Wall clock time and date at job start Tue Mar 31 2020 18:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.63702 * 2 1 4 4 O 1.21287 * 120.00377 * 118.94140 * 3 2 1 5 5 N 1.34774 * 120.00190 * 298.94209 * 3 2 1 6 6 C 1.47429 * 125.65411 * 174.52080 * 5 3 2 7 7 C 1.54906 * 104.83090 * 155.90822 * 6 5 3 8 8 C 1.55152 * 101.58192 * 37.01587 * 7 6 5 9 9 H 1.08995 * 110.72347 * 83.03711 * 8 7 6 10 10 N 1.46911 * 110.71680 * 206.13231 * 8 7 6 11 11 C 1.46897 * 110.99609 * 273.54244 * 10 8 7 12 12 C 1.50708 * 109.46660 * 179.97438 * 11 10 8 13 13 O 1.21287 * 120.00099 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99922 * 179.72568 * 12 11 10 15 15 C 1.37093 * 120.00157 * 180.27887 * 14 12 11 16 16 H 1.08001 * 119.99847 * 359.97438 * 15 14 12 17 17 C 1.38945 * 119.99935 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99613 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00322 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46947 * 89.99854 * 19 17 15 21 21 H 1.48498 * 109.47075 * 209.99825 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00394 * 19 17 15 23 23 C 1.47024 * 125.64453 * 354.57074 * 5 3 2 24 24 C 1.53019 * 109.64753 * 239.57839 * 2 1 3 25 25 C 1.50159 * 110.09549 * 289.32246 * 24 2 1 26 26 C 1.29448 * 124.14593 * 343.28054 * 25 24 2 27 27 C 1.50065 * 124.07827 * 0.24198 * 26 25 24 28 28 C 1.53030 * 110.14489 * 342.86610 * 27 26 25 29 29 H 1.08999 * 109.47017 * 68.11165 * 1 2 3 30 30 H 1.09001 * 109.46616 * 188.09744 * 1 2 3 31 31 H 1.08994 * 109.47693 * 308.10595 * 1 2 3 32 32 H 1.09001 * 110.35951 * 37.06744 * 6 5 3 33 33 H 1.08999 * 110.45977 * 274.79710 * 6 5 3 34 34 H 1.09003 * 111.00288 * 278.93522 * 7 6 5 35 35 H 1.09001 * 110.99891 * 155.08716 * 7 6 5 36 36 H 1.00896 * 110.99801 * 37.50170 * 10 8 7 37 37 H 1.09003 * 109.47031 * 60.00902 * 11 10 8 38 38 H 1.09001 * 109.47439 * 300.00120 * 11 10 8 39 39 H 0.97005 * 119.99482 * 0.28134 * 14 12 11 40 40 H 0.97002 * 119.99469 * 179.97438 * 18 17 15 41 41 H 1.08991 * 109.88974 * 61.60283 * 23 5 3 42 42 H 1.08998 * 109.88255 * 300.43518 * 23 5 3 43 43 H 1.09005 * 109.35743 * 49.74757 * 24 2 1 44 44 H 1.09003 * 109.35869 * 169.32960 * 24 2 1 45 45 H 1.07998 * 117.88960 * 163.03281 * 25 24 2 46 46 H 1.07995 * 117.96038 * 180.26612 * 26 25 24 47 47 H 1.08992 * 109.35873 * 222.66589 * 27 26 25 48 48 H 1.09002 * 109.35805 * 103.07267 * 27 26 25 49 49 H 1.08997 * 109.64436 * 289.75230 * 28 27 26 50 50 H 1.09002 * 109.81612 * 169.21988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4194 0.0000 4 8 2.7190 1.8198 0.9192 5 7 1.7309 2.2439 -1.0214 6 6 2.0607 3.6789 -1.0955 7 6 2.0805 4.0035 -2.6100 8 6 0.9169 3.1205 -3.1331 9 1 -0.0407 3.6220 -2.9935 10 7 1.1203 2.7768 -4.5469 11 6 0.5794 3.8223 -5.4257 12 6 0.8065 3.4359 -6.8646 13 8 1.3636 2.3921 -7.1316 14 7 0.3851 4.2473 -7.8549 15 6 0.5866 3.8931 -9.1638 16 1 1.0834 2.9640 -9.4015 17 6 0.1527 4.7299 -10.1846 18 7 0.3463 4.3906 -11.4394 19 14 -0.7059 6.3371 -9.7735 20 1 0.3029 7.4201 -9.6515 21 1 -1.6670 6.6754 -10.8539 22 1 -1.4360 6.1937 -8.4884 23 6 1.0127 1.8614 -2.2459 24 6 2.0445 -0.7297 -1.2427 25 6 1.7785 -2.2027 -1.1231 26 6 1.4899 -2.8011 -0.0122 27 6 1.3753 -2.1054 1.3125 28 6 2.0457 -0.7314 1.2459 29 1 -0.3633 0.3831 -0.9536 30 1 -0.3632 -1.0175 0.1448 31 1 -0.3634 0.6341 0.8086 32 1 3.0397 3.8664 -0.6544 33 1 1.2981 4.2717 -0.5904 34 1 3.0281 3.7083 -3.0605 35 1 1.8785 5.0602 -2.7857 36 1 2.0961 2.6097 -4.7416 37 1 1.0833 4.7667 -5.2197 38 1 -0.4895 3.9333 -5.2433 39 1 -0.0607 5.0819 -7.6413 40 1 0.0430 4.9746 -12.1520 41 1 0.0127 1.5084 -1.9942 42 1 1.5630 1.0799 -2.7697 43 1 1.5401 -0.3383 -2.1262 44 1 3.1177 -0.5658 -1.3395 45 1 1.8275 -2.7995 -2.0219 46 1 1.3214 -3.8675 -0.0403 47 1 1.8614 -2.7076 2.0801 48 1 0.3224 -1.9819 1.5659 49 1 3.1266 -0.8539 1.1777 50 1 1.7977 -0.1556 2.1376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182818808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:29 Heat of formation + Delta-G solvation = -42.378976 kcal Electronic energy + Delta-G solvation = -29374.635593 eV Core-core repulsion = 25402.177263 eV Total energy + Delta-G solvation = -3972.458330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.13307 -39.07714 -38.34724 -37.54298 -34.84792 -33.90402 -32.87593 -31.71657 -31.34126 -30.32284 -29.03550 -27.48848 -26.39836 -24.58242 -23.66875 -23.49063 -21.71557 -21.13591 -19.54148 -19.44180 -18.45623 -17.72101 -17.05994 -16.84836 -16.35710 -15.81869 -15.50308 -15.25200 -14.85699 -14.82287 -14.63134 -14.18525 -14.05130 -13.73878 -13.65861 -13.38358 -13.19630 -13.05826 -12.77547 -12.74128 -12.54137 -12.46989 -12.26625 -12.16005 -12.03638 -11.90811 -11.67876 -11.42662 -11.21380 -11.18154 -11.01005 -10.83393 -10.63697 -10.50704 -10.01812 -9.80424 -9.62017 -9.24809 -8.83211 -8.67767 -8.28166 -8.21545 -6.35169 -3.86921 2.04031 2.42330 2.70527 2.98776 3.02947 3.11936 3.67624 3.81502 4.06128 4.12665 4.24487 4.37575 4.42869 4.51629 4.74476 4.79034 4.83986 4.86434 4.92812 4.98331 5.03416 5.08477 5.17394 5.17633 5.27349 5.32240 5.41777 5.48396 5.49906 5.54070 5.56336 5.60052 5.62079 5.65940 5.74040 5.76800 5.78522 5.87811 5.88180 5.94362 6.00286 6.12305 6.39835 6.68887 6.94105 7.27480 7.41154 7.53314 7.94848 8.09725 8.54711 8.90453 9.37658 9.76958 10.77827 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002228 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.334595 B =12563.641096 C =13441.785504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.072 4.072 3 C 0.542 3.458 4 O -0.543 6.543 5 N -0.616 5.616 6 C 0.108 3.892 7 C -0.169 4.169 8 C 0.078 3.922 9 H 0.096 0.904 10 N -0.657 5.657 11 C 0.049 3.951 12 C 0.448 3.552 13 O -0.565 6.565 14 N -0.589 5.589 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.041 3.959 18 N -0.880 5.880 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.269 1.269 23 C 0.095 3.905 24 C -0.092 4.092 25 C -0.145 4.145 26 C -0.160 4.160 27 C -0.092 4.092 28 C -0.094 4.094 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.355 0.645 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.069 0.931 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -5.328 25.227 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 C 0.330 3.670 4 O -0.420 6.420 5 N -0.350 5.350 6 C -0.015 4.015 7 C -0.209 4.209 8 C -0.033 4.033 9 H 0.114 0.886 10 N -0.289 5.289 11 C -0.084 4.084 12 C 0.234 3.766 13 O -0.447 6.447 14 N -0.229 5.229 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.520 5.520 19 Si 0.707 3.293 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.195 1.195 23 C -0.027 4.027 24 C -0.129 4.129 25 C -0.164 4.164 26 C -0.179 4.179 27 C -0.129 4.129 28 C -0.132 4.132 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.176 0.824 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.088 0.912 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.846 -6.233 25.294 26.064 hybrid contribution -0.094 2.080 0.050 2.083 sum -0.940 -4.152 25.343 25.698 Atomic orbital electron populations 1.22076 0.92335 1.03421 1.02853 1.20773 0.97507 0.91156 0.98114 1.20263 0.79271 0.86855 0.80567 1.90687 1.38387 1.77127 1.35755 1.48442 1.57431 1.10082 1.19075 1.22143 1.01585 0.81328 0.96407 1.23613 1.00411 1.01546 0.95308 1.22637 0.98571 0.93563 0.88561 0.88616 1.59996 1.25029 1.43479 1.00421 1.21724 1.01032 0.92953 0.92661 1.19673 0.84901 0.86134 0.85888 1.90572 1.45695 1.24718 1.83685 1.42204 1.53687 1.20250 1.06727 1.19425 1.36829 1.08214 0.78969 0.86260 1.25051 0.97805 0.98333 0.94999 1.69624 1.46061 1.37733 0.98565 0.86667 0.80134 0.83953 0.78596 1.19658 1.20145 1.19466 1.22475 0.97549 0.98215 0.84505 1.20804 1.01827 0.93091 0.97187 1.22001 1.00505 0.95660 0.98189 1.22036 1.01757 0.99589 0.94469 1.20532 1.01206 0.95446 0.95696 1.21437 1.00573 0.94805 0.96339 0.91190 0.90608 0.92353 0.90399 0.91368 0.90142 0.89636 0.82420 0.93489 0.89293 0.79683 0.91572 0.90114 0.89329 0.88944 0.90489 0.87380 0.87868 0.90875 0.90535 0.91247 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 7.75 37.16 0.29 -0.89 16 2 C -0.07 -0.67 0.49 -155.44 -0.08 -0.75 16 3 C 0.54 6.35 6.55 -10.99 -0.07 6.28 16 4 O -0.54 -8.18 16.12 5.55 0.09 -8.09 16 5 N -0.62 -6.30 3.31 -170.52 -0.57 -6.86 16 6 C 0.11 1.02 6.93 -2.53 -0.02 1.00 16 7 C -0.17 -1.48 6.63 -24.59 -0.16 -1.64 16 8 C 0.08 0.76 3.24 -65.87 -0.21 0.55 16 9 H 0.10 0.84 7.89 -51.93 -0.41 0.43 16 10 N -0.66 -8.71 5.91 -106.05 -0.63 -9.34 16 11 C 0.05 0.72 6.02 -4.97 -0.03 0.69 16 12 C 0.45 9.59 7.82 -10.98 -0.09 9.51 16 13 O -0.56 -14.49 15.78 5.55 0.09 -14.40 16 14 N -0.59 -13.46 5.09 -10.96 -0.06 -13.52 16 15 C -0.31 -8.43 10.16 -14.94 -0.15 -8.58 16 16 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 18 N -0.88 -25.29 13.96 55.50 0.77 -24.51 16 19 Si 0.88 18.84 27.74 -169.99 -4.71 14.13 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.21 6.52 56.52 0.37 -4.84 16 23 C 0.10 0.89 4.98 -3.06 -0.02 0.87 16 24 C -0.09 -0.83 4.32 -28.13 -0.12 -0.95 16 25 C -0.15 -1.21 9.50 -35.86 -0.34 -1.55 16 26 C -0.16 -1.22 9.21 -35.90 -0.33 -1.55 16 27 C -0.09 -0.66 5.48 -28.17 -0.15 -0.81 16 28 C -0.09 -0.85 4.34 -26.51 -0.12 -0.97 16 29 H 0.07 0.53 4.97 -51.93 -0.26 0.27 16 30 H 0.08 0.55 5.46 -51.93 -0.28 0.26 16 31 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.08 0.81 7.99 -51.93 -0.41 0.39 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.76 7.81 -51.93 -0.41 0.36 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.35 5.02 8.00 -39.29 -0.31 4.70 16 37 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.37 7.37 5.76 -40.82 -0.24 7.14 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.08 0.68 5.47 -51.93 -0.28 0.39 16 42 H 0.09 0.88 5.56 -51.93 -0.29 0.59 16 43 H 0.09 0.81 4.78 -51.93 -0.25 0.56 16 44 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 45 H 0.11 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.49 6.75 -51.93 -0.35 0.14 16 49 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 50 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -33.18 382.70 -8.62 -41.80 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.68 Total: 12.81 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.70 Total: 2.21 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.47 Total: -54.23 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.18 Total: -22.49 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.18 -8.62 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182818808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.578 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds