Wall clock time and date at job start Tue Mar 31 2020 18:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35680 * 117.00311 * 2 1 4 4 C 1.38894 * 119.62510 * 180.02562 * 3 2 1 5 5 C 1.39566 * 118.94658 * 180.30232 * 4 3 2 6 6 C 1.48168 * 120.89391 * 179.70108 * 5 4 3 7 7 O 1.21510 * 119.99967 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99407 * 359.97438 * 6 5 4 9 9 C 1.46507 * 119.99601 * 180.02562 * 8 6 5 10 10 C 1.53007 * 109.46822 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.46692 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47060 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52995 * 109.46997 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47318 * 180.02562 * 14 13 12 16 16 C 1.36941 * 120.00038 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.38810 * 120.00009 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99756 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00101 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46991 * 90.00376 * 20 18 16 22 22 H 1.48500 * 109.47353 * 209.99961 * 20 18 16 23 23 H 1.48493 * 109.47173 * 330.00479 * 20 18 16 24 24 C 1.39976 * 118.21932 * 359.48163 * 5 4 3 25 25 C 1.37977 * 119.12927 * 0.49230 * 24 5 4 26 26 C 1.50696 * 119.51329 * 179.74442 * 25 24 5 27 27 N 1.31908 * 120.97857 * 359.77402 * 25 24 5 28 28 H 1.08993 * 109.47039 * 299.99883 * 1 2 3 29 29 H 1.08999 * 109.47068 * 59.99938 * 1 2 3 30 30 H 1.09002 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.52328 * 0.02562 * 4 3 2 32 32 H 0.96998 * 120.00820 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47004 * 299.99902 * 9 8 6 34 34 H 1.08991 * 109.47277 * 60.00335 * 9 8 6 35 35 H 1.09002 * 109.47022 * 299.99610 * 10 9 8 36 36 H 1.08991 * 109.47151 * 59.99976 * 10 9 8 37 37 H 1.09002 * 109.47176 * 299.99647 * 11 10 9 38 38 H 1.09005 * 109.47471 * 60.00206 * 11 10 9 39 39 H 1.08994 * 109.47313 * 300.00331 * 12 11 10 40 40 H 1.09005 * 109.46485 * 60.00001 * 12 11 10 41 41 H 1.09002 * 109.47176 * 300.00046 * 13 12 11 42 42 H 1.08994 * 109.46914 * 60.00139 * 13 12 11 43 43 H 1.09002 * 109.46873 * 299.99837 * 14 13 12 44 44 H 1.09007 * 109.47341 * 59.99908 * 14 13 12 45 45 H 0.96993 * 119.99894 * 359.97438 * 15 14 13 46 46 H 0.97009 * 120.00036 * 179.97438 * 19 18 16 47 47 H 1.07991 * 120.43857 * 180.24961 * 24 5 4 48 48 H 1.08996 * 109.47521 * 270.03259 * 26 25 24 49 49 H 1.09007 * 109.46807 * 30.02428 * 26 25 24 50 50 H 1.08997 * 109.47672 * 150.02285 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2724 -0.0005 5 6 4.0515 2.5233 0.0059 6 6 5.5284 2.6413 0.0122 7 8 6.0502 3.7387 0.0183 8 7 6.2930 1.5315 0.0123 9 6 7.7534 1.6481 0.0192 10 6 8.3766 0.2507 0.0172 11 6 9.9017 0.3726 0.0236 12 6 10.5250 -1.0248 0.0223 13 6 12.0501 -0.9030 0.0294 14 6 12.6733 -2.3002 0.0274 15 7 14.1336 -2.1836 0.0348 16 6 14.9105 -3.3113 0.0350 17 1 14.4467 -4.2866 0.0293 18 6 16.2942 -3.2009 0.0415 19 7 16.8595 -2.0122 0.0480 20 14 17.3540 -4.7391 0.0426 21 1 17.6412 -5.1432 -1.3572 22 1 18.6302 -4.4606 0.7490 23 1 16.6332 -5.8363 0.7365 24 6 3.2395 3.6635 0.0015 25 6 1.8682 3.5115 0.0014 26 6 0.9858 4.7332 0.0025 27 7 1.3179 2.3127 0.0009 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0231 0.3681 -0.0014 32 1 5.8765 0.6555 0.0079 33 1 8.0786 2.1919 -0.8678 34 1 8.0707 2.1865 0.9121 35 1 8.0514 -0.2934 0.9039 36 1 8.0592 -0.2873 -0.8760 37 1 10.2265 0.9165 -0.8633 38 1 10.2195 0.9108 0.9167 39 1 10.2001 -1.5684 0.9093 40 1 10.2072 -1.5634 -0.8706 41 1 12.3753 -0.3592 -0.8576 42 1 12.3673 -0.3645 0.9224 43 1 12.3481 -2.8443 0.9141 44 1 12.3559 -2.8384 -0.8659 45 1 14.5502 -1.3077 0.0396 46 1 17.8264 -1.9350 0.0530 47 1 3.6806 4.6493 0.0022 48 1 0.7736 5.0272 1.0304 49 1 1.4945 5.5492 -0.5110 50 1 0.0514 4.5071 -0.5111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179393062.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:25 Heat of formation + Delta-G solvation = -77.166530 kcal Electronic energy + Delta-G solvation = -26598.465145 eV Core-core repulsion = 22624.498313 eV Total energy + Delta-G solvation = -3973.966831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.03712 -40.66509 -38.96233 -37.91473 -36.80769 -35.45725 -34.40215 -33.37921 -32.84614 -31.46967 -29.33973 -28.51284 -27.52933 -26.14835 -24.93610 -23.82008 -23.46617 -22.24883 -22.00113 -21.27594 -19.54062 -19.10743 -18.21737 -17.82395 -17.20720 -17.03296 -16.83003 -16.73600 -16.56573 -16.34478 -15.44718 -15.44314 -15.34651 -15.22620 -15.12380 -14.97422 -14.29919 -14.10146 -13.92016 -13.45684 -13.40280 -13.30770 -13.09279 -13.03061 -12.95017 -12.68259 -12.65910 -12.39368 -12.17098 -12.05271 -12.02038 -11.81205 -11.79286 -11.61325 -11.33225 -11.32278 -11.05621 -10.93322 -10.80347 -10.22566 -9.56335 -9.01369 -7.96401 -5.25974 -0.48932 -0.00786 1.46821 1.49278 1.57889 1.68194 1.83154 2.06264 2.55799 2.63784 3.05774 3.37149 3.45335 3.70343 3.76389 3.89494 3.96562 4.01217 4.02442 4.25264 4.29183 4.31782 4.38171 4.42398 4.43203 4.52240 4.60062 4.64430 4.75876 4.76391 4.78331 4.83593 4.84849 4.95448 4.97844 4.98894 5.02791 5.07344 5.15659 5.27398 5.29464 5.33183 5.39207 5.47997 5.54720 5.57740 6.10631 6.26363 6.33350 6.67280 6.98057 7.31783 8.09087 8.31866 9.27438 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025568 B = 0.001269 C = 0.001212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.852174 B =22059.663150 C =23102.248381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.311 3.689 4 C -0.164 4.164 5 C -0.057 4.057 6 C 0.558 3.442 7 O -0.565 6.565 8 N -0.706 5.706 9 C 0.119 3.881 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.104 4.104 13 C -0.117 4.117 14 C 0.147 3.853 15 N -0.751 5.751 16 C -0.251 4.251 17 H 0.076 0.924 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.977 3.023 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.268 1.268 24 C -0.163 4.163 25 C 0.163 3.837 26 C -0.104 4.104 27 N -0.537 5.537 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.168 0.832 32 H 0.416 0.584 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.373 0.627 46 H 0.252 0.748 47 H 0.153 0.847 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.233 10.161 -0.082 41.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.132 3.868 4 C -0.185 4.185 5 C -0.068 4.068 6 C 0.345 3.655 7 O -0.445 6.445 8 N -0.358 5.358 9 C -0.005 4.005 10 C -0.157 4.157 11 C -0.151 4.151 12 C -0.142 4.142 13 C -0.155 4.155 14 C 0.021 3.979 15 N -0.394 5.394 16 C -0.383 4.383 17 H 0.094 0.906 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.805 3.195 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.193 1.193 24 C -0.184 4.184 25 C 0.027 3.973 26 C -0.161 4.161 27 N -0.263 5.263 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.186 0.814 32 H 0.254 0.746 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.204 0.796 46 H 0.061 0.939 47 H 0.171 0.829 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -40.618 10.361 -0.071 41.919 hybrid contribution 1.679 -0.590 -0.006 1.780 sum -38.939 9.771 -0.077 40.146 Atomic orbital electron populations 1.23090 0.75524 1.04811 1.02412 1.86247 1.24572 1.23746 1.87598 1.19841 0.89444 0.85083 0.92429 1.21322 0.92476 0.98735 1.06008 1.20093 0.93003 0.93973 0.99701 1.18272 0.86471 0.84439 0.76362 1.90786 1.74898 1.27770 1.51014 1.45867 1.07526 1.09031 1.73403 1.21472 0.77943 0.98831 1.02217 1.21717 0.94957 0.94876 1.04181 1.21447 0.94279 0.96822 1.02572 1.21422 0.92513 0.97533 1.02743 1.21640 0.96638 0.95820 1.01397 1.20886 0.82916 0.96628 0.97445 1.42669 1.01777 1.05475 1.89471 1.19700 0.89126 0.88010 1.41468 0.90619 1.25631 0.97987 0.99781 1.03518 1.69831 1.09511 1.23397 1.59451 0.85088 0.77944 0.78885 0.77538 1.21226 1.22001 1.19302 1.22096 0.93715 1.00002 1.02608 1.21375 0.91836 0.92529 0.91594 1.20880 0.98854 0.91770 1.04598 1.67072 1.41580 0.98867 1.18750 0.92298 0.92300 0.85985 0.81447 0.74576 0.91798 0.91795 0.89869 0.89872 0.91799 0.91806 0.91251 0.91246 0.92729 0.92718 0.96310 0.96298 0.79582 0.93939 0.82949 0.88710 0.88561 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 113.37 1.18 1.49 16 2 O -0.31 -4.50 10.47 -89.98 -0.94 -5.44 16 3 C 0.31 4.91 7.49 84.80 0.63 5.55 16 4 C -0.16 -2.23 9.55 22.75 0.22 -2.01 16 5 C -0.06 -0.93 5.91 -19.90 -0.12 -1.05 16 6 C 0.56 10.72 7.80 86.88 0.68 11.40 16 7 O -0.57 -15.18 16.44 -3.75 -0.06 -15.24 16 8 N -0.71 -9.75 5.51 -465.65 -2.57 -12.32 16 9 C 0.12 1.80 5.67 86.38 0.49 2.29 16 10 C -0.12 -1.49 5.33 30.60 0.16 -1.33 16 11 C -0.11 -1.99 5.21 30.60 0.16 -1.83 16 12 C -0.10 -2.28 5.21 30.60 0.16 -2.12 16 13 C -0.12 -3.69 5.33 30.59 0.16 -3.53 16 14 C 0.15 6.01 6.26 86.38 0.54 6.55 16 15 N -0.75 -39.88 5.60 -343.45 -1.92 -41.80 16 16 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 19 N -0.97 -60.78 13.06 21.65 0.28 -60.50 16 20 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 C -0.16 -2.54 9.30 22.63 0.21 -2.33 16 25 C 0.16 2.25 6.77 42.48 0.29 2.54 16 26 C -0.10 -0.74 10.16 71.23 0.72 -0.02 16 27 N -0.54 -8.57 9.09 -297.18 -2.70 -11.27 16 28 H 0.06 0.53 8.10 -2.39 -0.02 0.51 16 29 H 0.06 0.53 8.10 -2.39 -0.02 0.51 16 30 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.17 1.33 6.53 -2.91 -0.02 1.31 16 32 H 0.42 3.31 6.61 -92.71 -0.61 2.70 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 44 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 46 H 0.25 15.19 8.31 -92.70 -0.77 14.42 16 47 H 0.15 2.25 7.74 -2.92 -0.02 2.23 16 48 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.10 0.41 8.07 -2.38 -0.02 0.39 16 50 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -75.89 418.02 0.52 -75.37 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.39 Total: 24.58 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: 6.79 Total: -2.12 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.91 Total: -125.89 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.00 Total: -20.68 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -75.89 0.52 -75.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179393062.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.799 kcal (2) G-P(sol) polarization free energy of solvation -75.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds