Wall clock time and date at job start Tue Mar 31 2020 19:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35925 * 116.99846 * 2 1 4 4 C 1.38848 * 120.40300 * 0.02562 * 3 2 1 5 5 N 1.31879 * 120.99430 * 179.71494 * 4 3 2 6 6 C 1.31683 * 121.94743 * 0.28224 * 5 4 3 7 7 C 1.39526 * 120.68659 * 359.97114 * 6 5 4 8 8 C 1.47861 * 120.53018 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99664 * 173.91868 * 8 7 6 10 10 N 1.34774 * 119.99747 * 353.92814 * 8 7 6 11 11 C 1.46499 * 119.99460 * 179.97438 * 10 8 7 12 12 C 1.53010 * 109.47049 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.46926 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.46587 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46988 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.47135 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.47243 * 180.02562 * 16 15 14 18 18 C 1.36933 * 120.00397 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00293 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99995 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99995 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47206 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47326 * 119.99933 * 22 20 18 25 25 H 1.48499 * 109.47511 * 240.00221 * 22 20 18 26 26 C 1.38843 * 120.40477 * 180.25027 * 3 2 1 27 27 C 1.50701 * 120.88148 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.46927 * 299.99258 * 1 2 3 29 29 H 1.08993 * 109.47139 * 59.99909 * 1 2 3 30 30 H 1.09001 * 109.47196 * 179.97438 * 1 2 3 31 31 H 1.07993 * 119.50210 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.65654 * 179.97438 * 6 5 4 33 33 H 0.96997 * 120.00489 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.47618 * 300.00007 * 11 10 8 35 35 H 1.08998 * 109.47647 * 60.00300 * 11 10 8 36 36 H 1.08996 * 109.46567 * 300.00290 * 12 11 10 37 37 H 1.08998 * 109.46579 * 59.99735 * 12 11 10 38 38 H 1.09005 * 109.47609 * 299.99256 * 13 12 11 39 39 H 1.08998 * 109.47773 * 60.00387 * 13 12 11 40 40 H 1.08999 * 109.47345 * 299.99776 * 14 13 12 41 41 H 1.09001 * 109.47002 * 60.00465 * 14 13 12 42 42 H 1.08999 * 109.47157 * 300.00213 * 15 14 13 43 43 H 1.09006 * 109.46551 * 60.00063 * 15 14 13 44 44 H 1.09008 * 109.47074 * 299.99947 * 16 15 14 45 45 H 1.08999 * 109.47450 * 60.00199 * 16 15 14 46 46 H 0.97002 * 120.00279 * 359.97438 * 17 16 15 47 47 H 0.97005 * 120.00027 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.47324 * 263.93612 * 27 26 3 49 49 H 1.09000 * 109.47287 * 23.93393 * 27 26 3 50 50 H 1.08996 * 109.47311 * 143.93921 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5620 0.0062 6 6 3.1952 3.6892 0.0060 7 6 4.0198 2.5637 0.0004 8 6 5.4911 2.7105 -0.0004 9 8 6.1998 1.7287 0.1063 10 7 6.0463 3.9328 -0.1191 11 6 7.5040 4.0782 -0.1192 12 6 7.8691 5.5568 -0.2666 13 6 9.3915 5.7086 -0.2674 14 6 9.7564 7.1872 -0.4140 15 6 11.2789 7.3392 -0.4142 16 6 11.6438 8.8177 -0.5615 17 7 13.1016 8.9631 -0.5623 18 6 13.6657 10.2050 -0.6830 19 1 13.0360 11.0772 -0.7781 20 6 15.0470 10.3428 -0.6832 21 7 15.8145 9.2798 -0.5679 22 14 15.8165 12.0369 -0.8486 23 1 14.7448 13.0584 -0.9632 24 1 16.6462 12.3229 0.3494 25 1 16.6704 12.0764 -2.0630 26 6 3.4320 1.2936 -0.0052 27 6 4.2810 0.0485 -0.0104 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2197 2.3225 0.0005 32 1 3.6365 4.6749 0.0103 33 1 5.4807 4.7162 -0.2044 34 1 7.9075 3.6957 0.8183 35 1 7.9253 3.5157 -0.9524 36 1 7.4656 5.9389 -1.2043 37 1 7.4478 6.1197 0.5664 38 1 9.7953 5.3264 0.6702 39 1 9.8124 5.1458 -1.1005 40 1 9.3526 7.5699 -1.3514 41 1 9.3356 7.7497 0.4195 42 1 11.6823 6.9566 0.5233 43 1 11.7000 6.7765 -1.2475 44 1 11.2404 9.1998 -1.4993 45 1 11.2227 9.3807 0.2714 46 1 13.6672 8.1798 -0.4766 47 1 16.7797 9.3762 -0.5677 48 1 4.5794 -0.1921 1.0100 49 1 3.7081 -0.7802 -0.4264 50 1 5.1697 0.2172 -0.6185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178822792.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:16 Heat of formation + Delta-G solvation = -72.849674 kcal Electronic energy + Delta-G solvation = -26819.964930 eV Core-core repulsion = 22846.185291 eV Total energy + Delta-G solvation = -3973.779638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.13254 -40.59547 -38.97565 -37.91568 -36.83660 -35.43969 -34.72216 -33.62721 -32.22672 -31.12827 -29.08058 -28.52663 -28.09268 -25.95796 -24.88260 -23.78495 -23.15089 -22.25207 -22.01288 -21.49971 -19.37514 -19.09722 -18.54532 -17.49789 -17.38506 -17.15375 -16.93097 -16.80423 -16.61766 -16.31443 -15.49099 -15.39371 -15.27407 -15.17627 -14.93530 -14.67286 -14.11752 -14.01107 -13.86872 -13.84456 -13.73458 -13.43041 -13.16424 -13.02157 -12.94590 -12.75018 -12.65086 -12.38700 -12.36722 -12.10863 -11.99553 -11.79138 -11.77897 -11.46381 -11.31718 -11.17990 -10.94092 -10.70771 -10.46726 -10.09277 -9.55515 -9.01021 -7.96308 -5.25739 -0.54390 0.07203 1.47115 1.48465 1.58781 1.70574 1.85827 2.30425 2.55912 2.65779 3.26066 3.37500 3.39489 3.59290 3.61580 3.75355 3.95274 4.04203 4.04880 4.10519 4.27342 4.31578 4.33161 4.37169 4.38802 4.52206 4.61840 4.62131 4.66783 4.69316 4.76327 4.80141 4.87362 4.99222 5.00128 5.03118 5.08829 5.12082 5.18192 5.31256 5.31341 5.39536 5.44420 5.49025 5.56021 5.59059 6.11769 6.26715 6.42193 6.70365 7.08972 7.32076 8.09400 8.32065 9.27834 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.043194 B = 0.001226 C = 0.001195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.087645 B =22832.128634 C =23421.368531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.065 3.935 4 C 0.045 3.955 5 N -0.471 5.471 6 C 0.104 3.896 7 C -0.165 4.165 8 C 0.560 3.440 9 O -0.561 6.561 10 N -0.709 5.709 11 C 0.121 3.879 12 C -0.119 4.119 13 C -0.113 4.113 14 C -0.104 4.104 15 C -0.117 4.117 16 C 0.147 3.853 17 N -0.751 5.751 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.034 4.034 27 C -0.106 4.106 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.191 0.809 32 H 0.189 0.811 33 H 0.415 0.585 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.373 0.627 47 H 0.252 0.748 48 H 0.074 0.926 49 H 0.074 0.926 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.981 -18.894 1.218 42.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.017 3.983 4 C -0.112 4.112 5 N -0.181 5.181 6 C -0.055 4.055 7 C -0.170 4.170 8 C 0.347 3.653 9 O -0.441 6.441 10 N -0.361 5.361 11 C -0.002 4.002 12 C -0.157 4.157 13 C -0.151 4.151 14 C -0.142 4.142 15 C -0.155 4.155 16 C 0.021 3.979 17 N -0.394 5.394 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.043 4.043 27 C -0.162 4.162 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.140 0.860 31 H 0.208 0.792 32 H 0.206 0.794 33 H 0.253 0.747 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.204 0.796 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.093 0.907 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -37.947 -18.849 1.272 42.390 hybrid contribution 1.222 0.151 -0.047 1.232 sum -36.725 -18.698 1.226 41.229 Atomic orbital electron populations 1.23501 0.75578 1.06295 1.02880 1.86099 1.23955 1.24997 1.88271 1.19816 0.91969 0.86970 0.99567 1.23552 1.02113 0.86363 0.99154 1.67623 1.12138 1.26563 1.11728 1.23218 0.88555 0.98672 0.95028 1.20679 0.94107 0.94369 1.07874 1.18133 0.87157 0.83568 0.76434 1.90755 1.63938 1.38588 1.50779 1.45823 1.08579 1.08304 1.73392 1.21416 0.78888 0.97945 1.01983 1.21713 0.96121 0.93783 1.04088 1.21446 0.95283 0.95984 1.02429 1.21424 0.93229 0.96849 1.02695 1.21646 0.97621 0.94948 1.01305 1.20888 0.83488 0.96047 0.97452 1.42680 1.02327 1.05826 1.88570 1.19733 0.90599 0.87072 1.40702 0.90598 1.25624 0.96703 1.01065 1.03539 1.69835 1.03582 1.29601 1.59235 0.85032 0.78258 0.79431 0.76795 1.18885 1.21872 1.21868 1.20037 0.91788 0.96062 0.96375 1.20789 0.98983 0.93131 1.03320 0.90991 0.90959 0.86020 0.79218 0.79443 0.74678 0.91987 0.92026 0.89875 0.89806 0.91880 0.91893 0.91239 0.91223 0.92747 0.92764 0.96285 0.96275 0.79593 0.93943 0.90767 0.90703 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.82 113.37 1.11 1.15 16 2 O -0.32 -3.92 9.57 -92.71 -0.89 -4.81 16 3 C 0.06 0.94 6.68 22.56 0.15 1.09 16 4 C 0.05 0.54 10.21 84.83 0.87 1.41 16 5 N -0.47 -6.81 10.34 -194.41 -2.01 -8.82 16 6 C 0.10 1.34 10.69 85.03 0.91 2.25 16 7 C -0.17 -2.73 5.89 -20.00 -0.12 -2.85 16 8 C 0.56 10.58 7.72 86.79 0.67 11.25 16 9 O -0.56 -14.50 13.50 -3.88 -0.05 -14.56 16 10 N -0.71 -9.30 5.51 -465.95 -2.57 -11.87 16 11 C 0.12 1.79 5.67 86.38 0.49 2.28 16 12 C -0.12 -1.45 5.33 30.60 0.16 -1.29 16 13 C -0.11 -1.98 5.21 30.59 0.16 -1.82 16 14 C -0.10 -2.27 5.21 30.60 0.16 -2.11 16 15 C -0.12 -3.69 5.33 30.59 0.16 -3.53 16 16 C 0.15 6.00 6.26 86.38 0.54 6.54 16 17 N -0.75 -39.86 5.60 -343.46 -1.92 -41.78 16 18 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 21 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 22 Si 0.98 46.75 29.55 68.60 2.03 48.77 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 C -0.03 -0.60 5.97 -19.30 -0.12 -0.72 16 27 C -0.11 -1.96 8.70 71.24 0.62 -1.34 16 28 H 0.07 0.05 7.67 -2.39 -0.02 0.04 16 29 H 0.07 0.05 7.67 -2.39 -0.02 0.03 16 30 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.19 1.01 6.30 -2.91 -0.02 0.99 16 32 H 0.19 1.12 6.46 -2.91 -0.02 1.10 16 33 H 0.42 2.81 6.57 -92.71 -0.61 2.20 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.37 20.95 7.67 -92.71 -0.71 20.23 16 47 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 48 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.21 7.45 -2.39 -0.02 1.20 16 50 H 0.08 1.78 5.95 -2.39 -0.01 1.77 16 Total: -1.00 -76.68 408.53 1.58 -75.11 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.37 Total: 23.83 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 7.08 Total: -5.31 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.22 Total: -123.04 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.94 Total: -19.36 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.68 1.58 -75.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178822792.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.257 kcal (2) G-P(sol) polarization free energy of solvation -76.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds