Wall clock time and date at job start Tue Mar 31 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.63702 * 2 1 4 4 O 1.21287 * 120.00377 * 118.94140 * 3 2 1 5 5 N 1.34774 * 120.00190 * 298.94209 * 3 2 1 6 6 C 1.47429 * 125.65411 * 174.52080 * 5 3 2 7 7 C 1.54906 * 104.83090 * 155.90822 * 6 5 3 8 8 C 1.55152 * 101.58192 * 37.01587 * 7 6 5 9 9 H 1.08995 * 110.72347 * 83.03711 * 8 7 6 10 10 N 1.46911 * 110.71680 * 206.13231 * 8 7 6 11 11 C 1.46897 * 110.99609 * 273.54244 * 10 8 7 12 12 C 1.50708 * 109.46660 * 179.97438 * 11 10 8 13 13 O 1.21287 * 120.00099 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99922 * 179.72568 * 12 11 10 15 15 C 1.37093 * 120.00157 * 180.27887 * 14 12 11 16 16 H 1.08001 * 119.99847 * 359.97438 * 15 14 12 17 17 C 1.38945 * 119.99935 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99613 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00322 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46947 * 89.99854 * 19 17 15 21 21 H 1.48498 * 109.47075 * 209.99825 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00394 * 19 17 15 23 23 C 1.47024 * 125.64453 * 354.57074 * 5 3 2 24 24 C 1.53019 * 109.64753 * 239.57839 * 2 1 3 25 25 C 1.50159 * 110.09549 * 289.32246 * 24 2 1 26 26 C 1.29448 * 124.14593 * 343.28054 * 25 24 2 27 27 C 1.50065 * 124.07827 * 0.24198 * 26 25 24 28 28 C 1.53030 * 110.14489 * 342.86610 * 27 26 25 29 29 H 1.08999 * 109.47017 * 68.11165 * 1 2 3 30 30 H 1.09001 * 109.46616 * 188.09744 * 1 2 3 31 31 H 1.08994 * 109.47693 * 308.10595 * 1 2 3 32 32 H 1.09001 * 110.35951 * 37.06744 * 6 5 3 33 33 H 1.08999 * 110.45977 * 274.79710 * 6 5 3 34 34 H 1.09003 * 111.00288 * 278.93522 * 7 6 5 35 35 H 1.09001 * 110.99891 * 155.08716 * 7 6 5 36 36 H 1.00896 * 110.99801 * 37.50170 * 10 8 7 37 37 H 1.09003 * 109.47031 * 60.00902 * 11 10 8 38 38 H 1.09001 * 109.47439 * 300.00120 * 11 10 8 39 39 H 0.97005 * 119.99482 * 0.28134 * 14 12 11 40 40 H 0.97002 * 119.99469 * 179.97438 * 18 17 15 41 41 H 1.08991 * 109.88974 * 61.60283 * 23 5 3 42 42 H 1.08998 * 109.88255 * 300.43518 * 23 5 3 43 43 H 1.09005 * 109.35743 * 49.74757 * 24 2 1 44 44 H 1.09003 * 109.35869 * 169.32960 * 24 2 1 45 45 H 1.07998 * 117.88960 * 163.03281 * 25 24 2 46 46 H 1.07995 * 117.96038 * 180.26612 * 26 25 24 47 47 H 1.08992 * 109.35873 * 222.66589 * 27 26 25 48 48 H 1.09002 * 109.35805 * 103.07267 * 27 26 25 49 49 H 1.08997 * 109.64436 * 289.75230 * 28 27 26 50 50 H 1.09002 * 109.81612 * 169.21988 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0364 1.4194 0.0000 4 8 2.7190 1.8198 0.9192 5 7 1.7309 2.2439 -1.0214 6 6 2.0607 3.6789 -1.0955 7 6 2.0805 4.0035 -2.6100 8 6 0.9169 3.1205 -3.1331 9 1 -0.0407 3.6220 -2.9935 10 7 1.1203 2.7768 -4.5469 11 6 0.5794 3.8223 -5.4257 12 6 0.8065 3.4359 -6.8646 13 8 1.3636 2.3921 -7.1316 14 7 0.3851 4.2473 -7.8549 15 6 0.5866 3.8931 -9.1638 16 1 1.0834 2.9640 -9.4015 17 6 0.1527 4.7299 -10.1846 18 7 0.3463 4.3906 -11.4394 19 14 -0.7059 6.3371 -9.7735 20 1 0.3029 7.4201 -9.6515 21 1 -1.6670 6.6754 -10.8539 22 1 -1.4360 6.1937 -8.4884 23 6 1.0127 1.8614 -2.2459 24 6 2.0445 -0.7297 -1.2427 25 6 1.7785 -2.2027 -1.1231 26 6 1.4899 -2.8011 -0.0122 27 6 1.3753 -2.1054 1.3125 28 6 2.0457 -0.7314 1.2459 29 1 -0.3633 0.3831 -0.9536 30 1 -0.3632 -1.0175 0.1448 31 1 -0.3634 0.6341 0.8086 32 1 3.0397 3.8664 -0.6544 33 1 1.2981 4.2717 -0.5904 34 1 3.0281 3.7083 -3.0605 35 1 1.8785 5.0602 -2.7857 36 1 2.0961 2.6097 -4.7416 37 1 1.0833 4.7667 -5.2197 38 1 -0.4895 3.9333 -5.2433 39 1 -0.0607 5.0819 -7.6413 40 1 0.0430 4.9746 -12.1520 41 1 0.0127 1.5084 -1.9942 42 1 1.5630 1.0799 -2.7697 43 1 1.5401 -0.3383 -2.1262 44 1 3.1177 -0.5658 -1.3395 45 1 1.8275 -2.7995 -2.0219 46 1 1.3214 -3.8675 -0.0403 47 1 1.8614 -2.7076 2.0801 48 1 0.3224 -1.9819 1.5659 49 1 3.1266 -0.8539 1.1777 50 1 1.7977 -0.1556 2.1376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182818808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:27 Heat of formation + Delta-G solvation = -66.711812 kcal Electronic energy + Delta-G solvation = -29375.690744 eV Core-core repulsion = 25402.177263 eV Total energy + Delta-G solvation = -3973.513481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.94095 -40.35558 -39.51363 -38.50492 -36.19507 -35.54934 -33.73162 -33.58251 -32.04214 -31.18517 -29.92447 -28.15691 -27.83973 -25.71909 -24.94820 -24.18201 -22.44730 -21.93253 -21.27039 -20.35281 -20.23334 -18.45363 -17.91002 -17.75661 -17.60829 -16.87934 -16.85532 -16.44027 -16.05587 -15.77477 -15.44264 -15.38159 -14.97937 -14.94092 -14.62129 -14.45133 -14.32522 -14.04455 -13.96905 -13.85815 -13.56681 -13.51960 -13.18072 -13.14905 -12.99165 -12.80444 -12.64635 -12.60759 -12.38783 -12.15049 -11.95949 -11.90692 -11.74550 -11.53204 -11.48453 -11.19864 -10.68313 -10.40767 -10.22420 -9.87831 -9.66673 -9.31080 -8.39011 -5.99871 1.32337 1.37892 1.41424 1.46960 1.53352 1.89226 1.99692 2.25381 2.71333 3.17940 3.21932 3.42520 3.54345 3.67713 3.72580 3.81073 4.04140 4.10003 4.18441 4.19255 4.21796 4.30356 4.35500 4.38839 4.49446 4.52332 4.59193 4.59748 4.66591 4.71675 4.76861 4.87191 4.89520 4.90252 4.98576 5.01277 5.05146 5.09552 5.19681 5.25032 5.29794 5.43149 5.55103 5.78310 5.92610 6.05233 6.06922 6.31778 6.44602 6.62113 6.91166 7.06226 7.43029 8.00031 8.78629 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020700 B = 0.002228 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.334595 B =12563.641096 C =13441.785504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C 0.535 3.465 4 O -0.584 6.584 5 N -0.613 5.613 6 C 0.105 3.895 7 C -0.159 4.159 8 C 0.084 3.916 9 H 0.119 0.881 10 N -0.672 5.672 11 C 0.064 3.936 12 C 0.448 3.552 13 O -0.615 6.615 14 N -0.592 5.592 15 C -0.327 4.327 16 H 0.054 0.946 17 C -0.018 4.018 18 N -0.936 5.936 19 Si 0.965 3.035 20 H -0.258 1.258 21 H -0.278 1.278 22 H -0.227 1.227 23 C 0.096 3.904 24 C -0.088 4.088 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.089 4.089 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.347 0.653 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.390 0.610 40 H 0.278 0.722 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.112 0.888 46 H 0.119 0.881 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.051 0.949 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 -3.466 27.461 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C 0.325 3.675 4 O -0.464 6.464 5 N -0.346 5.346 6 C -0.018 4.018 7 C -0.199 4.199 8 C -0.027 4.027 9 H 0.137 0.863 10 N -0.304 5.304 11 C -0.068 4.068 12 C 0.236 3.764 13 O -0.499 6.499 14 N -0.234 5.234 15 C -0.456 4.456 16 H 0.072 0.928 17 C -0.216 4.216 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.150 1.150 23 C -0.026 4.026 24 C -0.125 4.125 25 C -0.179 4.179 26 C -0.172 4.172 27 C -0.126 4.126 28 C -0.131 4.131 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.100 0.900 38 H 0.138 0.862 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.130 0.870 46 H 0.137 0.863 47 H 0.103 0.897 48 H 0.109 0.891 49 H 0.070 0.930 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.286 -4.367 27.549 28.086 hybrid contribution 0.773 1.362 -0.628 1.688 sum -2.513 -3.005 26.921 27.205 Atomic orbital electron populations 1.22054 0.90844 1.04137 1.03136 1.20783 0.98568 0.89659 0.98235 1.20724 0.78721 0.87796 0.80235 1.90661 1.40318 1.78030 1.37397 1.48496 1.56822 1.10443 1.18873 1.22243 1.01387 0.81032 0.97090 1.23551 0.99539 1.02529 0.94262 1.22683 0.99902 0.93824 0.86264 0.86303 1.59972 1.24563 1.43700 1.02145 1.21660 1.03398 0.94346 0.87423 1.21057 0.82182 0.84706 0.88464 1.90556 1.47250 1.26988 1.85153 1.42034 1.54705 1.21477 1.05137 1.18991 1.37867 1.06769 0.81984 0.92750 1.26146 0.98168 1.03152 0.94162 1.69816 1.47633 1.40003 1.00243 0.85358 0.78907 0.77122 0.80083 1.18266 1.20343 1.15025 1.22515 0.98015 0.98128 0.83977 1.20740 1.00827 0.93869 0.97093 1.22024 1.01814 0.95175 0.98864 1.22223 1.00450 1.00346 0.94187 1.20557 1.01906 0.94189 0.95929 1.21409 0.99732 0.96010 0.95961 0.90671 0.89583 0.92316 0.91842 0.89838 0.91273 0.87541 0.83368 0.90020 0.86202 0.77407 0.91239 0.88597 0.90195 0.88815 0.92106 0.86968 0.86349 0.89703 0.89125 0.93006 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.75 71.98 0.56 -1.46 16 2 C -0.07 -1.25 0.49 -52.79 -0.03 -1.28 16 3 C 0.54 12.47 6.55 87.66 0.57 13.04 16 4 O -0.58 -18.00 16.12 -3.05 -0.05 -18.05 16 5 N -0.61 -11.82 3.31 -811.79 -2.69 -14.51 16 6 C 0.11 1.79 6.93 86.85 0.60 2.39 16 7 C -0.16 -2.33 6.63 31.98 0.21 -2.12 16 8 C 0.08 1.34 3.24 46.10 0.15 1.49 16 9 H 0.12 1.45 7.89 -2.39 -0.02 1.43 16 10 N -0.67 -16.15 5.91 -489.42 -2.89 -19.04 16 11 C 0.06 1.63 6.02 85.56 0.52 2.14 16 12 C 0.45 18.72 7.82 87.66 0.69 19.41 16 13 O -0.62 -32.40 15.78 -3.05 -0.05 -32.45 16 14 N -0.59 -26.39 5.09 -306.99 -1.56 -27.95 16 15 C -0.33 -18.62 10.16 84.04 0.85 -17.77 16 16 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 17 C -0.02 -0.97 5.50 84.92 0.47 -0.51 16 18 N -0.94 -55.73 13.96 21.66 0.30 -55.42 16 19 Si 0.97 37.43 27.74 68.60 1.90 39.33 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 21 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 22 H -0.23 -7.21 6.52 99.48 0.65 -6.56 16 23 C 0.10 1.59 4.98 86.73 0.43 2.02 16 24 C -0.09 -1.57 4.32 29.68 0.13 -1.44 16 25 C -0.16 -2.52 9.50 27.06 0.26 -2.27 16 26 C -0.15 -2.08 9.21 27.03 0.25 -1.83 16 27 C -0.09 -1.13 5.48 29.66 0.16 -0.97 16 28 C -0.09 -1.68 4.34 30.74 0.13 -1.55 16 29 H 0.07 0.96 4.97 -2.39 -0.01 0.95 16 30 H 0.09 1.03 5.46 -2.39 -0.01 1.02 16 31 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 32 H 0.06 1.28 7.99 -2.39 -0.02 1.26 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.20 7.81 -2.39 -0.02 1.18 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.35 9.42 8.00 -89.70 -0.72 8.70 16 37 H 0.08 1.60 8.13 -2.39 -0.02 1.59 16 38 H 0.12 2.43 8.08 -2.39 -0.02 2.41 16 39 H 0.39 14.13 5.76 -92.70 -0.53 13.59 16 40 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.10 1.34 5.47 -2.39 -0.01 1.32 16 42 H 0.08 1.51 5.56 -2.39 -0.01 1.49 16 43 H 0.09 1.60 4.78 -2.38 -0.01 1.59 16 44 H 0.06 1.24 8.10 -2.39 -0.02 1.23 16 45 H 0.11 1.65 8.06 -2.91 -0.02 1.62 16 46 H 0.12 1.27 8.06 -2.91 -0.02 1.24 16 47 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.09 0.94 6.75 -2.39 -0.02 0.92 16 49 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 50 H 0.06 1.28 7.88 -2.39 -0.02 1.26 16 Total: -1.00 -78.87 382.70 0.58 -78.29 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -0.34 Total: 40.49 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.95 Total: 9.32 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -6.84 Total: -116.93 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.10 Total: -50.50 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.90 Total: 39.33 kcal Total: -78.87 0.58 -78.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182818808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.579 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds