Wall clock time and date at job start Tue Mar 31 2020 19:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38358 * 119.40962 * 2 1 4 4 C 1.38331 * 119.46324 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.82877 * 180.02562 * 4 3 2 6 6 C 1.39989 * 118.34585 * 0.02562 * 4 3 2 7 7 C 1.47530 * 120.59784 * 180.02562 * 6 4 3 8 8 O 1.21588 * 119.99970 * 269.97922 * 7 6 4 9 9 N 1.34778 * 119.99380 * 89.97901 * 7 6 4 10 10 C 1.46499 * 119.99557 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47453 * 324.99459 * 10 9 7 12 12 C 1.53003 * 109.47423 * 84.99613 * 10 9 7 13 13 C 1.53005 * 109.46913 * 204.99743 * 10 9 7 14 14 C 1.52997 * 109.47110 * 64.99856 * 13 10 9 15 15 C 1.52996 * 109.47208 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47208 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47278 * 180.02562 * 16 15 14 18 18 C 1.36930 * 120.00320 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00300 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99700 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99786 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46907 * 89.99770 * 22 20 18 24 24 H 1.48503 * 109.47310 * 209.99694 * 22 20 18 25 25 H 1.48493 * 109.47422 * 329.99938 * 22 20 18 26 26 C 1.40282 * 118.81087 * 359.97438 * 6 4 3 27 27 O 1.35428 * 119.80276 * 180.27787 * 26 6 4 28 28 N 1.31878 * 119.40658 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.47168 * 270.01826 * 1 2 3 30 30 H 1.08996 * 109.46833 * 30.02397 * 1 2 3 31 31 H 1.09009 * 109.46602 * 150.01731 * 1 2 3 32 32 H 1.08004 * 120.26764 * 359.95889 * 3 2 1 33 33 H 1.09002 * 109.47634 * 90.00043 * 5 4 3 34 34 H 1.08997 * 109.47098 * 210.00305 * 5 4 3 35 35 H 1.09002 * 109.46946 * 330.00034 * 5 4 3 36 36 H 0.96999 * 120.00349 * 359.97438 * 9 7 6 37 37 H 1.09008 * 109.46745 * 59.99816 * 12 10 9 38 38 H 1.08997 * 109.46936 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47327 * 299.99993 * 12 10 9 40 40 H 1.09004 * 109.46634 * 184.99975 * 13 10 9 41 41 H 1.08993 * 109.46975 * 304.99536 * 13 10 9 42 42 H 1.08994 * 109.47475 * 300.00183 * 14 13 10 43 43 H 1.09004 * 109.47072 * 60.00133 * 14 13 10 44 44 H 1.09004 * 109.47442 * 300.00000 * 15 14 13 45 45 H 1.09000 * 109.47105 * 59.99743 * 15 14 13 46 46 H 1.08994 * 109.47475 * 300.00366 * 16 15 14 47 47 H 1.09004 * 109.47072 * 60.00315 * 16 15 14 48 48 H 0.97004 * 119.99809 * 359.97438 * 17 16 15 49 49 H 0.97007 * 119.99391 * 180.02562 * 21 20 18 50 50 H 0.96695 * 113.99993 * 269.72528 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2355 -0.0248 0.0005 7 6 5.7098 -0.0814 0.0016 8 8 6.3180 -0.1047 -1.0509 9 7 6.3821 -0.1074 1.1694 10 6 7.8461 -0.1630 1.1706 11 1 8.1875 -0.7656 0.3290 12 6 8.4104 1.2536 1.0457 13 6 8.3315 -0.7919 2.4782 14 6 7.8709 -2.2494 2.5450 15 6 8.3568 -2.8785 3.8522 16 6 7.8957 -4.3358 3.9192 17 7 8.3605 -4.9380 5.1713 18 6 8.0661 -6.2453 5.4530 19 1 7.4909 -6.8323 4.7523 20 6 8.5069 -6.8160 6.6391 21 7 8.2234 -8.0725 6.9100 22 14 9.5023 -5.8009 7.8506 23 1 8.5842 -5.1287 8.8049 24 1 10.4286 -6.6895 8.5974 25 1 10.2855 -4.7774 7.1129 26 6 3.4758 -1.2042 0.0005 27 8 4.0992 -2.4064 0.0062 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6411 2.1376 -0.0007 33 1 4.5264 2.8133 1.0289 34 1 5.2915 2.3582 -0.5124 35 1 3.7622 3.2690 -0.5128 36 1 5.8968 -0.0885 2.0091 37 1 8.0690 1.8563 1.8874 38 1 9.4996 1.2122 1.0470 39 1 8.0647 1.7017 0.1141 40 1 9.4201 -0.7526 2.5181 41 1 7.9168 -0.2408 3.3223 42 1 6.7824 -2.2887 2.5050 43 1 8.2856 -2.8005 1.7008 44 1 9.4454 -2.8393 3.8918 45 1 7.9425 -2.3275 4.6966 46 1 6.8072 -4.3747 3.8799 47 1 8.3097 -4.8870 3.0749 48 1 8.8774 -4.4108 5.8004 49 1 8.5312 -8.4712 7.7390 50 1 4.2801 -2.7598 -0.8755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174580234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:56 Heat of formation + Delta-G solvation = -53.952424 kcal Electronic energy + Delta-G solvation = -28672.137203 eV Core-core repulsion = 24699.177010 eV Total energy + Delta-G solvation = -3972.960192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34874 -39.66062 -37.69013 -37.06052 -35.41020 -34.66376 -33.27465 -32.25707 -31.55228 -30.61308 -28.69247 -27.96579 -27.76099 -24.42087 -23.81347 -22.53895 -21.76102 -21.04085 -20.86181 -20.70162 -18.76748 -18.14028 -17.59934 -17.44486 -16.72764 -15.95612 -15.31999 -15.08516 -14.84389 -14.67022 -14.47166 -14.19134 -14.05799 -13.81020 -13.63658 -13.53840 -13.44273 -13.13482 -13.04147 -12.84037 -12.69565 -12.53093 -12.36726 -12.29674 -11.98635 -11.91086 -11.66220 -11.45280 -11.17513 -10.85261 -10.82745 -10.55454 -10.36890 -10.31302 -10.07104 -10.00964 -9.74142 -9.54690 -9.33334 -9.22437 -8.84522 -7.17589 -5.72322 -3.07231 0.35926 0.66564 2.22758 2.81981 2.93880 3.31627 3.39895 3.42528 3.47279 4.01440 4.05344 4.29812 4.49797 4.53956 4.62955 4.72714 4.81125 4.85232 4.91497 4.93131 5.01707 5.12868 5.16371 5.17890 5.30510 5.32986 5.35546 5.49684 5.51629 5.55842 5.56663 5.58559 5.65993 5.67448 5.79774 5.86133 6.00772 6.02963 6.10284 6.14951 6.22746 6.30479 6.41491 6.83456 6.86975 7.08961 7.17704 7.48000 7.87094 8.05270 8.47137 9.26683 9.99129 10.19657 11.46369 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.002368 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.386275 B =11822.031382 C =13293.016679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.171 3.829 3 C -0.189 4.189 4 C 0.011 3.989 5 C -0.124 4.124 6 C -0.207 4.207 7 C 0.581 3.419 8 O -0.534 6.534 9 N -0.708 5.708 10 C 0.140 3.860 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.127 4.127 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.156 3.844 17 N -0.758 5.758 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.001 3.999 21 N -0.936 5.936 22 Si 0.886 3.114 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.360 3.640 27 O -0.472 6.472 28 N -0.505 5.505 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.402 0.598 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 27.723 -17.165 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.033 3.967 3 C -0.209 4.209 4 C 0.003 3.997 5 C -0.181 4.181 6 C -0.214 4.214 7 C 0.365 3.635 8 O -0.411 6.411 9 N -0.359 5.359 10 C 0.036 3.964 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.165 4.165 14 C -0.153 4.153 15 C -0.167 4.167 16 C 0.029 3.971 17 N -0.404 5.404 18 C -0.372 4.372 19 H 0.107 0.893 20 C -0.195 4.195 21 N -0.584 5.584 22 Si 0.717 3.283 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.180 3.820 27 O -0.280 6.280 28 N -0.225 5.225 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.237 0.763 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -11.357 26.702 -17.350 33.809 hybrid contribution 0.984 1.085 0.956 1.749 sum -10.373 27.788 -16.394 33.890 Atomic orbital electron populations 1.20825 0.88048 1.03968 1.03736 1.21225 0.97097 0.87030 0.91323 1.21778 0.93604 0.99664 1.05855 1.20234 0.93705 0.94074 0.91713 1.20942 1.00432 0.93175 1.03534 1.20867 0.94901 0.94167 1.11478 1.17738 0.85942 0.75586 0.84201 1.90817 1.69307 1.49730 1.31259 1.46101 1.07564 1.73911 1.08285 1.21107 0.78692 0.96891 0.99734 0.89114 1.22183 1.01412 0.96440 1.02096 1.21941 1.01929 0.96697 0.95904 1.21515 1.01336 0.94148 0.98315 1.21769 1.00856 0.97187 0.96857 1.20628 0.96899 0.90403 0.89152 1.42744 1.66032 1.11591 1.20019 1.19100 1.28529 0.86337 1.03237 0.89257 1.24692 1.00848 0.95975 0.97939 1.69713 1.51044 1.11885 1.25776 0.86509 0.80362 0.79647 0.81805 1.21126 1.21739 1.20377 1.19050 0.86351 0.84595 0.91990 1.84739 1.76481 1.32395 1.34372 1.67099 1.09157 1.30391 1.15827 0.89694 0.90182 0.89968 0.83792 0.89715 0.90525 0.90087 0.76313 0.92434 0.91346 0.92271 0.90143 0.91386 0.91694 0.91763 0.92157 0.92256 0.95643 0.95726 0.80779 0.93121 0.73256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.16 36.01 0.37 -0.21 16 2 C 0.17 1.45 6.78 -82.53 -0.56 0.89 16 3 C -0.19 -1.31 9.41 -39.50 -0.37 -1.68 16 4 C 0.01 0.09 5.95 -103.93 -0.62 -0.53 16 5 C -0.12 -0.72 9.69 36.00 0.35 -0.37 16 6 C -0.21 -2.15 5.66 -104.69 -0.59 -2.75 16 7 C 0.58 6.51 5.39 -12.47 -0.07 6.44 16 8 O -0.53 -7.61 16.77 5.29 0.09 -7.53 16 9 N -0.71 -6.66 4.53 -54.85 -0.25 -6.91 16 10 C 0.14 1.29 2.57 -67.93 -0.17 1.12 16 11 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 12 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 13 C -0.13 -1.17 4.75 -26.73 -0.13 -1.30 16 14 C -0.12 -1.40 5.10 -26.73 -0.14 -1.53 16 15 C -0.13 -1.96 5.33 -26.73 -0.14 -2.11 16 16 C 0.16 3.18 6.26 -4.04 -0.03 3.15 16 17 N -0.76 -18.98 5.41 -59.91 -0.32 -19.31 16 18 C -0.24 -7.18 10.47 -15.06 -0.16 -7.33 16 19 H 0.09 2.83 8.06 -52.49 -0.42 2.41 16 20 C 0.00 0.03 5.50 -17.43 -0.10 -0.07 16 21 N -0.94 -30.24 13.97 55.49 0.78 -29.47 16 22 Si 0.89 22.69 27.73 -169.99 -4.71 17.97 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 25 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 26 C 0.36 4.15 7.77 -16.61 -0.13 4.02 16 27 O -0.47 -5.43 13.01 -17.97 -0.23 -5.66 16 28 N -0.50 -5.74 10.28 -9.21 -0.09 -5.83 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.56 7.19 -51.93 -0.37 0.19 16 35 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 36 H 0.40 3.34 8.59 -40.82 -0.35 2.99 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 49 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 50 H 0.41 3.09 9.06 45.56 0.41 3.50 16 LS Contribution 414.85 15.07 6.25 6.25 Total: -1.00 -37.47 414.85 -8.31 -45.79 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.68 Total: 7.88 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.13 Total: -3.19 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.11 Total: -61.51 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.15 Total: -13.19 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -37.47 -8.31 -45.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174580234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.165 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds