Wall clock time and date at job start Tue Mar 31 2020 18:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35680 * 117.00246 * 2 1 4 4 C 1.38898 * 119.62779 * 179.97438 * 3 2 1 5 5 C 1.39568 * 118.94979 * 180.02562 * 4 3 2 6 6 C 1.48166 * 120.89178 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99748 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99901 * 0.02562 * 6 5 4 9 9 C 1.46496 * 119.99614 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47676 * 324.99283 * 9 8 6 11 11 C 1.52998 * 109.47575 * 84.99689 * 9 8 6 12 12 C 1.53002 * 109.47093 * 204.99616 * 9 8 6 13 13 C 1.52998 * 109.46814 * 64.99566 * 12 9 8 14 14 C 1.53002 * 109.46814 * 180.02562 * 13 12 9 15 15 C 1.53008 * 109.47177 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47112 * 180.02562 * 15 14 13 17 17 C 1.36935 * 119.99704 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00588 * 359.97438 * 17 16 15 19 19 C 1.38821 * 119.99823 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99716 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47258 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47108 * 119.99899 * 21 19 17 24 24 H 1.48511 * 109.46664 * 239.99904 * 21 19 17 25 25 C 1.39963 * 118.21562 * 0.25263 * 5 4 3 26 26 C 1.37975 * 119.13529 * 359.51995 * 25 5 4 27 27 C 1.50710 * 119.51501 * 180.20616 * 26 25 5 28 28 N 1.31908 * 120.97863 * 0.49689 * 26 25 5 29 29 H 1.08998 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46883 * 299.99536 * 1 2 3 31 31 H 1.09000 * 109.47212 * 59.99802 * 1 2 3 32 32 H 1.08003 * 120.52219 * 359.97438 * 4 3 2 33 33 H 0.96996 * 119.99887 * 359.97438 * 8 6 5 34 34 H 1.09002 * 109.47400 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47056 * 300.00185 * 11 9 8 36 36 H 1.08997 * 109.47198 * 59.99601 * 11 9 8 37 37 H 1.08997 * 109.47360 * 185.00182 * 12 9 8 38 38 H 1.09004 * 109.46912 * 305.00313 * 12 9 8 39 39 H 1.08997 * 109.47661 * 300.00432 * 13 12 9 40 40 H 1.09001 * 109.47386 * 60.01077 * 13 12 9 41 41 H 1.08996 * 109.47591 * 300.00118 * 14 13 12 42 42 H 1.09004 * 109.46912 * 60.00748 * 14 13 12 43 43 H 1.08996 * 109.47016 * 300.00543 * 15 14 13 44 44 H 1.09004 * 109.46530 * 60.00586 * 15 14 13 45 45 H 0.96994 * 120.00104 * 0.02562 * 16 15 14 46 46 H 0.96998 * 120.00356 * 180.02562 * 20 19 17 47 47 H 1.08010 * 120.43302 * 179.74639 * 25 5 4 48 48 H 1.08997 * 109.46982 * 270.28243 * 27 26 25 49 49 H 1.09002 * 109.46363 * 30.28089 * 27 26 25 50 50 H 1.09003 * 109.47038 * 150.27714 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 0.0005 5 6 4.0514 2.5235 0.0011 6 6 5.5284 2.6414 0.0022 7 8 6.0502 3.7389 0.0032 8 7 6.2930 1.5316 0.0023 9 6 7.7533 1.6483 0.0028 10 1 8.0488 2.5165 -0.5864 11 6 8.2513 1.8140 1.4400 12 6 8.3661 0.3858 -0.6068 13 6 7.9684 0.2866 -2.0808 14 6 8.5807 -0.9762 -2.6903 15 6 8.1825 -1.0758 -4.1643 16 7 8.7683 -2.2852 -4.7477 17 6 8.5474 -2.5859 -6.0652 18 1 7.9412 -1.9317 -6.6742 19 6 9.1020 -3.7323 -6.6179 20 7 9.8404 -4.5298 -5.8757 21 14 8.8002 -4.1428 -8.4151 22 1 7.9433 -3.0946 -9.0251 23 1 10.0982 -4.2021 -9.1341 24 1 8.1186 -5.4585 -8.5145 25 6 3.2394 3.6635 0.0065 26 6 1.8681 3.5115 0.0010 27 6 0.9857 4.7333 0.0020 28 7 1.3178 2.3127 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0230 0.3682 0.0014 33 1 5.8765 0.6556 0.0019 34 1 9.3378 1.9004 1.4404 35 1 7.8147 2.7134 1.8743 36 1 7.9559 0.9459 2.0292 37 1 9.4520 0.4334 -0.5257 38 1 7.9999 -0.4905 -0.0719 39 1 6.8825 0.2391 -2.1619 40 1 8.3347 1.1629 -2.6158 41 1 9.6666 -0.9291 -2.6093 42 1 8.2141 -1.8523 -2.1554 43 1 7.0966 -1.1231 -4.2449 44 1 8.5488 -0.1997 -4.6995 45 1 9.3124 -2.8730 -4.2007 46 1 10.2283 -5.3306 -6.2620 47 1 3.6806 4.6494 0.0112 48 1 0.7733 5.0272 1.0299 49 1 1.4944 5.5492 -0.5115 50 1 0.0513 4.5071 -0.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174920703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:02 Heat of formation + Delta-G solvation = -72.377213 kcal Electronic energy + Delta-G solvation = -28030.497354 eV Core-core repulsion = 24056.738203 eV Total energy + Delta-G solvation = -3973.759151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.04197 -40.78000 -39.01157 -38.04573 -36.86155 -34.96990 -34.38588 -32.89473 -32.76659 -31.50440 -29.32563 -28.82706 -27.58313 -26.08144 -25.49048 -23.80786 -23.64474 -22.08496 -21.89269 -21.49718 -19.56299 -19.13378 -18.19818 -17.85478 -17.16120 -17.10297 -16.76297 -16.66958 -16.29851 -16.06390 -15.50223 -15.36943 -15.29072 -15.19044 -14.99139 -14.58939 -14.35402 -14.19041 -14.05872 -13.41248 -13.33027 -13.25735 -13.09190 -13.02599 -12.90657 -12.86563 -12.68113 -12.46810 -12.30485 -12.12131 -12.04751 -11.89805 -11.82710 -11.54269 -11.41174 -11.36615 -11.03289 -10.95965 -10.78899 -10.17247 -9.55304 -9.02566 -7.97818 -5.26997 -0.46759 0.00300 1.45812 1.46926 1.57254 1.72113 1.87108 2.08854 2.54218 2.65538 3.06714 3.35534 3.45163 3.62467 3.77842 3.89842 3.98105 4.01518 4.05102 4.13369 4.33916 4.37969 4.40205 4.41646 4.42452 4.52344 4.60395 4.64589 4.74647 4.76566 4.77019 4.84420 4.87069 4.92015 4.96110 4.98370 5.00782 5.04504 5.09903 5.26823 5.32255 5.33946 5.40523 5.45198 5.52396 5.53635 6.11754 6.25418 6.37876 6.68114 7.02568 7.30999 8.07600 8.31177 9.26007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009815 B = 0.002215 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.044140 B =12636.891902 C =14428.017592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.310 3.690 4 C -0.167 4.167 5 C -0.058 4.058 6 C 0.562 3.438 7 O -0.561 6.561 8 N -0.702 5.702 9 C 0.143 3.857 10 H 0.075 0.925 11 C -0.158 4.158 12 C -0.117 4.117 13 C -0.107 4.107 14 C -0.112 4.112 15 C 0.147 3.853 16 N -0.749 5.749 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.077 4.077 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.290 1.290 25 C -0.161 4.161 26 C 0.161 3.839 27 C -0.103 4.103 28 N -0.536 5.536 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.163 0.837 33 H 0.412 0.588 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.013 0.987 45 H 0.374 0.626 46 H 0.252 0.748 47 H 0.155 0.845 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.505 16.895 20.192 31.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.131 3.869 4 C -0.188 4.188 5 C -0.068 4.068 6 C 0.349 3.651 7 O -0.441 6.441 8 N -0.354 5.354 9 C 0.039 3.961 10 H 0.093 0.907 11 C -0.216 4.216 12 C -0.155 4.155 13 C -0.145 4.145 14 C -0.150 4.150 15 C 0.021 3.979 16 N -0.392 5.392 17 C -0.381 4.381 18 H 0.090 0.910 19 C -0.269 4.269 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.182 4.182 26 C 0.025 3.975 27 C -0.160 4.160 28 N -0.262 5.262 29 H 0.139 0.861 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.180 0.820 33 H 0.250 0.750 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.031 0.969 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.173 0.827 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.977 17.341 20.024 32.013 hybrid contribution 0.671 -1.004 -0.960 1.543 sum -17.307 16.337 19.063 30.493 Atomic orbital electron populations 1.23084 0.75548 1.04744 1.02434 1.86255 1.24595 1.23892 1.87600 1.19839 0.89439 0.85085 0.92492 1.21319 0.92528 0.98817 1.06173 1.20156 0.93382 0.93810 0.99498 1.18188 0.86244 0.84541 0.76160 1.90764 1.74737 1.27516 1.51066 1.46020 1.07411 1.08844 1.73147 1.21088 0.78123 0.99318 0.97576 0.90694 1.22126 1.02318 1.02025 0.95141 1.21866 1.02254 0.96852 0.94537 1.21445 1.00654 0.96604 0.95800 1.21599 1.00749 0.98746 0.93910 1.20864 0.95340 0.88063 0.93625 1.42633 1.61294 1.26069 1.09173 1.19682 1.25079 1.04987 0.88309 0.90954 1.25617 1.00847 0.97874 1.02612 1.69815 1.39580 1.15646 1.36932 0.85046 0.77164 0.77662 0.79723 1.19197 1.21776 1.21714 1.22087 0.93634 0.99957 1.02549 1.21422 0.91949 0.92519 0.91609 1.20878 0.98770 0.91681 1.04641 1.67072 1.41520 0.98848 1.18795 0.86149 0.92015 0.92438 0.81982 0.75017 0.90120 0.93626 0.91148 0.89046 0.89705 0.91848 0.92402 0.92224 0.91855 0.96610 0.96892 0.79370 0.93870 0.82727 0.88530 0.88539 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 113.37 1.18 1.66 16 2 O -0.32 -6.10 10.47 -89.98 -0.94 -7.04 16 3 C 0.31 6.30 7.49 84.80 0.63 6.94 16 4 C -0.17 -3.06 9.55 22.75 0.22 -2.85 16 5 C -0.06 -1.15 5.91 -19.90 -0.12 -1.27 16 6 C 0.56 12.34 7.76 86.88 0.67 13.01 16 7 O -0.56 -15.88 16.11 -3.77 -0.06 -15.94 16 8 N -0.70 -12.16 4.49 -445.11 -2.00 -14.16 16 9 C 0.14 2.48 2.57 44.99 0.12 2.60 16 10 H 0.07 1.60 7.58 -2.39 -0.02 1.59 16 11 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 12 C -0.12 -1.95 4.75 30.59 0.15 -1.81 16 13 C -0.11 -2.43 5.10 30.59 0.16 -2.28 16 14 C -0.11 -3.41 5.33 30.60 0.16 -3.25 16 15 C 0.15 6.04 6.26 86.38 0.54 6.59 16 16 N -0.75 -39.45 5.60 -343.44 -1.92 -41.38 16 17 C -0.25 -14.38 9.99 84.04 0.84 -13.54 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.08 -4.54 5.50 84.87 0.47 -4.07 16 20 N -0.97 -60.14 13.06 21.65 0.28 -59.86 16 21 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 25 C -0.16 -2.98 9.30 22.63 0.21 -2.77 16 26 C 0.16 2.73 6.77 42.49 0.29 3.02 16 27 C -0.10 -0.99 10.16 71.24 0.72 -0.27 16 28 N -0.54 -10.55 9.09 -297.16 -2.70 -13.26 16 29 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 31 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.16 2.25 6.53 -2.91 -0.02 2.24 16 33 H 0.41 5.46 6.74 -92.71 -0.62 4.83 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.41 7.75 -2.39 -0.02 1.39 16 40 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.37 20.67 7.67 -92.71 -0.71 19.95 16 46 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 47 H 0.16 2.64 7.74 -2.91 -0.02 2.61 16 48 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.10 0.65 8.08 -2.39 -0.02 0.63 16 50 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -74.57 416.28 1.20 -73.37 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.40 Total: 29.36 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.92 Total: 0.02 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -6.34 Total: -128.65 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -1.00 Total: -22.98 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.57 1.20 -73.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174920703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.991 kcal (2) G-P(sol) polarization free energy of solvation -74.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds