Wall clock time and date at job start Tue Mar 31 2020 18:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35680 * 117.00246 * 2 1 4 4 C 1.38898 * 119.62779 * 179.97438 * 3 2 1 5 5 C 1.39568 * 118.94979 * 180.02562 * 4 3 2 6 6 C 1.48166 * 120.89178 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99748 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99901 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99614 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47676 * 324.99283 * 9 8 6 11 11 C 1.52998 * 109.47575 * 84.99689 * 9 8 6 12 12 C 1.53002 * 109.47093 * 204.99616 * 9 8 6 13 13 C 1.52998 * 109.46814 * 64.99566 * 12 9 8 14 14 C 1.53002 * 109.46814 * 180.02562 * 13 12 9 15 15 C 1.53008 * 109.47177 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47112 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99704 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00588 * 359.97438 * 17 16 15 19 19 C 1.38821 * 119.99823 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99716 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47258 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47108 * 119.99899 * 21 19 17 24 24 H 1.48511 * 109.46664 * 239.99904 * 21 19 17 25 25 C 1.39963 * 118.21562 * 0.25263 * 5 4 3 26 26 C 1.37975 * 119.13529 * 359.51995 * 25 5 4 27 27 C 1.50710 * 119.51501 * 180.20616 * 26 25 5 28 28 N 1.31908 * 120.97863 * 0.49689 * 26 25 5 29 29 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46883 * 299.99536 * 1 2 3 31 31 H 1.09000 * 109.47212 * 59.99802 * 1 2 3 32 32 H 1.08003 * 120.52219 * 359.97438 * 4 3 2 33 33 H 0.96996 * 119.99887 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47400 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47056 * 300.00185 * 11 9 8 36 36 H 1.08997 * 109.47198 * 59.99601 * 11 9 8 37 37 H 1.08997 * 109.47360 * 185.00182 * 12 9 8 38 38 H 1.09004 * 109.46912 * 305.00313 * 12 9 8 39 39 H 1.08997 * 109.47661 * 300.00432 * 13 12 9 40 40 H 1.09001 * 109.47386 * 60.01077 * 13 12 9 41 41 H 1.08996 * 109.47591 * 300.00118 * 14 13 12 42 42 H 1.09004 * 109.46912 * 60.00748 * 14 13 12 43 43 H 1.08996 * 109.47016 * 300.00543 * 15 14 13 44 44 H 1.09004 * 109.46530 * 60.00586 * 15 14 13 45 45 H 0.96994 * 120.00104 * 0.02562 * 16 15 14 46 46 H 0.96998 * 120.00356 * 180.02562 * 20 19 17 47 47 H 1.08010 * 120.43302 * 179.74639 * 25 5 4 48 48 H 1.08997 * 109.46982 * 270.28243 * 27 26 25 49 49 H 1.09002 * 109.46363 * 30.28089 * 27 26 25 50 50 H 1.09003 * 109.47038 * 150.27714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0514 2.5235 0.0011 6 6 5.5284 2.6414 0.0022 7 8 6.0502 3.7389 0.0032 8 7 6.2930 1.5316 0.0023 9 6 7.7533 1.6483 0.0028 10 1 8.0488 2.5165 -0.5864 11 6 8.2513 1.8140 1.4400 12 6 8.3661 0.3858 -0.6068 13 6 7.9684 0.2866 -2.0808 14 6 8.5807 -0.9762 -2.6903 15 6 8.1825 -1.0758 -4.1643 16 7 8.7683 -2.2852 -4.7477 17 6 8.5474 -2.5859 -6.0652 18 1 7.9412 -1.9317 -6.6742 19 6 9.1020 -3.7323 -6.6179 20 7 9.8404 -4.5298 -5.8757 21 14 8.8002 -4.1428 -8.4151 22 1 7.9433 -3.0946 -9.0251 23 1 10.0982 -4.2021 -9.1341 24 1 8.1186 -5.4585 -8.5145 25 6 3.2394 3.6635 0.0065 26 6 1.8681 3.5115 0.0010 27 6 0.9857 4.7333 0.0020 28 7 1.3178 2.3127 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0230 0.3682 0.0014 33 1 5.8765 0.6556 0.0019 34 1 9.3378 1.9004 1.4404 35 1 7.8147 2.7134 1.8743 36 1 7.9559 0.9459 2.0292 37 1 9.4520 0.4334 -0.5257 38 1 7.9999 -0.4905 -0.0719 39 1 6.8825 0.2391 -2.1619 40 1 8.3347 1.1629 -2.6158 41 1 9.6666 -0.9291 -2.6093 42 1 8.2141 -1.8523 -2.1554 43 1 7.0966 -1.1231 -4.2449 44 1 8.5488 -0.1997 -4.6995 45 1 9.3124 -2.8730 -4.2007 46 1 10.2283 -5.3306 -6.2620 47 1 3.6806 4.6494 0.0112 48 1 0.7733 5.0272 1.0299 49 1 1.4944 5.5492 -0.5115 50 1 0.0513 4.5071 -0.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174920703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:03 Heat of formation + Delta-G solvation = -48.332095 kcal Electronic energy + Delta-G solvation = -28029.454679 eV Core-core repulsion = 24056.738203 eV Total energy + Delta-G solvation = -3972.716476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30691 -39.96328 -38.31311 -37.01735 -35.29716 -33.93837 -33.10125 -32.18218 -31.37062 -30.23653 -28.74529 -27.46355 -26.98863 -24.99188 -24.06405 -23.11845 -22.17906 -21.04959 -20.74319 -20.64133 -18.83402 -17.47063 -17.10431 -16.97505 -16.46151 -16.33303 -15.98739 -15.31312 -15.07084 -14.73102 -14.63688 -14.51054 -14.39269 -13.95876 -13.68777 -13.54671 -13.16278 -13.00984 -12.96007 -12.81679 -12.79582 -12.55230 -12.38856 -12.08536 -11.78725 -11.51137 -11.40979 -11.28773 -11.01803 -10.82061 -10.71795 -10.55737 -10.41001 -10.30529 -10.27558 -10.03086 -9.95737 -9.66508 -9.34193 -8.85890 -8.85022 -6.88923 -5.74343 -3.02569 0.28763 0.71856 2.54277 2.58386 2.81085 3.39627 3.44680 3.50150 3.52618 3.69233 4.18739 4.45609 4.50335 4.58487 4.64733 4.67948 4.84617 4.91574 4.94315 4.96573 5.00353 5.07714 5.15761 5.23012 5.27571 5.36432 5.42018 5.45538 5.53083 5.54721 5.59449 5.63289 5.68543 5.76622 5.86584 5.92164 5.93312 6.08157 6.16556 6.30455 6.32829 6.39150 6.47093 6.79899 6.90781 6.94632 7.15063 7.39051 7.72807 7.83431 8.45107 9.55906 10.15197 10.49795 11.48870 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.002215 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.044140 B =12636.891902 C =14428.017592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.304 6.304 3 C 0.326 3.674 4 C -0.166 4.166 5 C -0.048 4.048 6 C 0.562 3.438 7 O -0.527 6.527 8 N -0.712 5.712 9 C 0.140 3.860 10 H 0.092 0.908 11 C -0.164 4.164 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.152 3.848 16 N -0.735 5.735 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.155 4.155 26 C 0.165 3.835 27 C -0.105 4.105 28 N -0.527 5.527 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.147 0.853 33 H 0.402 0.598 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.150 0.850 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.663 16.604 19.805 30.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.210 6.210 3 C 0.146 3.854 4 C -0.187 4.187 5 C -0.059 4.059 6 C 0.348 3.652 7 O -0.404 6.404 8 N -0.364 5.364 9 C 0.036 3.964 10 H 0.110 0.890 11 C -0.222 4.222 12 C -0.165 4.165 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.024 3.976 16 N -0.379 5.379 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.176 4.176 26 C 0.029 3.971 27 C -0.162 4.162 28 N -0.253 5.253 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.238 0.762 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.168 0.832 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.109 17.043 19.626 31.118 hybrid contribution 0.458 -0.953 -0.858 1.362 sum -16.651 16.089 18.768 29.805 Atomic orbital electron populations 1.22897 0.76841 1.03267 1.02487 1.86277 1.23214 1.23958 1.87595 1.19607 0.88958 0.84757 0.92038 1.21187 0.92529 0.98474 1.06512 1.20161 0.93893 0.93172 0.98653 1.18035 0.85782 0.84710 0.76718 1.90785 1.74107 1.26267 1.49193 1.46049 1.07398 1.08744 1.74183 1.21134 0.78182 1.00036 0.97011 0.89002 1.22182 1.01689 1.02198 0.96114 1.21956 1.01640 0.96336 0.96618 1.21535 1.00772 0.98865 0.94170 1.21726 1.00697 0.96811 0.97099 1.20651 0.95776 0.90387 0.90738 1.42394 1.61118 1.24613 1.09774 1.19301 1.25583 1.04978 0.86985 0.91189 1.24755 1.00568 0.97737 0.98194 1.69668 1.38366 1.15216 1.35119 0.86109 0.77312 0.77858 0.84903 1.20563 1.21854 1.21862 1.21919 0.93244 0.99827 1.02597 1.20920 0.91660 0.91907 0.92629 1.20778 0.99182 0.92739 1.03521 1.67008 1.41237 0.98491 1.18524 0.88343 0.92253 0.92129 0.83559 0.76187 0.91262 0.92209 0.92362 0.89942 0.91215 0.92160 0.91894 0.92006 0.92093 0.96625 0.96569 0.78349 0.93600 0.83179 0.89923 0.90000 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.30 -3.04 10.47 -18.74 -0.20 -3.23 16 3 C 0.33 3.40 7.49 -17.16 -0.13 3.27 16 4 C -0.17 -1.58 9.55 -38.84 -0.37 -1.95 16 5 C -0.05 -0.49 5.91 -104.68 -0.62 -1.11 16 6 C 0.56 6.28 7.76 -12.18 -0.09 6.19 16 7 O -0.53 -7.42 16.11 5.35 0.09 -7.33 16 8 N -0.71 -6.59 4.49 -54.65 -0.25 -6.84 16 9 C 0.14 1.32 2.57 -67.93 -0.17 1.14 16 10 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 11 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 12 C -0.13 -1.21 4.75 -26.73 -0.13 -1.33 16 13 C -0.12 -1.40 5.10 -26.73 -0.14 -1.54 16 14 C -0.13 -1.98 5.33 -26.73 -0.14 -2.13 16 15 C 0.15 3.15 6.26 -4.04 -0.03 3.13 16 16 N -0.74 -19.31 5.60 -59.90 -0.34 -19.65 16 17 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 20 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 21 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 C -0.15 -1.46 9.30 -39.03 -0.36 -1.83 16 26 C 0.17 1.46 6.77 -82.65 -0.56 0.90 16 27 C -0.10 -0.58 10.16 36.01 0.37 -0.22 16 28 N -0.53 -5.35 9.09 -9.59 -0.09 -5.44 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.39 8.10 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.15 1.11 6.53 -52.48 -0.34 0.76 16 33 H 0.40 3.02 6.74 -40.82 -0.28 2.74 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 7.75 -51.93 -0.40 0.32 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.15 1.30 7.74 -52.48 -0.41 0.89 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 416.28 15.07 6.27 6.27 Total: -1.00 -34.85 416.28 -8.46 -43.31 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.44 Total: 5.95 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.22 Total: -2.76 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.06 Total: -60.02 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -0.11 Total: -10.56 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.85 -8.46 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174920703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.021 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds