Wall clock time and date at job start Tue Mar 31 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35680 * 117.00311 * 2 1 4 4 C 1.38894 * 119.62510 * 180.02562 * 3 2 1 5 5 C 1.39566 * 118.94658 * 180.30232 * 4 3 2 6 6 C 1.48168 * 120.89391 * 179.70108 * 5 4 3 7 7 O 1.21510 * 119.99967 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99407 * 359.97438 * 6 5 4 9 9 C 1.46507 * 119.99601 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46822 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46692 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47060 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.46997 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47318 * 180.02562 * 14 13 12 16 16 C 1.36941 * 120.00038 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99756 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00101 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46991 * 90.00376 * 20 18 16 22 22 H 1.48500 * 109.47353 * 209.99961 * 20 18 16 23 23 H 1.48493 * 109.47173 * 330.00479 * 20 18 16 24 24 C 1.39976 * 118.21932 * 359.48163 * 5 4 3 25 25 C 1.37977 * 119.12927 * 0.49230 * 24 5 4 26 26 C 1.50696 * 119.51329 * 179.74442 * 25 24 5 27 27 N 1.31908 * 120.97857 * 359.77402 * 25 24 5 28 28 H 1.08993 * 109.47039 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47068 * 59.99938 * 1 2 3 30 30 H 1.09002 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.52328 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00820 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47004 * 299.99902 * 9 8 6 34 34 H 1.08991 * 109.47277 * 60.00335 * 9 8 6 35 35 H 1.09002 * 109.47022 * 299.99610 * 10 9 8 36 36 H 1.08991 * 109.47151 * 59.99976 * 10 9 8 37 37 H 1.09002 * 109.47176 * 299.99647 * 11 10 9 38 38 H 1.09005 * 109.47471 * 60.00206 * 11 10 9 39 39 H 1.08994 * 109.47313 * 300.00331 * 12 11 10 40 40 H 1.09005 * 109.46485 * 60.00001 * 12 11 10 41 41 H 1.09002 * 109.47176 * 300.00046 * 13 12 11 42 42 H 1.08994 * 109.46914 * 60.00139 * 13 12 11 43 43 H 1.09002 * 109.46873 * 299.99837 * 14 13 12 44 44 H 1.09007 * 109.47341 * 59.99908 * 14 13 12 45 45 H 0.96993 * 119.99894 * 359.97438 * 15 14 13 46 46 H 0.97009 * 120.00036 * 179.97438 * 19 18 16 47 47 H 1.07991 * 120.43857 * 180.24961 * 24 5 4 48 48 H 1.08996 * 109.47521 * 270.03259 * 26 25 24 49 49 H 1.09007 * 109.46807 * 30.02428 * 26 25 24 50 50 H 1.08997 * 109.47672 * 150.02285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0005 5 6 4.0515 2.5233 0.0059 6 6 5.5284 2.6413 0.0122 7 8 6.0502 3.7387 0.0183 8 7 6.2930 1.5315 0.0123 9 6 7.7534 1.6481 0.0192 10 6 8.3766 0.2507 0.0172 11 6 9.9017 0.3726 0.0236 12 6 10.5250 -1.0248 0.0223 13 6 12.0501 -0.9030 0.0294 14 6 12.6733 -2.3002 0.0274 15 7 14.1336 -2.1836 0.0348 16 6 14.9105 -3.3113 0.0350 17 1 14.4467 -4.2866 0.0293 18 6 16.2942 -3.2009 0.0415 19 7 16.8595 -2.0122 0.0480 20 14 17.3540 -4.7391 0.0426 21 1 17.6412 -5.1432 -1.3572 22 1 18.6302 -4.4606 0.7490 23 1 16.6332 -5.8363 0.7365 24 6 3.2395 3.6635 0.0015 25 6 1.8682 3.5115 0.0014 26 6 0.9858 4.7332 0.0025 27 7 1.3179 2.3127 0.0009 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0231 0.3681 -0.0014 32 1 5.8765 0.6555 0.0079 33 1 8.0786 2.1919 -0.8678 34 1 8.0707 2.1865 0.9121 35 1 8.0514 -0.2934 0.9039 36 1 8.0592 -0.2873 -0.8760 37 1 10.2265 0.9165 -0.8633 38 1 10.2195 0.9108 0.9167 39 1 10.2001 -1.5684 0.9093 40 1 10.2072 -1.5634 -0.8706 41 1 12.3753 -0.3592 -0.8576 42 1 12.3673 -0.3645 0.9224 43 1 12.3481 -2.8443 0.9141 44 1 12.3559 -2.8384 -0.8659 45 1 14.5502 -1.3077 0.0396 46 1 17.8264 -1.9350 0.0530 47 1 3.6806 4.6493 0.0022 48 1 0.7736 5.0272 1.0304 49 1 1.4945 5.5492 -0.5110 50 1 0.0514 4.5071 -0.5111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179393062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:26 Heat of formation + Delta-G solvation = -52.433710 kcal Electronic energy + Delta-G solvation = -26597.392649 eV Core-core repulsion = 22624.498313 eV Total energy + Delta-G solvation = -3972.894336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.44966 -39.96326 -38.42082 -36.88124 -35.50314 -34.24720 -33.56944 -32.32849 -31.83520 -29.99997 -28.90259 -27.42121 -26.90782 -24.94715 -23.64289 -23.27829 -22.25442 -21.37292 -20.66365 -20.55213 -18.95073 -17.64400 -17.21082 -16.96361 -16.64211 -16.30036 -16.21629 -15.99671 -15.39712 -14.84022 -14.67973 -14.65834 -14.56556 -14.25948 -13.77443 -13.49346 -13.38706 -13.10040 -12.95418 -12.90672 -12.78610 -12.65326 -12.37506 -12.24281 -11.77684 -11.57011 -11.38860 -11.21191 -10.92683 -10.79380 -10.73872 -10.68065 -10.43966 -10.40846 -10.25879 -10.18596 -9.95294 -9.63232 -9.52157 -9.02257 -8.83468 -6.87782 -5.73126 -3.01526 0.12430 0.55888 2.38346 2.41304 2.64545 3.23633 3.45636 3.50318 3.52424 3.53864 4.04392 4.29629 4.40735 4.49643 4.52293 4.63770 4.71483 4.75291 4.80650 4.84204 4.90119 4.95118 5.04282 5.12056 5.20690 5.29059 5.34554 5.36983 5.40183 5.49751 5.55028 5.62775 5.67138 5.69599 5.77049 5.91085 5.94683 6.00026 6.12780 6.33786 6.34555 6.42298 6.49293 6.62784 6.92694 6.96328 6.96733 7.23267 7.66217 7.72830 8.46275 9.56912 10.16623 10.51124 11.50009 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.001269 C = 0.001212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.852174 B =22059.663150 C =23102.248381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.325 3.675 4 C -0.168 4.168 5 C -0.048 4.048 6 C 0.558 3.442 7 O -0.524 6.524 8 N -0.720 5.720 9 C 0.116 3.884 10 C -0.132 4.132 11 C -0.116 4.116 12 C -0.113 4.113 13 C -0.127 4.127 14 C 0.152 3.848 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.155 4.155 25 C 0.167 3.833 26 C -0.106 4.106 27 N -0.527 5.527 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.146 0.854 32 H 0.402 0.598 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.152 0.848 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.535 11.417 -0.090 40.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.146 3.854 4 C -0.189 4.189 5 C -0.058 4.058 6 C 0.344 3.656 7 O -0.400 6.400 8 N -0.372 5.372 9 C -0.007 4.007 10 C -0.170 4.170 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.165 4.165 14 C 0.024 3.976 15 N -0.379 5.379 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.175 4.175 25 C 0.031 3.969 26 C -0.163 4.163 27 N -0.252 5.252 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.164 0.836 32 H 0.238 0.762 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.169 0.831 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -38.862 11.671 -0.077 40.576 hybrid contribution 1.235 -0.972 -0.003 1.571 sum -37.627 10.699 -0.079 39.118 Atomic orbital electron populations 1.22903 0.76764 1.03270 1.02577 1.86263 1.23277 1.24002 1.87659 1.19600 0.88934 0.84779 0.92111 1.21159 0.92499 0.98393 1.06859 1.20152 0.93797 0.93216 0.98658 1.18055 0.85843 0.84658 0.77057 1.90809 1.74127 1.26247 1.48826 1.45973 1.07796 1.08771 1.74644 1.21550 0.77657 0.98438 1.03013 1.21847 0.96882 0.95330 1.02927 1.21518 0.92777 0.98411 1.02706 1.21501 0.95820 0.95899 1.01931 1.21728 0.93833 0.98890 1.02008 1.20658 0.85656 0.93723 0.97528 1.42395 0.99506 1.06561 1.89462 1.19263 0.88370 0.86984 1.42445 0.91223 1.24747 0.96602 0.96632 1.03154 1.69668 1.09544 1.21172 1.57965 0.86179 0.80105 0.82359 0.77505 1.21733 1.21751 1.20778 1.21951 0.93262 0.99903 1.02428 1.20937 0.91655 0.91914 0.92412 1.20790 0.99156 0.92689 1.03681 1.67014 1.41231 0.98499 1.18489 0.92143 0.92151 0.88332 0.83615 0.76226 0.90905 0.90900 0.91137 0.91140 0.91554 0.91560 0.92075 0.92074 0.92083 0.92075 0.96593 0.96594 0.78337 0.93551 0.83069 0.89784 0.89935 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.38 101.05 1.05 1.25 16 2 O -0.31 -2.37 10.47 -18.74 -0.20 -2.56 16 3 C 0.32 2.72 7.49 -17.16 -0.13 2.59 16 4 C -0.17 -1.24 9.55 -38.84 -0.37 -1.61 16 5 C -0.05 -0.40 5.91 -104.67 -0.62 -1.02 16 6 C 0.56 5.48 7.80 -12.18 -0.10 5.39 16 7 O -0.52 -6.93 16.44 5.36 0.09 -6.84 16 8 N -0.72 -5.48 5.51 -61.14 -0.34 -5.81 16 9 C 0.12 0.96 5.67 -4.03 -0.02 0.93 16 10 C -0.13 -0.99 5.33 -26.73 -0.14 -1.13 16 11 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 12 C -0.11 -1.36 5.21 -26.73 -0.14 -1.50 16 13 C -0.13 -2.05 5.33 -26.73 -0.14 -2.19 16 14 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 15 N -0.74 -19.41 5.60 -59.91 -0.34 -19.75 16 16 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.90 13.06 55.49 0.72 -28.18 16 20 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.15 -1.22 9.30 -39.03 -0.36 -1.58 16 25 C 0.17 1.21 6.77 -82.66 -0.56 0.65 16 26 C -0.11 -0.44 10.16 36.00 0.37 -0.07 16 27 N -0.53 -4.40 9.09 -9.60 -0.09 -4.49 16 28 H 0.06 0.30 8.10 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.15 0.73 6.53 -52.49 -0.34 0.39 16 32 H 0.40 2.06 6.61 -40.82 -0.27 1.79 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 45 H 0.38 10.57 7.67 -40.82 -0.31 10.25 16 46 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 47 H 0.15 1.10 7.74 -52.49 -0.41 0.69 16 48 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 50 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 418.02 15.07 6.30 6.30 Total: -1.00 -35.24 418.02 -8.93 -44.17 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.48 Total: 3.48 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.58 Total: -4.07 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.04 Total: -58.22 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -0.11 Total: -9.40 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.24 -8.93 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179393062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.266 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds