Wall clock time and date at job start Tue Mar 31 2020 19:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38358 * 119.40962 * 2 1 4 4 C 1.38331 * 119.46324 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.82877 * 180.02562 * 4 3 2 6 6 C 1.39989 * 118.34585 * 0.02562 * 4 3 2 7 7 C 1.47530 * 120.59784 * 180.02562 * 6 4 3 8 8 O 1.21588 * 119.99970 * 269.97922 * 7 6 4 9 9 N 1.34778 * 119.99380 * 89.97901 * 7 6 4 10 10 C 1.46499 * 119.99557 * 180.02562 * 9 7 6 11 11 H 1.09000 * 109.47453 * 324.99459 * 10 9 7 12 12 C 1.53003 * 109.47423 * 84.99613 * 10 9 7 13 13 C 1.53005 * 109.46913 * 204.99743 * 10 9 7 14 14 C 1.52997 * 109.47110 * 64.99856 * 13 10 9 15 15 C 1.52996 * 109.47208 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47208 * 179.97438 * 15 14 13 17 17 N 1.46504 * 109.47278 * 180.02562 * 16 15 14 18 18 C 1.36930 * 120.00320 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00083 * 359.97438 * 18 17 16 20 20 C 1.38815 * 120.00300 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99700 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 119.99786 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46907 * 89.99770 * 22 20 18 24 24 H 1.48503 * 109.47310 * 209.99694 * 22 20 18 25 25 H 1.48493 * 109.47422 * 329.99938 * 22 20 18 26 26 C 1.40282 * 118.81087 * 359.97438 * 6 4 3 27 27 O 1.35428 * 119.80276 * 180.27787 * 26 6 4 28 28 N 1.31878 * 119.40658 * 179.97438 * 2 1 3 29 29 H 1.08992 * 109.47168 * 270.01826 * 1 2 3 30 30 H 1.08996 * 109.46833 * 30.02397 * 1 2 3 31 31 H 1.09009 * 109.46602 * 150.01731 * 1 2 3 32 32 H 1.08004 * 120.26764 * 359.95889 * 3 2 1 33 33 H 1.09002 * 109.47634 * 90.00043 * 5 4 3 34 34 H 1.08997 * 109.47098 * 210.00305 * 5 4 3 35 35 H 1.09002 * 109.46946 * 330.00034 * 5 4 3 36 36 H 0.96999 * 120.00349 * 359.97438 * 9 7 6 37 37 H 1.09008 * 109.46745 * 59.99816 * 12 10 9 38 38 H 1.08997 * 109.46936 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47327 * 299.99993 * 12 10 9 40 40 H 1.09004 * 109.46634 * 184.99975 * 13 10 9 41 41 H 1.08993 * 109.46975 * 304.99536 * 13 10 9 42 42 H 1.08994 * 109.47475 * 300.00183 * 14 13 10 43 43 H 1.09004 * 109.47072 * 60.00133 * 14 13 10 44 44 H 1.09004 * 109.47442 * 300.00000 * 15 14 13 45 45 H 1.09000 * 109.47105 * 59.99743 * 15 14 13 46 46 H 1.08994 * 109.47475 * 300.00366 * 16 15 14 47 47 H 1.09004 * 109.47072 * 60.00315 * 16 15 14 48 48 H 0.97004 * 119.99809 * 359.97438 * 17 16 15 49 49 H 0.97007 * 119.99391 * 180.02562 * 21 20 18 50 50 H 0.96695 * 113.99993 * 269.72528 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.3408 2.5013 0.0011 6 6 4.2355 -0.0248 0.0005 7 6 5.7098 -0.0814 0.0016 8 8 6.3180 -0.1047 -1.0509 9 7 6.3821 -0.1074 1.1694 10 6 7.8461 -0.1630 1.1706 11 1 8.1875 -0.7656 0.3290 12 6 8.4104 1.2536 1.0457 13 6 8.3315 -0.7919 2.4782 14 6 7.8709 -2.2494 2.5450 15 6 8.3568 -2.8785 3.8522 16 6 7.8957 -4.3358 3.9192 17 7 8.3605 -4.9380 5.1713 18 6 8.0661 -6.2453 5.4530 19 1 7.4909 -6.8323 4.7523 20 6 8.5069 -6.8160 6.6391 21 7 8.2234 -8.0725 6.9100 22 14 9.5023 -5.8009 7.8506 23 1 8.5842 -5.1287 8.8049 24 1 10.4286 -6.6895 8.5974 25 1 10.2855 -4.7774 7.1129 26 6 3.4758 -1.2042 0.0005 27 8 4.0992 -2.4064 0.0062 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0003 1.0276 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5136 32 1 1.6411 2.1376 -0.0007 33 1 4.5264 2.8133 1.0289 34 1 5.2915 2.3582 -0.5124 35 1 3.7622 3.2690 -0.5128 36 1 5.8968 -0.0885 2.0091 37 1 8.0690 1.8563 1.8874 38 1 9.4996 1.2122 1.0470 39 1 8.0647 1.7017 0.1141 40 1 9.4201 -0.7526 2.5181 41 1 7.9168 -0.2408 3.3223 42 1 6.7824 -2.2887 2.5050 43 1 8.2856 -2.8005 1.7008 44 1 9.4454 -2.8393 3.8918 45 1 7.9425 -2.3275 4.6966 46 1 6.8072 -4.3747 3.8799 47 1 8.3097 -4.8870 3.0749 48 1 8.8774 -4.4108 5.8004 49 1 8.5312 -8.4712 7.7390 50 1 4.2801 -2.7598 -0.8755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174580234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:55 Heat of formation + Delta-G solvation = -83.721332 kcal Electronic energy + Delta-G solvation = -28673.428079 eV Core-core repulsion = 24699.177010 eV Total energy + Delta-G solvation = -3974.251069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.06985 -40.46681 -38.45833 -38.11631 -36.96846 -35.30977 -34.78596 -33.29333 -32.81372 -31.83418 -29.36409 -29.02824 -28.44819 -25.84802 -24.71308 -23.63163 -22.96816 -22.20423 -21.85980 -21.51784 -19.65196 -19.53605 -18.89560 -18.27141 -17.56580 -16.72283 -16.65521 -16.34842 -15.98388 -15.83263 -15.50918 -15.18374 -14.90783 -14.84271 -14.69199 -14.32542 -14.22240 -14.19218 -14.01825 -13.93521 -13.53091 -13.27123 -13.14301 -12.98612 -12.96382 -12.93254 -12.86716 -12.64749 -12.47804 -12.33836 -12.07432 -11.91010 -11.81256 -11.56648 -11.47208 -11.33865 -10.99784 -10.65028 -10.49010 -10.15751 -9.88373 -9.34129 -8.05946 -5.40709 -0.31575 0.02546 1.35758 1.38072 1.41094 1.48721 2.07783 2.27942 2.46708 2.62894 3.24682 3.38808 3.46246 3.53704 3.63579 3.88822 3.94889 4.01288 4.05371 4.18301 4.27601 4.32295 4.36320 4.49510 4.55182 4.57601 4.61345 4.65164 4.73497 4.78967 4.84796 4.89738 4.93705 4.96103 4.98193 5.00864 5.07649 5.11105 5.17268 5.22233 5.31776 5.38233 5.47576 5.50202 5.52510 5.71360 6.18259 6.37801 6.39156 6.80570 7.04522 7.06314 7.79934 8.01599 9.15848 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.002368 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.386275 B =11822.031382 C =13293.016679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.177 4.177 4 C 0.008 3.992 5 C -0.121 4.121 6 C -0.223 4.223 7 C 0.585 3.415 8 O -0.572 6.572 9 N -0.699 5.699 10 C 0.141 3.859 11 H 0.068 0.932 12 C -0.156 4.156 13 C -0.116 4.116 14 C -0.108 4.108 15 C -0.115 4.115 16 C 0.150 3.850 17 N -0.760 5.760 18 C -0.244 4.244 19 H 0.049 0.951 20 C -0.068 4.068 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.248 1.248 26 C 0.337 3.663 27 O -0.492 6.492 28 N -0.537 5.537 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.184 0.816 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.368 0.632 49 H 0.259 0.741 50 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 31.969 -16.186 37.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.021 3.979 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.177 4.177 6 C -0.229 4.229 7 C 0.370 3.630 8 O -0.452 6.452 9 N -0.349 5.349 10 C 0.037 3.963 11 H 0.087 0.913 12 C -0.214 4.214 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.153 4.153 16 C 0.024 3.976 17 N -0.406 5.406 18 C -0.375 4.375 19 H 0.067 0.933 20 C -0.259 4.259 21 N -0.635 5.635 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.219 1.219 25 H -0.173 1.173 26 C 0.158 3.842 27 O -0.302 6.302 28 N -0.258 5.258 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.201 0.799 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.245 0.755 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.202 0.798 49 H 0.068 0.932 50 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -11.161 30.989 -16.387 36.789 hybrid contribution 0.795 -0.296 0.562 1.018 sum -10.366 30.693 -15.826 36.055 Atomic orbital electron populations 1.20936 0.85872 1.04998 1.04533 1.21880 0.98608 0.86905 0.90500 1.22179 0.93150 1.00601 1.03689 1.20613 0.94531 0.94077 0.90752 1.20997 0.99577 0.92482 1.04630 1.20872 0.94284 0.94895 1.12886 1.17870 0.86346 0.74796 0.83978 1.90788 1.70151 1.51719 1.32575 1.46081 1.07797 1.72917 1.08137 1.21097 0.78489 0.97757 0.98987 0.91333 1.22113 1.02034 0.95140 1.02090 1.21858 1.02803 0.94341 0.96329 1.21426 1.00760 0.96078 0.96362 1.21654 1.01362 0.93466 0.98774 1.20826 0.96215 0.93615 0.86909 1.42734 1.66154 1.10015 1.21673 1.19060 1.27701 0.88125 1.02589 0.93272 1.25652 1.02620 0.97373 1.00303 1.69914 1.52770 1.14230 1.26622 0.85274 0.78637 0.78284 0.78773 1.20053 1.21934 1.17272 1.19223 0.86815 0.84697 0.93487 1.84687 1.76773 1.33144 1.35564 1.67103 1.09209 1.32287 1.17164 0.88850 0.87173 0.90931 0.79870 0.88073 0.92339 0.87611 0.75503 0.90812 0.90194 0.93560 0.88753 0.89608 0.92507 0.92652 0.91234 0.91122 0.96694 0.96655 0.79846 0.93183 0.72225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.16 71.24 0.72 -0.20 16 2 C 0.16 2.49 6.78 42.58 0.29 2.78 16 3 C -0.18 -2.00 9.41 22.32 0.21 -1.79 16 4 C 0.01 0.12 5.95 -19.42 -0.12 0.00 16 5 C -0.12 -1.11 9.69 71.23 0.69 -0.41 16 6 C -0.22 -4.66 5.66 -19.91 -0.11 -4.77 16 7 C 0.58 13.34 5.39 86.69 0.47 13.81 16 8 O -0.57 -16.98 16.77 -3.99 -0.07 -17.04 16 9 N -0.70 -12.74 4.53 -445.69 -2.02 -14.76 16 10 C 0.14 2.43 2.57 44.99 0.12 2.54 16 11 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 12 C -0.16 -2.11 9.48 71.98 0.68 -1.43 16 13 C -0.12 -1.84 4.75 30.59 0.15 -1.70 16 14 C -0.11 -2.49 5.10 30.59 0.16 -2.34 16 15 C -0.11 -3.26 5.33 30.59 0.16 -3.10 16 16 C 0.15 6.11 6.26 86.38 0.54 6.65 16 17 N -0.76 -37.57 5.41 -343.45 -1.86 -39.43 16 18 C -0.24 -14.76 10.47 84.04 0.88 -13.88 16 19 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.99 -65.20 13.97 21.65 0.30 -64.90 16 22 Si 0.96 46.31 27.73 68.60 1.90 48.21 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 25 H -0.25 -10.63 6.52 99.48 0.65 -9.99 16 26 C 0.34 8.13 7.77 85.13 0.66 8.79 16 27 O -0.49 -12.35 13.01 -87.23 -1.14 -13.48 16 28 N -0.54 -12.49 10.28 -296.04 -3.04 -15.53 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.27 8.07 -2.39 -0.02 0.25 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.79 7.19 -2.39 -0.02 0.77 16 35 H 0.11 0.45 8.10 -2.39 -0.02 0.43 16 36 H 0.41 6.33 8.59 -92.71 -0.80 5.54 16 37 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 43 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.37 16.86 5.53 -92.71 -0.51 16.35 16 49 H 0.26 16.20 8.31 -92.70 -0.77 15.43 16 50 H 0.42 7.44 9.06 -74.06 -0.67 6.77 16 Total: -1.00 -84.71 414.85 -1.03 -85.74 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -1.08 Total: 29.94 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.96 Total: 1.25 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -6.61 Total: -134.62 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.20 Total: -30.52 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -84.71 -1.03 -85.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174580234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.021 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds