Wall clock time and date at job start Tue Mar 31 2020 19:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38000 * 120.81737 * 2 1 4 4 C 1.39126 * 119.26175 * 180.02562 * 3 2 1 5 5 O 1.35497 * 119.52507 * 179.97438 * 4 3 2 6 6 N 1.32434 * 120.95217 * 0.02562 * 4 3 2 7 7 C 1.31640 * 121.80131 * 359.97438 * 6 4 3 8 8 C 1.50694 * 119.68933 * 179.97438 * 7 6 4 9 9 C 1.39567 * 120.62003 * 359.97438 * 7 6 4 10 10 C 1.47616 * 120.49716 * 179.97438 * 9 7 6 11 11 O 1.21587 * 120.00402 * 270.04949 * 10 9 7 12 12 N 1.34779 * 119.99556 * 90.04622 * 10 9 7 13 13 C 1.46501 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47542 * 325.00352 * 13 12 10 15 15 C 1.53007 * 109.47255 * 85.00029 * 13 12 10 16 16 C 1.53001 * 109.47315 * 205.00286 * 13 12 10 17 17 C 1.52998 * 109.47314 * 64.99644 * 16 13 12 18 18 C 1.52996 * 109.47262 * 180.02562 * 17 16 13 19 19 C 1.52998 * 109.46930 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.47295 * 179.97438 * 19 18 17 21 21 C 1.36936 * 120.00196 * 180.02562 * 20 19 18 22 22 H 1.07998 * 120.00301 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99720 * 180.02562 * 21 20 19 24 24 N 1.31615 * 119.99866 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00378 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.47001 * 89.99910 * 25 23 21 27 27 H 1.48489 * 109.47344 * 210.00509 * 25 23 21 28 28 H 1.48503 * 109.47029 * 330.00821 * 25 23 21 29 29 H 1.09008 * 109.46507 * 90.00322 * 1 2 3 30 30 H 1.08995 * 109.47633 * 210.00111 * 1 2 3 31 31 H 1.09003 * 109.47431 * 330.00519 * 1 2 3 32 32 H 1.07992 * 120.36859 * 0.04054 * 3 2 1 33 33 H 0.96703 * 113.99869 * 270.02078 * 5 4 3 34 34 H 1.09000 * 109.47208 * 90.00075 * 8 7 6 35 35 H 1.09003 * 109.47151 * 210.00001 * 8 7 6 36 36 H 1.08998 * 109.47545 * 329.99947 * 8 7 6 37 37 H 0.96997 * 120.00190 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.46560 * 60.00194 * 15 13 12 39 39 H 1.09000 * 109.46810 * 179.97438 * 15 13 12 40 40 H 1.09002 * 109.47109 * 300.00030 * 15 13 12 41 41 H 1.09001 * 109.47649 * 185.00193 * 16 13 12 42 42 H 1.09001 * 109.46819 * 305.00268 * 16 13 12 43 43 H 1.09001 * 109.47211 * 300.00817 * 17 16 13 44 44 H 1.09001 * 109.46668 * 60.00532 * 17 16 13 45 45 H 1.09001 * 109.46931 * 300.00109 * 18 17 16 46 46 H 1.09001 * 109.47121 * 60.00471 * 18 17 16 47 47 H 1.09001 * 109.47253 * 299.99729 * 19 18 17 48 48 H 1.09003 * 109.47479 * 60.00053 * 19 18 17 49 49 H 0.97000 * 119.99668 * 0.02562 * 20 19 18 50 50 H 0.97000 * 119.99847 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1852 0.0000 4 6 3.6047 1.1474 -0.0005 5 8 4.3042 2.3078 -0.0011 6 7 4.2548 -0.0064 -0.0016 7 6 3.6205 -1.1600 -0.0016 8 6 4.4081 -2.4447 -0.0034 9 6 2.2256 -1.2043 0.0000 10 6 1.5171 -2.4993 -0.0007 11 8 1.2249 -3.0320 -1.0538 12 7 1.1943 -3.0913 1.1663 13 6 0.4918 -4.3769 1.1658 14 1 -0.2000 -4.4126 0.3241 15 6 1.5081 -5.5135 1.0391 16 6 -0.2875 -4.5328 2.4732 17 6 -1.3867 -3.4708 2.5416 18 6 -2.1655 -3.6264 3.8493 19 6 -3.2651 -2.5648 3.9173 20 7 -4.0114 -2.7141 5.1692 21 6 -5.0509 -1.8687 5.4517 22 1 -5.3210 -1.0921 4.7515 23 6 -5.7575 -2.0099 6.6382 24 7 -6.7570 -1.1977 6.9095 25 14 -5.2909 -3.3535 7.8491 26 1 -4.2798 -2.8309 8.8030 27 1 -6.4984 -3.7878 8.5962 28 1 -4.7231 -4.5100 7.1106 29 1 -0.3632 -0.0001 -1.0278 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6935 2.1314 0.0007 33 1 4.5066 2.6446 -0.8847 34 1 4.5992 -2.7552 1.0238 35 1 3.8386 -3.2193 -0.5171 36 1 5.3562 -2.2891 -0.5182 37 1 1.4271 -2.6662 2.0065 38 1 2.1998 -5.4778 1.8808 39 1 0.9854 -6.4700 1.0391 40 1 2.0633 -5.4024 0.1076 41 1 -0.7377 -5.5248 2.5118 42 1 0.3907 -4.4085 3.3174 43 1 -0.9365 -2.4789 2.5030 44 1 -2.0650 -3.5952 1.6974 45 1 -2.6157 -4.6184 3.8882 46 1 -1.4871 -3.5019 4.6933 47 1 -2.8153 -1.5727 3.8782 48 1 -3.9436 -2.6897 3.0733 49 1 -3.7690 -3.4118 5.7980 50 1 -7.2505 -1.2961 7.7387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176685708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:46 Heat of formation + Delta-G solvation = -83.279605 kcal Electronic energy + Delta-G solvation = -28705.121897 eV Core-core repulsion = 24730.889983 eV Total energy + Delta-G solvation = -3974.231914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.08614 -40.57775 -38.39088 -37.93078 -36.91995 -35.41129 -34.78679 -33.45689 -32.83262 -31.59647 -29.13678 -29.06094 -28.72949 -25.85254 -25.00031 -23.49429 -22.46263 -22.27831 -22.04190 -21.55690 -19.63149 -19.51220 -18.82705 -18.29648 -17.52659 -16.75053 -16.63354 -16.34504 -15.90865 -15.75768 -15.52652 -15.26260 -14.88656 -14.76901 -14.63624 -14.37142 -14.27320 -14.22322 -14.13585 -13.88000 -13.51334 -13.36865 -13.17149 -13.09334 -12.96022 -12.94110 -12.90336 -12.64937 -12.44498 -12.30886 -12.05348 -11.88235 -11.78041 -11.51678 -11.42930 -11.24538 -10.97156 -10.67199 -10.56176 -10.14170 -9.91074 -9.30946 -8.04105 -5.38124 -0.36017 0.01449 1.37517 1.41001 1.42020 1.49640 2.07821 2.26074 2.48174 2.60660 3.27126 3.35882 3.41585 3.48843 3.63303 3.91747 3.94753 4.03587 4.09044 4.15919 4.24857 4.35426 4.38079 4.41495 4.50994 4.57075 4.58855 4.60693 4.65654 4.76024 4.82113 4.89162 4.92851 4.94898 4.98990 5.03664 5.06623 5.08367 5.12787 5.26998 5.35288 5.38563 5.42112 5.51476 5.56247 5.74105 6.20355 6.42390 6.52028 6.76698 7.07153 7.09682 7.83700 8.03401 9.17549 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.002342 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.681579 B =11952.923819 C =13388.346652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.011 3.989 3 C -0.194 4.194 4 C 0.328 3.672 5 O -0.488 6.488 6 N -0.530 5.530 7 C 0.186 3.814 8 C -0.109 4.109 9 C -0.209 4.209 10 C 0.583 3.417 11 O -0.567 6.567 12 N -0.702 5.702 13 C 0.142 3.858 14 H 0.073 0.927 15 C -0.159 4.159 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.117 4.117 19 C 0.150 3.850 20 N -0.761 5.761 21 C -0.240 4.240 22 H 0.053 0.947 23 C -0.068 4.068 24 N -0.985 5.985 25 Si 0.961 3.039 26 H -0.276 1.276 27 H -0.295 1.295 28 H -0.249 1.249 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.424 0.576 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.021 0.979 48 H 0.016 0.984 49 H 0.367 0.633 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.517 -3.316 -16.502 31.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.003 3.997 3 C -0.214 4.214 4 C 0.150 3.850 5 O -0.299 6.299 6 N -0.251 5.251 7 C 0.047 3.953 8 C -0.166 4.166 9 C -0.215 4.215 10 C 0.368 3.632 11 O -0.447 6.447 12 N -0.353 5.353 13 C 0.038 3.962 14 H 0.091 0.909 15 C -0.217 4.217 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.155 4.155 19 C 0.024 3.976 20 N -0.407 5.407 21 C -0.371 4.371 22 H 0.071 0.929 23 C -0.259 4.259 24 N -0.636 5.636 25 Si 0.787 3.213 26 H -0.202 1.202 27 H -0.222 1.222 28 H -0.173 1.173 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.187 0.813 33 H 0.286 0.714 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.248 0.752 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.039 0.961 48 H 0.035 0.965 49 H 0.200 0.800 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 27.037 -3.506 -16.711 31.977 hybrid contribution -1.045 0.205 0.618 1.231 sum 25.992 -3.301 -16.094 30.749 Atomic orbital electron populations 1.21004 0.88363 1.04720 1.04120 1.20434 0.97624 0.90864 0.90729 1.22114 0.93420 1.00203 1.05710 1.19467 0.87632 0.85181 0.92695 1.84679 1.75799 1.33322 1.36095 1.67025 1.42482 0.98417 1.17151 1.21298 0.89301 0.93705 0.90960 1.20889 1.00372 0.90610 1.04729 1.20707 0.95059 0.94380 1.11313 1.17870 0.77625 0.83613 0.84046 1.90809 1.55325 1.65973 1.32544 1.46124 1.58206 1.22787 1.08160 1.21086 0.93759 0.82254 0.99103 0.90917 1.22134 0.99391 0.98084 1.02086 1.21862 0.96991 1.00351 0.96282 1.21455 0.97177 0.99743 0.96313 1.21667 0.96552 0.98326 0.98925 1.20854 0.92473 0.97458 0.86796 1.42775 1.37856 1.38275 1.21830 1.19064 1.06681 1.08928 1.02426 0.92930 1.25610 0.98055 1.01922 1.00341 1.69898 1.24841 1.42248 1.26576 0.85322 0.77192 0.79822 0.78931 1.20171 1.22207 1.17319 0.89309 0.91221 0.88402 0.81312 0.71352 0.88026 0.90676 0.89150 0.75211 0.90979 0.90351 0.93546 0.89067 0.89693 0.91715 0.92340 0.91655 0.91214 0.96066 0.96546 0.79977 0.93272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.69 71.23 0.69 -1.24 16 2 C 0.01 0.20 5.95 -19.44 -0.12 0.08 16 3 C -0.19 -3.02 9.73 22.43 0.22 -2.80 16 4 C 0.33 5.91 7.74 84.82 0.66 6.57 16 5 O -0.49 -7.02 13.55 -87.98 -1.19 -8.21 16 6 N -0.53 -10.98 10.28 -295.89 -3.04 -14.02 16 7 C 0.19 3.55 6.82 42.91 0.29 3.84 16 8 C -0.11 -1.56 9.78 71.23 0.70 -0.86 16 9 C -0.21 -4.03 5.65 -20.00 -0.11 -4.14 16 10 C 0.58 11.75 4.29 86.72 0.37 12.12 16 11 O -0.57 -15.61 16.76 -3.99 -0.07 -15.68 16 12 N -0.70 -10.52 4.53 -445.60 -2.02 -12.54 16 13 C 0.14 2.08 2.57 44.99 0.12 2.19 16 14 H 0.07 1.38 7.58 -2.39 -0.02 1.37 16 15 C -0.16 -1.97 9.48 71.98 0.68 -1.29 16 16 C -0.12 -1.55 4.75 30.59 0.15 -1.41 16 17 C -0.11 -2.05 5.10 30.59 0.16 -1.89 16 18 C -0.12 -2.96 5.33 30.59 0.16 -2.80 16 19 C 0.15 5.53 6.26 86.38 0.54 6.07 16 20 N -0.76 -35.68 5.41 -343.44 -1.86 -37.53 16 21 C -0.24 -13.93 10.47 84.03 0.88 -13.05 16 22 H 0.05 3.36 8.06 -2.91 -0.02 3.33 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 24 N -0.99 -63.68 13.97 21.65 0.30 -63.38 16 25 Si 0.96 45.16 27.74 68.60 1.90 47.07 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 29 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.07 1.18 7.19 -2.39 -0.02 1.16 16 31 H 0.10 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 33 H 0.42 1.68 9.06 -74.06 -0.67 1.01 16 34 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.16 7.06 -2.39 -0.02 1.14 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.41 4.81 8.59 -92.71 -0.80 4.01 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 41 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 1.19 7.75 -2.39 -0.02 1.17 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.37 16.09 5.53 -92.71 -0.51 15.58 16 50 H 0.26 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -79.82 413.21 -1.20 -81.02 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -1.08 Total: 25.45 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 5.85 Total: -2.18 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -6.61 Total: -127.48 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -1.26 Total: -23.89 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.07 kcal Total: -79.82 -1.20 -81.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176685708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.258 kcal (2) G-P(sol) polarization free energy of solvation -79.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds