.98501 1.48779 0.85522 0.79320 0.77241 0.79098 1.19143 1.20872 1.19253 1.23006 0.87842 0.95949 1.00829 1.67536 1.42432 0.98878 1.28903 0.92276 0.92324 0.85211 0.79690 0.87757 0.89807 0.86678 0.89128 0.91524 0.88950 0.92676 0.93230 0.91693 0.91556 0.93119 0.92669 0.98086 0.99703 0.92833 0.92866 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.41 113.37 1.18 1.58 16 2 O -0.30 -5.01 10.49 -88.22 -0.93 -5.93 16 3 C 0.38 7.47 7.53 84.84 0.64 8.11 16 4 C -0.28 -4.17 9.80 22.54 0.22 -3.95 16 5 C 0.23 3.79 6.81 42.45 0.29 4.08 16 6 C -0.10 -0.76 10.21 71.24 0.73 -0.03 16 7 N -0.57 -14.06 10.40 -301.74 -3.14 -17.19 16 8 C 0.53 13.84 8.49 180.58 1.53 15.37 16 9 O -0.29 -8.06 10.00 -87.55 -0.88 -8.93 16 10 C 0.09 2.34 3.20 31.98 0.10 2.44 16 11 H 0.11 2.58 7.14 -2.39 -0.02 2.57 16 12 C -0.15 -3.55 6.68 31.78 0.21 -3.34 16 13 C 0.04 1.17 6.08 86.65 0.53 1.70 16 14 N -0.52 -15.35 5.03 -860.40 -4.33 -19.68 16 15 C 0.09 3.03 1.70 44.91 0.08 3.11 16 16 H 0.03 0.99 8.13 -2.39 -0.02 0.97 16 17 C -0.14 -4.58 8.80 71.98 0.63 -3.94 16 18 C -0.09 -3.65 4.59 30.59 0.14 -3.51 16 19 C 0.03 1.54 4.67 29.85 0.14 1.68 16 20 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 21 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 22 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 23 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 24 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 C 0.05 1.35 5.10 86.77 0.44 1.79 16 29 N -0.63 -14.54 7.68 -426.36 -3.28 -17.82 16 30 H 0.06 0.80 8.12 -2.39 -0.02 0.78 16 31 H 0.06 0.80 8.12 -2.38 -0.02 0.78 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.11 0.19 8.09 -2.39 -0.02 0.17 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.05 1.67 6.49 -2.39 -0.02 1.66 16 41 H 0.05 1.86 6.63 -2.39 -0.02 1.84 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 1.87 6.94 -2.39 -0.02 1.86 16 44 H 0.05 2.09 6.47 -2.39 -0.02 2.08 16 45 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.00 0.05 6.70 -2.38 -0.02 0.03 16 47 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.26 15.25 8.31 -92.71 -0.77 14.47 16 49 H 0.05 1.49 7.51 -2.39 -0.02 1.47 16 50 H 0.10 2.39 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -71.11 402.25 -1.75 -72.86 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.92 Total: 12.60 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 7.56 Total: -5.60 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -10.45 Total: -111.82 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.80 Total: -14.86 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.11 -1.75 -72.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172506348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.746 kcal (2) G-P(sol) polarization free energy of solvation -71.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds