Wall clock time and date at job start Tue Mar 31 2020 18:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00253 * 2 1 4 4 C 1.38895 * 119.62653 * 179.97438 * 3 2 1 5 5 C 1.39566 * 118.94952 * 180.02562 * 4 3 2 6 6 C 1.48171 * 120.89357 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99954 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99466 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99224 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47526 * 35.00383 * 9 8 6 11 11 C 1.52999 * 109.46994 * 274.99928 * 9 8 6 12 12 C 1.53002 * 109.46533 * 155.00252 * 9 8 6 13 13 C 1.53004 * 109.47107 * 294.99868 * 12 9 8 14 14 C 1.53000 * 109.47029 * 180.02562 * 13 12 9 15 15 C 1.52994 * 109.47372 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47570 * 179.97438 * 15 14 13 17 17 C 1.36941 * 120.00475 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99850 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00240 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46766 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46879 * 119.99782 * 21 19 17 24 24 H 1.48498 * 109.47188 * 240.00260 * 21 19 17 25 25 C 1.39970 * 118.21668 * 0.02562 * 5 4 3 26 26 C 1.37977 * 119.13207 * 0.02562 * 25 5 4 27 27 C 1.50706 * 119.50693 * 179.97438 * 26 25 5 28 28 N 1.31905 * 120.97834 * 0.25148 * 26 25 5 29 29 H 1.09003 * 109.46692 * 299.99438 * 1 2 3 30 30 H 1.08996 * 109.46956 * 59.99493 * 1 2 3 31 31 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.52188 * 0.02562 * 4 3 2 33 33 H 0.96998 * 120.00040 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.46901 * 60.00636 * 11 9 8 35 35 H 1.09003 * 109.46731 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.47325 * 300.00070 * 11 9 8 37 37 H 1.08998 * 109.47228 * 55.00181 * 12 9 8 38 38 H 1.09003 * 109.46854 * 175.00076 * 12 9 8 39 39 H 1.09001 * 109.47079 * 299.99528 * 13 12 9 40 40 H 1.08994 * 109.47104 * 60.00041 * 13 12 9 41 41 H 1.09006 * 109.46914 * 299.99729 * 14 13 12 42 42 H 1.08995 * 109.47225 * 59.99376 * 14 13 12 43 43 H 1.08998 * 109.47098 * 299.99934 * 15 14 13 44 44 H 1.09008 * 109.46935 * 59.99370 * 15 14 13 45 45 H 0.97000 * 119.99787 * 359.97438 * 16 15 14 46 46 H 0.96994 * 120.00521 * 180.02562 * 20 19 17 47 47 H 1.07999 * 120.43144 * 180.02562 * 25 5 4 48 48 H 1.08999 * 109.47015 * 90.00142 * 27 26 25 49 49 H 1.09000 * 109.46646 * 209.99294 * 27 26 25 50 50 H 1.09000 * 109.47248 * 330.00012 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0515 2.5234 0.0011 6 6 5.5285 2.6414 0.0011 7 8 6.0503 3.7388 0.0011 8 7 6.2931 1.5315 0.0011 9 6 7.7534 1.6482 0.0006 10 1 8.0488 2.5164 0.5897 11 6 8.2513 1.8138 -1.4367 12 6 8.3661 0.3857 0.6103 13 6 7.9684 0.2866 2.0844 14 6 8.5816 -0.9755 2.6943 15 6 8.1835 -1.0751 4.1681 16 7 8.7701 -2.2838 4.7519 17 6 8.5487 -2.5849 6.0693 18 1 7.9419 -1.9310 6.6781 19 6 9.1040 -3.7306 6.6223 20 7 9.8439 -4.5273 5.8806 21 14 8.8025 -4.1409 8.4196 22 1 7.9447 -3.0931 9.0294 23 1 8.1219 -5.4570 8.5194 24 1 10.1005 -4.1990 9.1386 25 6 3.2395 3.6635 0.0016 26 6 1.8681 3.5115 0.0021 27 6 0.9859 4.7333 0.0033 28 7 1.3179 2.3127 0.0071 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0230 0.3682 0.0005 33 1 5.8764 0.6555 0.0007 34 1 7.8148 2.7132 -1.8710 35 1 9.3379 1.9002 -1.4371 36 1 7.9559 0.9456 -2.0258 37 1 7.9999 -0.4906 0.0754 38 1 9.4520 0.4333 0.5293 39 1 8.3348 1.1629 2.6192 40 1 6.8826 0.2391 2.1654 41 1 8.2157 -1.8521 2.1595 42 1 9.6675 -0.9276 2.6132 43 1 8.5490 -0.1986 4.7032 44 1 7.0975 -1.1232 4.2487 45 1 9.3148 -2.8714 4.2051 46 1 10.2317 -5.3281 6.2669 47 1 3.6807 4.6493 0.0016 48 1 0.7727 5.0285 -1.0241 49 1 0.0518 4.5064 0.5173 50 1 1.4949 5.5486 0.5174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174920701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:59 Heat of formation + Delta-G solvation = -48.323665 kcal Electronic energy + Delta-G solvation = -28029.077232 eV Core-core repulsion = 24056.361121 eV Total energy + Delta-G solvation = -3972.716111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30706 -39.96307 -38.31272 -37.01717 -35.29760 -33.93857 -33.10129 -32.18253 -31.37048 -30.23611 -28.74549 -27.46365 -26.98880 -24.99179 -24.06469 -23.11877 -22.17940 -21.04950 -20.74303 -20.64131 -18.83393 -17.47048 -17.10428 -16.97493 -16.46286 -16.33214 -15.98734 -15.31350 -15.07084 -14.73108 -14.63694 -14.50815 -14.39440 -13.95899 -13.68730 -13.54723 -13.16276 -13.01069 -12.95981 -12.81763 -12.79518 -12.55180 -12.38855 -12.08567 -11.78729 -11.51111 -11.40993 -11.28780 -11.01786 -10.82088 -10.71776 -10.55755 -10.41012 -10.30570 -10.27531 -10.03074 -9.95704 -9.66552 -9.34196 -8.85899 -8.85023 -6.88872 -5.74316 -3.02622 0.28769 0.71840 2.54295 2.58360 2.81080 3.39621 3.44691 3.50133 3.52610 3.69220 4.18738 4.45610 4.50331 4.58484 4.64732 4.67971 4.84614 4.91537 4.94325 4.96589 5.00344 5.07721 5.15749 5.22991 5.27563 5.36419 5.42005 5.45546 5.53096 5.54727 5.59467 5.63305 5.68528 5.76621 5.86592 5.92170 5.93304 6.08162 6.16532 6.30482 6.32819 6.39156 6.47091 6.79880 6.90784 6.94619 7.15065 7.39069 7.72803 7.83432 8.45168 9.55922 10.15185 10.49744 11.48894 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.002215 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.904796 B =12639.681816 C =14428.885095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.326 3.674 4 C -0.166 4.166 5 C -0.048 4.048 6 C 0.562 3.438 7 O -0.527 6.527 8 N -0.712 5.712 9 C 0.140 3.860 10 H 0.092 0.908 11 C -0.164 4.164 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.155 4.155 26 C 0.165 3.835 27 C -0.105 4.105 28 N -0.527 5.527 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.147 0.853 33 H 0.402 0.598 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.150 0.850 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 16.596 -19.823 30.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.146 3.854 4 C -0.187 4.187 5 C -0.059 4.059 6 C 0.348 3.652 7 O -0.404 6.404 8 N -0.364 5.364 9 C 0.036 3.964 10 H 0.110 0.890 11 C -0.222 4.222 12 C -0.166 4.166 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.176 4.176 26 C 0.029 3.971 27 C -0.162 4.162 28 N -0.253 5.253 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.164 0.836 33 H 0.238 0.762 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.168 0.832 48 H 0.101 0.899 49 H 0.098 0.902 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.118 17.036 -19.633 31.124 hybrid contribution 0.458 -0.954 0.853 1.359 sum -16.660 16.082 -18.780 29.814 Atomic orbital electron populations 1.22898 0.76839 1.03267 1.02487 1.86278 1.23215 1.23959 1.87597 1.19605 0.88959 0.84758 0.92040 1.21185 0.92530 0.98474 1.06511 1.20164 0.93895 0.93173 0.98654 1.18036 0.85781 0.84710 0.76717 1.90784 1.74105 1.26269 1.49193 1.46052 1.07399 1.08742 1.74184 1.21136 0.78180 1.00037 0.97010 0.88999 1.22182 1.01690 1.02198 0.96114 1.21957 1.01640 0.96335 0.96618 1.21535 1.00768 0.98871 0.94167 1.21723 1.00694 0.96818 0.97096 1.20648 0.95770 0.90396 0.90736 1.42397 1.61045 1.24673 1.09788 1.19299 1.25533 1.05012 0.86992 0.91191 1.24752 1.00551 0.97756 0.98194 1.69669 1.38311 1.15252 1.35145 0.86109 0.77310 0.77858 0.84904 1.20563 1.21862 1.21852 1.21920 0.93243 0.99824 1.02593 1.20918 0.91660 0.91907 0.92634 1.20777 0.99185 0.92738 1.03522 1.67005 1.41242 0.98491 1.18518 0.92116 0.92265 0.88342 0.83559 0.76187 0.92209 0.91263 0.92359 0.91214 0.89944 0.91898 0.92156 0.92095 0.92005 0.96569 0.96629 0.78349 0.93600 0.83180 0.89921 0.90169 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.04 10.47 -18.74 -0.20 -3.23 16 3 C 0.33 3.40 7.49 -17.16 -0.13 3.27 16 4 C -0.17 -1.57 9.55 -38.84 -0.37 -1.95 16 5 C -0.05 -0.49 5.91 -104.67 -0.62 -1.11 16 6 C 0.56 6.28 7.76 -12.18 -0.09 6.19 16 7 O -0.53 -7.42 16.11 5.35 0.09 -7.33 16 8 N -0.71 -6.59 4.49 -54.64 -0.25 -6.84 16 9 C 0.14 1.32 2.57 -67.93 -0.17 1.14 16 10 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 11 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 12 C -0.13 -1.21 4.75 -26.73 -0.13 -1.33 16 13 C -0.12 -1.40 5.10 -26.73 -0.14 -1.54 16 14 C -0.13 -1.98 5.33 -26.73 -0.14 -2.13 16 15 C 0.15 3.15 6.26 -4.05 -0.03 3.13 16 16 N -0.74 -19.31 5.60 -59.92 -0.34 -19.65 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 20 N -0.93 -28.83 13.06 55.49 0.72 -28.10 16 21 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 C -0.15 -1.46 9.30 -39.03 -0.36 -1.83 16 26 C 0.17 1.46 6.77 -82.65 -0.56 0.90 16 27 C -0.10 -0.58 10.16 36.01 0.37 -0.22 16 28 N -0.53 -5.35 9.09 -9.60 -0.09 -5.44 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.15 1.11 6.53 -52.49 -0.34 0.76 16 33 H 0.40 3.02 6.74 -40.82 -0.28 2.74 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.15 1.30 7.74 -52.49 -0.41 0.89 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 LS Contribution 416.28 15.07 6.27 6.27 Total: -1.00 -34.85 416.28 -8.46 -43.31 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.44 Total: 5.95 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.22 Total: -2.76 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.06 Total: -60.03 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.11 Total: -10.56 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.85 -8.46 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174920701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.010 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds