Wall clock time and date at job start Tue Mar 31 2020 18:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.64129 * 2 1 4 4 O 1.21275 * 120.00019 * 120.00234 * 3 2 1 5 5 N 1.34782 * 119.99745 * 299.72832 * 3 2 1 6 6 C 1.47018 * 125.65141 * 354.82505 * 5 3 2 7 7 C 1.54316 * 107.27359 * 181.02384 * 6 5 3 8 8 C 1.55162 * 102.94393 * 22.19369 * 7 6 5 9 9 H 1.09000 * 111.00588 * 82.56932 * 8 7 6 10 10 N 1.46901 * 111.00707 * 206.38646 * 8 7 6 11 11 C 1.46891 * 110.99892 * 273.54604 * 10 8 7 12 12 C 1.50703 * 109.47528 * 179.97438 * 11 10 8 13 13 O 1.21299 * 119.99330 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00805 * 179.97438 * 12 11 10 15 15 C 1.37097 * 120.00311 * 180.02562 * 14 12 11 16 16 H 1.07997 * 119.99955 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99948 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99765 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00103 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47002 * 89.99931 * 19 17 15 21 21 H 1.48494 * 109.46826 * 210.00124 * 19 17 15 22 22 H 1.48501 * 109.47020 * 329.99897 * 19 17 15 23 23 C 1.47422 * 125.64610 * 174.51816 * 5 3 2 24 24 C 1.53022 * 109.64062 * 120.42244 * 2 1 3 25 25 C 1.50068 * 110.14865 * 169.33296 * 24 2 1 26 26 C 1.29443 * 124.07105 * 342.86506 * 25 24 2 27 27 C 1.50068 * 124.08048 * 0.49434 * 26 25 24 28 28 C 1.53039 * 110.13608 * 342.82799 * 27 26 25 29 29 H 1.09003 * 109.47024 * 68.32381 * 1 2 3 30 30 H 1.08994 * 109.47028 * 188.32363 * 1 2 3 31 31 H 1.09005 * 109.46958 * 308.32049 * 1 2 3 32 32 H 1.09008 * 109.88128 * 300.44112 * 6 5 3 33 33 H 1.08994 * 109.88346 * 61.60444 * 6 5 3 34 34 H 1.09008 * 110.71909 * 140.55325 * 7 6 5 35 35 H 1.08993 * 110.72268 * 263.65102 * 7 6 5 36 36 H 1.00897 * 110.99790 * 149.58466 * 10 8 7 37 37 H 1.09000 * 109.47313 * 299.99770 * 11 10 8 38 38 H 1.09004 * 109.47807 * 59.99649 * 11 10 8 39 39 H 0.97005 * 119.99291 * 0.02562 * 14 12 11 40 40 H 0.97006 * 120.00117 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.37137 * 274.74565 * 23 5 3 42 42 H 1.09004 * 110.37108 * 37.07001 * 23 5 3 43 43 H 1.09004 * 109.35399 * 289.53403 * 24 2 1 44 44 H 1.08997 * 109.36067 * 49.12054 * 24 2 1 45 45 H 1.07995 * 117.96684 * 162.84183 * 25 24 2 46 46 H 1.08005 * 117.96283 * 180.47124 * 26 25 24 47 47 H 1.08995 * 109.35827 * 103.04839 * 27 26 25 48 48 H 1.09001 * 109.35795 * 222.77686 * 27 26 25 49 49 H 1.08997 * 109.66232 * 289.78154 * 28 27 26 50 50 H 1.09006 * 109.63872 * 169.13913 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0366 1.4193 0.0000 4 8 2.7350 1.8138 0.9095 5 7 1.7179 2.2485 -1.0136 6 6 0.9793 1.8729 -2.2281 7 6 0.8740 3.1354 -3.1092 8 6 2.0488 4.0126 -2.6013 9 1 2.9882 3.7157 -3.0677 10 7 1.7785 5.4384 -2.8297 11 6 2.2014 5.8453 -4.1762 12 6 1.9084 7.3103 -4.3736 13 8 1.3970 7.9521 -3.4804 14 7 2.2144 7.9074 -5.5425 15 6 1.9483 9.2403 -5.7218 16 1 1.4930 9.8117 -4.9265 17 6 2.2634 9.8556 -6.9271 18 7 2.0088 11.1333 -7.0987 19 14 3.0490 8.8666 -8.3034 20 1 1.9872 8.2849 -9.1633 21 1 3.9152 9.7551 -9.1191 22 1 3.8691 7.7737 -7.7218 23 6 2.0468 3.6838 -1.0853 24 6 2.0444 -0.7298 1.2428 25 6 3.5221 -0.9655 1.1292 26 6 4.1844 -0.8957 0.0193 27 6 3.5691 -0.5587 -1.3073 28 6 2.0500 -0.7332 -1.2430 29 1 -0.3633 0.3796 -0.9550 30 1 -0.3633 -1.0168 0.1488 31 1 -0.3633 0.6372 0.8063 32 1 1.5187 1.0913 -2.7632 33 1 -0.0179 1.5224 -1.9620 34 1 1.0076 2.8836 -4.1614 35 1 -0.0810 3.6367 -2.9523 36 1 2.2210 6.0078 -2.1240 37 1 3.2712 5.6699 -4.2896 38 1 1.6571 5.2629 -4.9197 39 1 2.6231 7.3939 -6.2569 40 1 2.2284 11.5629 -7.9403 41 1 1.2895 4.2728 -0.5680 42 1 3.0314 3.8693 -0.6561 43 1 1.8419 -0.1248 2.1266 44 1 1.5320 -1.6871 1.3376 45 1 4.0668 -1.2082 2.0296 46 1 5.2461 -1.0917 0.0499 47 1 3.8039 0.4746 -1.5625 48 1 3.9746 -1.2210 -2.0723 49 1 1.8052 -1.7929 -1.1725 50 1 1.5942 -0.3073 -2.1370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182818809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:33 Heat of formation + Delta-G solvation = -40.607418 kcal Electronic energy + Delta-G solvation = -29430.530223 eV Core-core repulsion = 25458.148714 eV Total energy + Delta-G solvation = -3972.381509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.26615 -38.94026 -38.20154 -37.14423 -34.96726 -33.92041 -33.27816 -31.69756 -31.28324 -30.61232 -29.07540 -27.04464 -26.36722 -24.54554 -23.74819 -23.43388 -21.95887 -20.72690 -19.89161 -19.39685 -18.36820 -18.06185 -16.84373 -16.61835 -16.42727 -15.94108 -15.43518 -15.28433 -15.02670 -14.78656 -14.55206 -14.18874 -13.91220 -13.78638 -13.56083 -13.27233 -13.15135 -13.13560 -12.91435 -12.76080 -12.56400 -12.49563 -12.37490 -12.23540 -12.04485 -11.96034 -11.71732 -11.55272 -11.23011 -11.16882 -10.86918 -10.77695 -10.61913 -10.41999 -9.99820 -9.83104 -9.59842 -9.21001 -8.79861 -8.64198 -8.28615 -8.19985 -6.33115 -3.84757 2.11164 2.46914 2.69294 3.00135 3.04651 3.13168 3.70597 4.00155 4.00739 4.08307 4.12892 4.30535 4.38537 4.46025 4.63212 4.76655 4.77953 4.86144 4.93901 4.96919 5.01121 5.09236 5.12448 5.18485 5.25290 5.30168 5.37111 5.38593 5.44605 5.51456 5.52610 5.59939 5.69880 5.71608 5.72933 5.74702 5.78841 5.80224 5.85933 5.87772 6.00762 6.09231 6.39649 6.73278 7.00146 7.31049 7.45416 7.55623 7.99459 8.12100 8.57108 8.92694 9.39903 9.79634 10.79932 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025850 B = 0.002082 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.916117 B =13447.792055 C =13712.795670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.076 4.076 3 C 0.544 3.456 4 O -0.533 6.533 5 N -0.615 5.615 6 C 0.089 3.911 7 C -0.125 4.125 8 C 0.073 3.927 9 H 0.058 0.942 10 N -0.656 5.656 11 C 0.049 3.951 12 C 0.449 3.551 13 O -0.564 6.564 14 N -0.590 5.590 15 C -0.305 4.305 16 H 0.120 0.880 17 C 0.041 3.959 18 N -0.880 5.880 19 Si 0.880 3.120 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.270 1.270 23 C 0.107 3.893 24 C -0.068 4.068 25 C -0.137 4.137 26 C -0.163 4.163 27 C -0.094 4.094 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.355 0.645 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.370 0.630 40 H 0.274 0.726 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.195 -29.735 9.138 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C 0.332 3.668 4 O -0.408 6.408 5 N -0.350 5.350 6 C -0.034 4.034 7 C -0.163 4.163 8 C -0.038 4.038 9 H 0.076 0.924 10 N -0.289 5.289 11 C -0.084 4.084 12 C 0.235 3.765 13 O -0.446 6.446 14 N -0.229 5.229 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.162 4.162 18 N -0.520 5.520 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.016 4.016 24 C -0.105 4.105 25 C -0.155 4.155 26 C -0.182 4.182 27 C -0.131 4.131 28 C -0.155 4.155 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.175 0.825 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.391 -29.023 9.996 30.699 hybrid contribution 1.725 -0.529 -1.220 2.178 sum 1.334 -29.552 8.776 30.856 Atomic orbital electron populations 1.22016 0.92330 1.03033 1.03233 1.20847 0.96951 0.92043 0.98090 1.20078 0.79578 0.86547 0.80597 1.90703 1.37180 1.77040 1.35916 1.48299 1.56854 1.09914 1.19905 1.22546 0.96805 0.98337 0.85667 1.22748 1.00508 0.94061 0.99005 1.22703 0.97025 0.89677 0.94409 0.92394 1.60058 1.63720 1.01334 1.03803 1.21741 0.98555 0.96117 0.91944 1.19671 0.84815 0.88147 0.83887 1.90578 1.46436 1.65454 1.42101 1.42201 1.56369 1.10792 1.13574 1.19430 1.38699 0.83220 1.02047 0.86259 1.25049 0.97803 0.95747 0.97604 1.69621 1.46941 1.09511 1.25963 0.86664 0.79862 0.80086 0.82713 1.19582 1.20184 1.19548 1.22324 1.02035 0.81221 0.96024 1.20352 0.93610 0.99689 0.96845 1.21874 0.95852 1.00067 0.97681 1.21898 0.99504 1.02238 0.94512 1.20473 0.94749 1.01837 0.96067 1.21931 0.95846 1.00953 0.96762 0.91066 0.91234 0.91944 0.90727 0.90539 0.90192 0.89027 0.82460 0.93610 0.89372 0.79696 0.91589 0.90109 0.90454 0.90091 0.90185 0.87938 0.88147 0.91090 0.90743 0.90467 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.26 37.16 0.31 -0.62 16 2 C -0.08 -0.61 0.50 -155.44 -0.08 -0.69 16 3 C 0.54 6.18 4.83 -10.99 -0.05 6.12 16 4 O -0.53 -8.11 15.42 5.56 0.09 -8.03 16 5 N -0.61 -6.25 3.31 -170.39 -0.56 -6.82 16 6 C 0.09 0.67 5.29 -3.07 -0.02 0.65 16 7 C -0.12 -1.11 6.60 -24.90 -0.16 -1.27 16 8 C 0.07 0.79 3.33 -65.44 -0.22 0.58 16 9 H 0.06 0.61 7.92 -51.93 -0.41 0.20 16 10 N -0.66 -9.44 6.00 -105.60 -0.63 -10.07 16 11 C 0.05 0.77 6.04 -4.98 -0.03 0.74 16 12 C 0.45 9.92 7.82 -10.99 -0.09 9.83 16 13 O -0.56 -14.89 15.78 5.54 0.09 -14.80 16 14 N -0.59 -13.78 5.09 -10.96 -0.06 -13.83 16 15 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 16 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 18 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 19 Si 0.88 19.09 27.74 -169.99 -4.72 14.37 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 23 C 0.11 1.21 6.41 -2.41 -0.02 1.20 16 24 C -0.07 -0.56 4.54 -28.18 -0.13 -0.69 16 25 C -0.14 -1.25 8.93 -35.90 -0.32 -1.57 16 26 C -0.16 -1.48 9.60 -35.90 -0.34 -1.82 16 27 C -0.09 -0.75 5.59 -28.17 -0.16 -0.91 16 28 C -0.12 -0.77 4.55 -26.51 -0.12 -0.89 16 29 H 0.07 0.39 4.96 -51.93 -0.26 0.13 16 30 H 0.07 0.32 8.04 -51.93 -0.42 -0.10 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 32 H 0.07 0.46 5.61 -51.92 -0.29 0.16 16 33 H 0.08 0.48 5.45 -51.93 -0.28 0.20 16 34 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.35 5.42 8.23 -39.29 -0.32 5.10 16 37 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.37 7.54 5.76 -40.82 -0.24 7.31 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.08 0.95 7.99 -51.93 -0.41 0.54 16 43 H 0.08 0.77 7.76 -51.93 -0.40 0.37 16 44 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 45 H 0.10 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.10 0.84 8.06 -52.48 -0.42 0.42 16 47 H 0.07 0.68 7.41 -51.93 -0.38 0.29 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.43 8.12 -51.93 -0.42 0.00 16 50 H 0.08 0.44 4.72 -51.93 -0.24 0.19 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.26 384.71 -8.76 -43.02 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.86 Total: 12.18 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -1.67 Total: 2.96 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.48 Total: -55.51 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.83 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.72 Total: 14.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.26 -8.76 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182818809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.416 kcal (2) G-P(sol) polarization free energy of solvation -34.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds