Wall clock time and date at job start Tue Mar 31 2020 18:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00253 * 2 1 4 4 C 1.38895 * 119.62653 * 179.97438 * 3 2 1 5 5 C 1.39566 * 118.94952 * 180.02562 * 4 3 2 6 6 C 1.48171 * 120.89357 * 180.02562 * 5 4 3 7 7 O 1.21514 * 119.99954 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99466 * 359.97438 * 6 5 4 9 9 C 1.46503 * 119.99224 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.47526 * 35.00383 * 9 8 6 11 11 C 1.52999 * 109.46994 * 274.99928 * 9 8 6 12 12 C 1.53002 * 109.46533 * 155.00252 * 9 8 6 13 13 C 1.53004 * 109.47107 * 294.99868 * 12 9 8 14 14 C 1.53000 * 109.47029 * 180.02562 * 13 12 9 15 15 C 1.52994 * 109.47372 * 180.02562 * 14 13 12 16 16 N 1.46493 * 109.47570 * 179.97438 * 15 14 13 17 17 C 1.36941 * 120.00475 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99850 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00303 * 179.97438 * 17 16 15 20 20 N 1.31618 * 120.00240 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00121 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46766 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46879 * 119.99782 * 21 19 17 24 24 H 1.48498 * 109.47188 * 240.00260 * 21 19 17 25 25 C 1.39970 * 118.21668 * 0.02562 * 5 4 3 26 26 C 1.37977 * 119.13207 * 0.02562 * 25 5 4 27 27 C 1.50706 * 119.50693 * 179.97438 * 26 25 5 28 28 N 1.31905 * 120.97834 * 0.25148 * 26 25 5 29 29 H 1.09003 * 109.46692 * 299.99438 * 1 2 3 30 30 H 1.08996 * 109.46956 * 59.99493 * 1 2 3 31 31 H 1.08997 * 109.47352 * 179.97438 * 1 2 3 32 32 H 1.07999 * 120.52188 * 0.02562 * 4 3 2 33 33 H 0.96998 * 120.00040 * 0.02562 * 8 6 5 34 34 H 1.08997 * 109.46901 * 60.00636 * 11 9 8 35 35 H 1.09003 * 109.46731 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.47325 * 300.00070 * 11 9 8 37 37 H 1.08998 * 109.47228 * 55.00181 * 12 9 8 38 38 H 1.09003 * 109.46854 * 175.00076 * 12 9 8 39 39 H 1.09001 * 109.47079 * 299.99528 * 13 12 9 40 40 H 1.08994 * 109.47104 * 60.00041 * 13 12 9 41 41 H 1.09006 * 109.46914 * 299.99729 * 14 13 12 42 42 H 1.08995 * 109.47225 * 59.99376 * 14 13 12 43 43 H 1.08998 * 109.47098 * 299.99934 * 15 14 13 44 44 H 1.09008 * 109.46935 * 59.99370 * 15 14 13 45 45 H 0.97000 * 119.99787 * 359.97438 * 16 15 14 46 46 H 0.96994 * 120.00521 * 180.02562 * 20 19 17 47 47 H 1.07999 * 120.43144 * 180.02562 * 25 5 4 48 48 H 1.08999 * 109.47015 * 90.00142 * 27 26 25 49 49 H 1.09000 * 109.46646 * 209.99294 * 27 26 25 50 50 H 1.09000 * 109.47248 * 330.00012 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0515 2.5234 0.0011 6 6 5.5285 2.6414 0.0011 7 8 6.0503 3.7388 0.0011 8 7 6.2931 1.5315 0.0011 9 6 7.7534 1.6482 0.0006 10 1 8.0488 2.5164 0.5897 11 6 8.2513 1.8138 -1.4367 12 6 8.3661 0.3857 0.6103 13 6 7.9684 0.2866 2.0844 14 6 8.5816 -0.9755 2.6943 15 6 8.1835 -1.0751 4.1681 16 7 8.7701 -2.2838 4.7519 17 6 8.5487 -2.5849 6.0693 18 1 7.9419 -1.9310 6.6781 19 6 9.1040 -3.7306 6.6223 20 7 9.8439 -4.5273 5.8806 21 14 8.8025 -4.1409 8.4196 22 1 7.9447 -3.0931 9.0294 23 1 8.1219 -5.4570 8.5194 24 1 10.1005 -4.1990 9.1386 25 6 3.2395 3.6635 0.0016 26 6 1.8681 3.5115 0.0021 27 6 0.9859 4.7333 0.0033 28 7 1.3179 2.3127 0.0071 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 4.0230 0.3682 0.0005 33 1 5.8764 0.6555 0.0007 34 1 7.8148 2.7132 -1.8710 35 1 9.3379 1.9002 -1.4371 36 1 7.9559 0.9456 -2.0258 37 1 7.9999 -0.4906 0.0754 38 1 9.4520 0.4333 0.5293 39 1 8.3348 1.1629 2.6192 40 1 6.8826 0.2391 2.1654 41 1 8.2157 -1.8521 2.1595 42 1 9.6675 -0.9276 2.6132 43 1 8.5490 -0.1986 4.7032 44 1 7.0975 -1.1232 4.2487 45 1 9.3148 -2.8714 4.2051 46 1 10.2317 -5.3281 6.2669 47 1 3.6807 4.6493 0.0016 48 1 0.7727 5.0285 -1.0241 49 1 0.0518 4.5064 0.5173 50 1 1.4949 5.5486 0.5174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174920701.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:58 Heat of formation + Delta-G solvation = -72.372078 kcal Electronic energy + Delta-G solvation = -28030.120050 eV Core-core repulsion = 24056.361121 eV Total energy + Delta-G solvation = -3973.758928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.04205 -40.77979 -39.01108 -38.04579 -36.86180 -34.97022 -34.38613 -32.89494 -32.76641 -31.50406 -29.32576 -28.82731 -27.58319 -26.08210 -25.49060 -23.80813 -23.64494 -22.08488 -21.89264 -21.49723 -19.56282 -19.13380 -18.19798 -17.85467 -17.16426 -17.10013 -16.76317 -16.66960 -16.29895 -16.06411 -15.50156 -15.36949 -15.29115 -15.18963 -14.99195 -14.58927 -14.35405 -14.19003 -14.05925 -13.41413 -13.32874 -13.25769 -13.09144 -13.02572 -12.90691 -12.86568 -12.68135 -12.46796 -12.30471 -12.12118 -12.04764 -11.89848 -11.82729 -11.54290 -11.41196 -11.36640 -11.03334 -10.95975 -10.78859 -10.17244 -9.55306 -9.02532 -7.97807 -5.27067 -0.46748 0.00291 1.45792 1.46931 1.57234 1.72132 1.87091 2.08859 2.54200 2.65539 3.06704 3.35536 3.45160 3.62459 3.77846 3.89852 3.98129 4.01518 4.05114 4.13336 4.33903 4.37976 4.40210 4.41640 4.42476 4.52349 4.60374 4.64581 4.74651 4.76571 4.76991 4.84409 4.87052 4.92007 4.96126 4.98366 5.00798 5.04533 5.09890 5.26816 5.32250 5.33952 5.40497 5.45180 5.52376 5.53622 6.11746 6.25466 6.37888 6.68141 7.02575 7.31002 8.07572 8.31109 9.26015 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.002215 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.904796 B =12639.681816 C =14428.885095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.310 3.690 4 C -0.167 4.167 5 C -0.058 4.058 6 C 0.562 3.438 7 O -0.561 6.561 8 N -0.702 5.702 9 C 0.143 3.857 10 H 0.075 0.925 11 C -0.158 4.158 12 C -0.117 4.117 13 C -0.107 4.107 14 C -0.112 4.112 15 C 0.147 3.853 16 N -0.749 5.749 17 C -0.249 4.249 18 H 0.072 0.928 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.161 4.161 26 C 0.161 3.839 27 C -0.103 4.103 28 N -0.536 5.536 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.163 0.837 33 H 0.412 0.588 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.013 0.987 44 H 0.016 0.984 45 H 0.374 0.626 46 H 0.252 0.748 47 H 0.155 0.845 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.517 16.885 -20.212 31.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.131 3.869 4 C -0.188 4.188 5 C -0.069 4.069 6 C 0.349 3.651 7 O -0.441 6.441 8 N -0.354 5.354 9 C 0.039 3.961 10 H 0.093 0.907 11 C -0.216 4.216 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.021 3.979 16 N -0.392 5.392 17 C -0.380 4.380 18 H 0.090 0.910 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.192 1.192 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.182 4.182 26 C 0.025 3.975 27 C -0.160 4.160 28 N -0.262 5.262 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.173 0.827 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.988 17.332 -20.033 32.020 hybrid contribution 0.670 -1.004 0.956 1.540 sum -17.317 16.328 -19.077 30.503 Atomic orbital electron populations 1.23085 0.75546 1.04745 1.02434 1.86257 1.24596 1.23892 1.87600 1.19837 0.89439 0.85085 0.92492 1.21317 0.92529 0.98817 1.06171 1.20159 0.93383 0.93810 0.99498 1.18189 0.86244 0.84541 0.76159 1.90763 1.74735 1.27518 1.51066 1.46023 1.07412 1.08843 1.73147 1.21090 0.78121 0.99317 0.97577 0.90693 1.22127 1.02319 1.02025 0.95139 1.21867 1.02254 0.96853 0.94536 1.21445 1.00649 0.96610 0.95797 1.21596 1.00748 0.98752 0.93907 1.20861 0.95333 0.88074 0.93622 1.42636 1.61224 1.26124 1.09188 1.19680 1.25030 1.05021 0.88315 0.90956 1.25615 1.00829 0.97894 1.02612 1.69816 1.39525 1.15682 1.36959 0.85046 0.77162 0.77664 0.79723 1.19197 1.21710 1.21777 1.22089 0.93634 0.99954 1.02549 1.21420 0.91948 0.92519 0.91613 1.20877 0.98771 0.91679 1.04646 1.67069 1.41526 0.98850 1.18791 0.92433 0.92020 0.86148 0.81981 0.75015 0.93625 0.90122 0.91143 0.89702 0.89048 0.92410 0.91844 0.91857 0.92221 0.96892 0.96615 0.79370 0.93870 0.82731 0.88523 0.89926 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.32 -6.09 10.47 -89.97 -0.94 -7.04 16 3 C 0.31 6.30 7.49 84.80 0.63 6.94 16 4 C -0.17 -3.06 9.55 22.75 0.22 -2.84 16 5 C -0.06 -1.15 5.91 -19.90 -0.12 -1.27 16 6 C 0.56 12.34 7.76 86.88 0.67 13.01 16 7 O -0.56 -15.88 16.11 -3.76 -0.06 -15.94 16 8 N -0.70 -12.16 4.49 -445.09 -2.00 -14.16 16 9 C 0.14 2.48 2.57 44.99 0.12 2.60 16 10 H 0.07 1.60 7.58 -2.39 -0.02 1.59 16 11 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 12 C -0.12 -1.95 4.75 30.60 0.15 -1.81 16 13 C -0.11 -2.43 5.10 30.60 0.16 -2.28 16 14 C -0.11 -3.42 5.33 30.59 0.16 -3.25 16 15 C 0.15 6.05 6.26 86.38 0.54 6.59 16 16 N -0.75 -39.46 5.60 -343.47 -1.92 -41.38 16 17 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 20 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 21 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 C -0.16 -2.98 9.30 22.63 0.21 -2.77 16 26 C 0.16 2.73 6.77 42.49 0.29 3.02 16 27 C -0.10 -0.99 10.16 71.24 0.72 -0.27 16 28 N -0.54 -10.56 9.09 -297.17 -2.70 -13.26 16 29 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 30 H 0.06 0.77 8.11 -2.39 -0.02 0.75 16 31 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.16 2.25 6.53 -2.91 -0.02 2.23 16 33 H 0.41 5.46 6.74 -92.71 -0.63 4.83 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 41 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.37 20.67 7.67 -92.71 -0.71 19.96 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.16 2.64 7.74 -2.91 -0.02 2.62 16 48 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.10 0.65 8.07 -2.39 -0.02 0.63 16 Total: -1.00 -74.58 416.28 1.20 -73.38 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.40 Total: 29.36 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.92 Total: 0.02 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -6.34 Total: -128.66 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.00 Total: -22.98 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.58 1.20 -73.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174920701.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.004 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds