Wall clock time and date at job start Tue Mar 31 2020 19:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99846 * 2 1 4 4 C 1.38848 * 120.40300 * 0.02562 * 3 2 1 5 5 N 1.31879 * 120.99430 * 179.71494 * 4 3 2 6 6 C 1.31683 * 121.94743 * 0.28224 * 5 4 3 7 7 C 1.39526 * 120.68659 * 359.97114 * 6 5 4 8 8 C 1.47861 * 120.53018 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99664 * 173.91868 * 8 7 6 10 10 N 1.34774 * 119.99747 * 353.92814 * 8 7 6 11 11 C 1.46499 * 119.99460 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.47049 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46587 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47135 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47243 * 180.02562 * 16 15 14 18 18 C 1.36933 * 120.00397 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00293 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47206 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47326 * 119.99933 * 22 20 18 25 25 H 1.48499 * 109.47511 * 240.00221 * 22 20 18 26 26 C 1.38843 * 120.40477 * 180.25027 * 3 2 1 27 27 C 1.50701 * 120.88148 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.46927 * 299.99258 * 1 2 3 29 29 H 1.08993 * 109.47139 * 59.99909 * 1 2 3 30 30 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.50210 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.65654 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00489 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47618 * 300.00007 * 11 10 8 35 35 H 1.08998 * 109.47647 * 60.00300 * 11 10 8 36 36 H 1.08996 * 109.46567 * 300.00290 * 12 11 10 37 37 H 1.08998 * 109.46579 * 59.99735 * 12 11 10 38 38 H 1.09005 * 109.47609 * 299.99256 * 13 12 11 39 39 H 1.08998 * 109.47773 * 60.00387 * 13 12 11 40 40 H 1.08999 * 109.47345 * 299.99776 * 14 13 12 41 41 H 1.09001 * 109.47002 * 60.00465 * 14 13 12 42 42 H 1.08999 * 109.47157 * 300.00213 * 15 14 13 43 43 H 1.09006 * 109.46551 * 60.00063 * 15 14 13 44 44 H 1.09008 * 109.47074 * 299.99947 * 16 15 14 45 45 H 1.08999 * 109.47450 * 60.00199 * 16 15 14 46 46 H 0.97002 * 120.00279 * 359.97438 * 17 16 15 47 47 H 0.97005 * 120.00027 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47324 * 263.93612 * 27 26 3 49 49 H 1.09000 * 109.47287 * 23.93393 * 27 26 3 50 50 H 1.08996 * 109.47311 * 143.93921 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5620 0.0062 6 6 3.1952 3.6892 0.0060 7 6 4.0198 2.5637 0.0004 8 6 5.4911 2.7105 -0.0004 9 8 6.1998 1.7287 0.1063 10 7 6.0463 3.9328 -0.1191 11 6 7.5040 4.0782 -0.1192 12 6 7.8691 5.5568 -0.2666 13 6 9.3915 5.7086 -0.2674 14 6 9.7564 7.1872 -0.4140 15 6 11.2789 7.3392 -0.4142 16 6 11.6438 8.8177 -0.5615 17 7 13.1016 8.9631 -0.5623 18 6 13.6657 10.2050 -0.6830 19 1 13.0360 11.0772 -0.7781 20 6 15.0470 10.3428 -0.6832 21 7 15.8145 9.2798 -0.5679 22 14 15.8165 12.0369 -0.8486 23 1 14.7448 13.0584 -0.9632 24 1 16.6462 12.3229 0.3494 25 1 16.6704 12.0764 -2.0630 26 6 3.4320 1.2936 -0.0052 27 6 4.2810 0.0485 -0.0104 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2197 2.3225 0.0005 32 1 3.6365 4.6749 0.0103 33 1 5.4807 4.7162 -0.2044 34 1 7.9075 3.6957 0.8183 35 1 7.9253 3.5157 -0.9524 36 1 7.4656 5.9389 -1.2043 37 1 7.4478 6.1197 0.5664 38 1 9.7953 5.3264 0.6702 39 1 9.8124 5.1458 -1.1005 40 1 9.3526 7.5699 -1.3514 41 1 9.3356 7.7497 0.4195 42 1 11.6823 6.9566 0.5233 43 1 11.7000 6.7765 -1.2475 44 1 11.2404 9.1998 -1.4993 45 1 11.2227 9.3807 0.2714 46 1 13.6672 8.1798 -0.4766 47 1 16.7797 9.3762 -0.5677 48 1 4.5794 -0.1921 1.0100 49 1 3.7081 -0.7802 -0.4264 50 1 5.1697 0.2172 -0.6185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178822792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:17 Heat of formation + Delta-G solvation = -48.843464 kcal Electronic energy + Delta-G solvation = -26818.923942 eV Core-core repulsion = 22846.185291 eV Total energy + Delta-G solvation = -3972.738651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57371 -39.96471 -38.47616 -36.91316 -35.56216 -34.21927 -33.98237 -32.21409 -31.21931 -29.88436 -28.37752 -28.21821 -26.91198 -24.75231 -23.81252 -22.89075 -22.14739 -21.49020 -20.75758 -20.65277 -18.81539 -18.00391 -17.03187 -16.92489 -16.84843 -16.62689 -16.28052 -16.07543 -15.44445 -14.78475 -14.67996 -14.58071 -14.34835 -13.96948 -13.57836 -13.43623 -13.39067 -13.23723 -13.20063 -12.91775 -12.72747 -12.66305 -12.43657 -12.26023 -12.08424 -11.73572 -11.37352 -11.18789 -10.92529 -10.74238 -10.72129 -10.57676 -10.37114 -10.25458 -10.06542 -9.94776 -9.82214 -9.63084 -9.43282 -9.05550 -8.83814 -6.87538 -5.73123 -3.01426 0.03870 0.63780 2.34691 2.38820 2.81280 3.24046 3.45406 3.50680 3.53237 3.73430 3.90895 4.13309 4.18291 4.38284 4.48504 4.50304 4.58956 4.66087 4.67185 4.73165 4.87782 4.93569 5.04911 5.19519 5.22036 5.35444 5.38421 5.39778 5.55959 5.62670 5.63543 5.66614 5.70107 5.71093 5.91296 5.95683 5.98909 6.09994 6.13578 6.34457 6.35160 6.42635 6.49755 6.52577 6.93073 6.97097 7.01232 7.24288 7.73541 7.73609 8.46300 9.57038 10.16788 10.51213 11.50122 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.043194 B = 0.001226 C = 0.001195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.087645 B =22832.128634 C =23421.368531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.066 3.934 4 C 0.041 3.959 5 N -0.456 5.456 6 C 0.102 3.898 7 C -0.156 4.156 8 C 0.562 3.438 9 O -0.523 6.523 10 N -0.723 5.723 11 C 0.118 3.882 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.011 4.011 27 C -0.115 4.115 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.400 0.600 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.469 -20.072 1.322 40.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.217 6.217 3 C 0.019 3.981 4 C -0.116 4.116 5 N -0.165 5.165 6 C -0.058 4.058 7 C -0.161 4.161 8 C 0.349 3.651 9 O -0.401 6.401 10 N -0.375 5.375 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.020 4.020 27 C -0.171 4.171 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -35.370 -20.063 1.382 40.687 hybrid contribution 0.552 0.564 -0.079 0.793 sum -34.818 -19.499 1.303 39.928 Atomic orbital electron populations 1.23181 0.77683 1.04738 1.01679 1.86112 1.21745 1.25373 1.88457 1.19786 0.92343 0.86180 0.99809 1.23112 1.00839 0.87020 1.00582 1.67537 1.11829 1.26018 1.11112 1.22842 0.88809 0.98013 0.96121 1.20714 0.94684 0.93882 1.06845 1.17910 0.86753 0.83511 0.76964 1.90770 1.63097 1.37300 1.48889 1.45958 1.08669 1.08336 1.74490 1.21518 0.78597 0.97531 1.02879 1.21845 0.97965 0.94365 1.02811 1.21515 0.93497 0.97764 1.02638 1.21503 0.96694 0.95098 1.01857 1.21732 0.94438 0.98331 1.01968 1.20659 0.86541 0.92879 0.97488 1.42404 1.00040 1.06912 1.88581 1.19307 0.90053 0.85897 1.41706 0.91169 1.24746 0.96115 0.97177 1.03118 1.69676 1.03596 1.27354 1.57723 0.86115 0.79153 0.83693 0.77246 1.20556 1.21872 1.21867 1.19867 0.90851 0.95956 0.95279 1.20935 0.99511 0.92527 1.04083 0.92219 0.92231 0.87590 0.81961 0.82105 0.76431 0.90980 0.91004 0.91166 0.91154 0.91579 0.91578 0.92079 0.92079 0.92081 0.92088 0.96588 0.96587 0.78340 0.93598 0.90045 0.91292 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -2.01 9.57 -19.50 -0.19 -2.20 16 3 C 0.07 0.51 6.68 -39.13 -0.26 0.25 16 4 C 0.04 0.29 10.21 -17.31 -0.18 0.11 16 5 N -0.46 -3.73 10.34 -12.80 -0.13 -3.86 16 6 C 0.10 0.74 10.69 -17.14 -0.18 0.55 16 7 C -0.16 -1.33 5.89 -104.84 -0.62 -1.94 16 8 C 0.56 5.34 7.72 -12.32 -0.10 5.24 16 9 O -0.52 -6.50 13.50 5.32 0.07 -6.43 16 10 N -0.72 -5.21 5.51 -61.24 -0.34 -5.55 16 11 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 12 C -0.13 -0.96 5.33 -26.73 -0.14 -1.10 16 13 C -0.12 -1.11 5.21 -26.73 -0.14 -1.25 16 14 C -0.11 -1.35 5.21 -26.73 -0.14 -1.49 16 15 C -0.13 -2.04 5.33 -26.73 -0.14 -2.19 16 16 C 0.15 3.14 6.26 -4.05 -0.03 3.11 16 17 N -0.74 -19.39 5.60 -59.91 -0.34 -19.72 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 C -0.01 -0.09 5.97 -103.76 -0.62 -0.71 16 27 C -0.11 -0.99 8.70 36.01 0.31 -0.68 16 28 H 0.06 0.09 7.67 -51.93 -0.40 -0.31 16 29 H 0.06 0.09 7.67 -51.93 -0.40 -0.31 16 30 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.16 0.65 6.30 -52.49 -0.33 0.32 16 32 H 0.16 0.69 6.46 -52.49 -0.34 0.35 16 33 H 0.40 1.83 6.57 -40.82 -0.27 1.56 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.38 10.56 7.67 -40.82 -0.31 10.24 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.53 7.45 -51.93 -0.39 0.14 16 50 H 0.10 0.99 5.95 -51.93 -0.31 0.68 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -35.31 408.53 -8.78 -44.09 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.21 Total: 3.69 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.51 Total: -5.75 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.08 Total: -57.30 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: -0.11 Total: -8.63 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.31 -8.78 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178822792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.757 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds