Wall clock time and date at job start Tue Mar 31 2020 19:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38363 * 119.40444 * 2 1 4 4 C 1.38331 * 119.45571 * 180.25216 * 3 2 1 5 5 C 1.50706 * 120.82653 * 179.75116 * 4 3 2 6 6 C 1.39993 * 118.35203 * 359.47727 * 4 3 2 7 7 C 1.47524 * 120.59799 * 180.23247 * 6 4 3 8 8 O 1.21590 * 120.00078 * 89.99493 * 7 6 4 9 9 N 1.34775 * 119.99813 * 269.99934 * 7 6 4 10 10 C 1.46504 * 119.99794 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47221 * 35.00141 * 10 9 7 12 12 C 1.52999 * 109.47097 * 274.99548 * 10 9 7 13 13 C 1.53004 * 109.47006 * 154.99646 * 10 9 7 14 14 C 1.53002 * 109.47331 * 294.99961 * 13 10 9 15 15 C 1.52990 * 109.47404 * 179.97438 * 14 13 10 16 16 C 1.52993 * 109.47457 * 179.97438 * 15 14 13 17 17 N 1.46508 * 109.47553 * 180.02562 * 16 15 14 18 18 C 1.36931 * 120.00265 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00202 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00097 * 180.02562 * 18 17 16 21 21 N 1.31614 * 119.99822 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99963 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46699 * 90.00244 * 22 20 18 24 24 H 1.48499 * 109.47349 * 210.00343 * 22 20 18 25 25 H 1.48500 * 109.47246 * 330.00483 * 22 20 18 26 26 C 1.40279 * 118.80147 * 0.24648 * 6 4 3 27 27 O 1.35426 * 119.79702 * 179.97438 * 26 6 4 28 28 N 1.31872 * 119.41173 * 179.71370 * 2 1 3 29 29 H 1.08997 * 109.47725 * 270.28159 * 1 2 3 30 30 H 1.09003 * 109.47299 * 30.28600 * 1 2 3 31 31 H 1.08999 * 109.46606 * 150.27881 * 1 2 3 32 32 H 1.08001 * 120.27137 * 359.97385 * 3 2 1 33 33 H 1.08999 * 109.47015 * 269.72046 * 5 4 3 34 34 H 1.09000 * 109.46646 * 29.71199 * 5 4 3 35 35 H 1.09000 * 109.47248 * 149.71916 * 5 4 3 36 36 H 0.97002 * 120.00026 * 359.97438 * 9 7 6 37 37 H 1.08995 * 109.47199 * 180.02562 * 12 10 9 38 38 H 1.09003 * 109.46889 * 300.00186 * 12 10 9 39 39 H 1.08997 * 109.46788 * 59.99755 * 12 10 9 40 40 H 1.09003 * 109.47091 * 55.00065 * 13 10 9 41 41 H 1.08996 * 109.47188 * 174.99672 * 13 10 9 42 42 H 1.09001 * 109.46621 * 299.99973 * 14 13 10 43 43 H 1.09005 * 109.46943 * 59.99760 * 14 13 10 44 44 H 1.09003 * 109.47187 * 300.00208 * 15 14 13 45 45 H 1.09005 * 109.47133 * 60.00039 * 15 14 13 46 46 H 1.09003 * 109.47147 * 300.00300 * 16 15 14 47 47 H 1.08996 * 109.47140 * 59.99912 * 16 15 14 48 48 H 0.96996 * 119.99623 * 359.97438 * 17 16 15 49 49 H 0.97009 * 119.99673 * 180.02562 * 21 20 18 50 50 H 0.96701 * 113.99476 * 90.00397 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5696 1.2066 -0.0053 5 6 4.3407 2.5015 -0.0111 6 6 4.2356 -0.0247 0.0007 7 6 5.7097 -0.0812 0.0006 8 8 6.3175 -0.0991 1.0536 9 7 6.3828 -0.1129 -1.1666 10 6 7.8467 -0.1695 -1.1667 11 1 8.1872 -0.7685 -0.3221 12 6 8.4119 1.2473 -1.0480 13 6 8.3324 -0.8048 -2.4711 14 6 7.8710 -2.2623 -2.5314 15 6 8.3561 -2.8974 -3.8360 16 6 7.8952 -4.3550 -3.8959 17 7 8.3603 -4.9634 -5.1450 18 6 8.0652 -6.2717 -5.4207 19 1 7.4899 -6.8555 -4.7173 20 6 8.5063 -6.8482 -6.6039 21 7 8.2222 -8.1057 -6.8691 22 14 9.5019 -5.8390 -7.8203 23 1 10.9474 -5.9715 -7.5071 24 1 9.2466 -6.3312 -9.1979 25 1 9.1031 -4.4118 -7.7227 26 6 3.4758 -1.2040 0.0066 27 8 4.0992 -2.4062 0.0119 28 7 2.1546 -1.1487 0.0057 29 1 -0.3634 0.0051 1.0276 30 1 -0.3634 0.8874 -0.5183 31 1 -0.3632 -0.8925 -0.5095 32 1 1.6410 2.1376 -0.0004 33 1 4.5270 2.8088 -1.0401 34 1 3.7616 3.2714 0.4988 35 1 5.2911 2.3607 0.5038 36 1 5.8978 -0.0989 -2.0066 37 1 9.5010 1.2052 -1.0486 38 1 8.0713 1.8462 -1.8927 39 1 8.0658 1.6998 -0.1188 40 1 7.9186 -0.2573 -3.3180 41 1 9.4210 -0.7664 -2.5107 42 1 8.2849 -2.8097 -1.6845 43 1 6.7823 -2.3007 -2.4918 44 1 7.9419 -2.3498 -4.6826 45 1 9.4447 -2.8590 -3.8759 46 1 8.3098 -4.9023 -3.0493 47 1 6.8067 -4.3938 -3.8557 48 1 8.8766 -4.4390 -5.7769 49 1 8.5308 -8.5087 -7.6958 50 1 4.2805 -2.7512 0.8969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174580233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:51 Heat of formation + Delta-G solvation = -83.668883 kcal Electronic energy + Delta-G solvation = -28673.364499 eV Core-core repulsion = 24699.115705 eV Total energy + Delta-G solvation = -3974.248795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.07157 -40.46768 -38.45904 -38.11616 -36.96831 -35.30994 -34.78640 -33.29387 -32.81452 -31.83511 -29.36468 -29.02851 -28.44861 -25.84803 -24.71431 -23.63189 -22.96822 -22.20389 -21.86007 -21.51762 -19.65166 -19.53702 -18.89609 -18.27149 -17.56724 -16.72520 -16.65477 -16.34793 -15.98879 -15.83412 -15.51334 -15.17000 -14.90274 -14.83946 -14.69969 -14.33600 -14.20819 -14.18623 -14.02849 -13.93990 -13.53142 -13.27157 -13.14624 -12.98592 -12.97224 -12.93742 -12.85157 -12.64728 -12.49823 -12.30289 -12.09917 -11.90918 -11.79909 -11.57466 -11.46829 -11.33912 -10.99785 -10.64849 -10.49378 -10.15807 -9.88373 -9.34127 -8.05907 -5.40697 -0.31699 0.02454 1.35760 1.37989 1.41214 1.48714 2.07536 2.28037 2.46727 2.62937 3.24732 3.38786 3.46260 3.53629 3.63467 3.88817 3.94793 4.01260 4.05389 4.18182 4.27521 4.32273 4.36345 4.49460 4.55270 4.57580 4.61305 4.65383 4.73493 4.78657 4.84801 4.89784 4.93563 4.96108 4.98200 5.00856 5.07628 5.11062 5.17352 5.22246 5.31831 5.38224 5.47551 5.50067 5.52493 5.71373 6.18267 6.37718 6.39054 6.80567 7.04564 7.06211 7.79957 8.01660 9.15883 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.002368 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.910070 B =11821.813624 C =13293.030043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.177 4.177 4 C 0.008 3.992 5 C -0.121 4.121 6 C -0.223 4.223 7 C 0.585 3.415 8 O -0.572 6.572 9 N -0.699 5.699 10 C 0.140 3.860 11 H 0.069 0.931 12 C -0.156 4.156 13 C -0.116 4.116 14 C -0.108 4.108 15 C -0.115 4.115 16 C 0.150 3.850 17 N -0.760 5.760 18 C -0.244 4.244 19 H 0.049 0.951 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.248 1.248 26 C 0.337 3.663 27 O -0.492 6.492 28 N -0.537 5.537 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.184 0.816 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.409 0.591 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.016 0.984 47 H 0.014 0.986 48 H 0.368 0.632 49 H 0.259 0.741 50 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.117 32.064 16.072 37.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.021 3.979 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.177 4.177 6 C -0.229 4.229 7 C 0.370 3.630 8 O -0.452 6.452 9 N -0.349 5.349 10 C 0.037 3.963 11 H 0.087 0.913 12 C -0.214 4.214 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.153 4.153 16 C 0.024 3.976 17 N -0.406 5.406 18 C -0.375 4.375 19 H 0.067 0.933 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.173 1.173 26 C 0.158 3.842 27 O -0.302 6.302 28 N -0.258 5.258 29 H 0.114 0.886 30 H 0.127 0.873 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.077 0.923 36 H 0.245 0.755 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.032 0.968 48 H 0.202 0.798 49 H 0.068 0.932 50 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -11.182 31.086 16.272 36.826 hybrid contribution 0.795 -0.299 -0.543 1.009 sum -10.387 30.787 15.729 36.099 Atomic orbital electron populations 1.20935 0.85871 1.04927 1.04604 1.21879 0.98608 0.86903 0.90499 1.22180 0.93149 1.00600 1.03688 1.20618 0.94532 0.94079 0.90750 1.20999 0.99579 0.92480 1.04625 1.20877 0.94285 0.94884 1.12903 1.17868 0.86339 0.74798 0.83982 1.90788 1.70167 1.51735 1.32528 1.46087 1.07804 1.72906 1.08148 1.21098 0.78482 0.97741 0.99011 0.91319 1.22110 1.02034 0.95131 1.02096 1.21860 1.02818 0.94298 0.96357 1.21427 1.00742 0.96062 0.96399 1.21652 1.01436 0.93424 0.98741 1.20825 0.96170 0.93564 0.87005 1.42732 1.66376 1.09824 1.21643 1.19059 1.27793 0.87880 1.02750 0.93275 1.25649 1.02639 0.97332 1.00318 1.69911 1.52701 1.14024 1.26901 0.85274 0.78704 0.79261 0.77726 1.20059 1.21941 1.17261 1.19220 0.86813 0.84658 0.93521 1.84685 1.76769 1.33269 1.35466 1.67094 1.09210 1.32288 1.17171 0.88577 0.87257 0.91117 0.79867 0.88078 0.87615 0.92333 0.75514 0.90182 0.90826 0.93560 0.89646 0.88715 0.92603 0.92556 0.91244 0.91110 0.96550 0.96803 0.79845 0.93182 0.72220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.16 71.24 0.72 -0.20 16 2 C 0.16 2.50 6.78 42.58 0.29 2.78 16 3 C -0.18 -2.00 9.41 22.32 0.21 -1.79 16 4 C 0.01 0.12 5.95 -19.41 -0.12 0.00 16 5 C -0.12 -1.11 9.69 71.24 0.69 -0.42 16 6 C -0.22 -4.67 5.66 -19.91 -0.11 -4.78 16 7 C 0.58 13.35 5.39 86.69 0.47 13.81 16 8 O -0.57 -16.96 16.77 -4.00 -0.07 -17.03 16 9 N -0.70 -12.76 4.53 -445.70 -2.02 -14.78 16 10 C 0.14 2.43 2.57 44.99 0.12 2.54 16 11 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 12 C -0.16 -2.11 9.48 71.98 0.68 -1.43 16 13 C -0.12 -1.84 4.75 30.60 0.15 -1.70 16 14 C -0.11 -2.49 5.10 30.59 0.16 -2.34 16 15 C -0.11 -3.27 5.33 30.59 0.16 -3.10 16 16 C 0.15 6.11 6.26 86.38 0.54 6.65 16 17 N -0.76 -37.58 5.41 -343.45 -1.86 -39.44 16 18 C -0.24 -14.77 10.47 84.03 0.88 -13.89 16 19 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 21 N -0.99 -65.21 13.97 21.65 0.30 -64.91 16 22 Si 0.96 46.31 27.74 68.60 1.90 48.21 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 26 C 0.34 8.14 7.77 85.13 0.66 8.80 16 27 O -0.49 -12.37 13.01 -87.21 -1.14 -13.50 16 28 N -0.54 -12.50 10.28 -296.06 -3.04 -15.54 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.11 0.30 8.07 -2.39 -0.02 0.28 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.45 8.10 -2.39 -0.02 0.43 16 35 H 0.06 0.79 7.19 -2.39 -0.02 0.77 16 36 H 0.41 6.36 8.59 -92.71 -0.80 5.56 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.40 7.75 -2.38 -0.02 1.38 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 48 H 0.37 16.86 5.53 -92.71 -0.51 16.35 16 49 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 50 H 0.42 7.44 9.06 -74.06 -0.67 6.77 16 Total: -1.00 -84.73 414.85 -1.03 -85.76 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -1.08 Total: 29.97 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.96 Total: 1.26 kcal Atomic # 7 Polarization: -128.05 SS G_CDS: -6.62 Total: -134.67 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.20 Total: -30.53 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -84.73 -1.03 -85.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174580233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.088 kcal (2) G-P(sol) polarization free energy of solvation -84.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds