Wall clock time and date at job start Tue Mar 31 2020 19:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50696 * 110.67363 * 2 1 4 4 O 1.21281 * 120.00177 * 115.12484 * 3 2 1 5 5 N 1.34773 * 120.00444 * 295.12476 * 3 2 1 6 6 C 1.47033 * 125.64557 * 354.74784 * 5 3 2 7 7 C 1.54319 * 107.27090 * 181.07930 * 6 5 3 8 8 C 1.55451 * 102.97204 * 22.19530 * 7 6 5 9 9 H 1.08999 * 111.01545 * 82.51837 * 8 7 6 10 10 N 1.46905 * 111.11603 * 206.46783 * 8 7 6 11 11 C 1.46901 * 110.99314 * 267.09631 * 10 8 7 12 12 C 1.50701 * 109.46752 * 180.02562 * 11 10 8 13 13 O 1.21300 * 120.00169 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00256 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00030 * 180.02562 * 14 12 11 16 16 H 1.07992 * 120.00449 * 359.97438 * 15 14 12 17 17 C 1.38954 * 119.99473 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00212 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99471 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47067 * 90.00310 * 19 17 15 21 21 H 1.48506 * 109.47086 * 209.99888 * 19 17 15 22 22 H 1.48501 * 109.47317 * 330.00127 * 19 17 15 23 23 C 1.47426 * 125.65270 * 174.77123 * 5 3 2 24 24 C 1.54892 * 110.91426 * 236.65912 * 2 1 3 25 25 C 1.54271 * 104.19181 * 279.55534 * 24 2 1 26 26 H 1.09000 * 117.76031 * 116.75291 * 25 24 2 27 27 C 1.55473 * 118.30096 * 272.79976 * 25 24 2 28 28 C 1.53005 * 59.83805 * 93.29588 * 27 25 24 29 29 H 1.08996 * 119.29616 * 111.71250 * 28 27 25 30 30 C 1.54268 * 118.19493 * 265.85313 * 28 27 25 31 31 H 1.09004 * 109.47503 * 68.70603 * 1 2 3 32 32 H 1.08997 * 109.47346 * 188.71206 * 1 2 3 33 33 H 1.09007 * 109.46766 * 308.70919 * 1 2 3 34 34 H 1.08994 * 109.87747 * 300.49828 * 6 5 3 35 35 H 1.08996 * 109.88009 * 61.50510 * 6 5 3 36 36 H 1.09003 * 110.71818 * 140.55694 * 7 6 5 37 37 H 1.09001 * 110.72018 * 263.65078 * 7 6 5 38 38 H 1.00895 * 110.99860 * 31.05236 * 10 8 7 39 39 H 1.08994 * 109.47436 * 300.00160 * 11 10 8 40 40 H 1.08994 * 109.47308 * 60.00428 * 11 10 8 41 41 H 0.97003 * 119.99581 * 359.97438 * 14 12 11 42 42 H 0.97000 * 119.99529 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36630 * 274.69076 * 23 5 3 44 44 H 1.08999 * 110.36827 * 36.90678 * 23 5 3 45 45 H 1.08998 * 110.48541 * 38.22538 * 24 2 1 46 46 H 1.08996 * 110.49015 * 160.87869 * 24 2 1 47 47 H 1.09001 * 118.06096 * 346.16172 * 27 25 24 48 48 H 1.08999 * 117.18644 * 200.82127 * 27 25 24 49 49 H 1.08995 * 110.48803 * 330.31836 * 30 28 27 50 50 H 1.09007 * 110.48176 * 207.67466 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0620 1.4099 0.0000 4 8 2.6933 1.8199 0.9509 5 7 1.8363 2.2154 -1.0567 6 6 1.1853 1.8178 -2.3137 7 6 1.1713 3.0563 -3.2342 8 6 2.3223 3.9299 -2.6612 9 1 3.2889 3.6039 -3.0452 10 7 2.0980 5.3536 -2.9455 11 6 2.7612 5.7517 -4.1944 12 6 2.5099 7.2151 -4.4522 13 8 1.8443 7.8628 -3.6719 14 7 3.0247 7.8043 -5.5496 15 6 2.7966 9.1357 -5.7837 16 1 2.2040 9.7124 -5.0891 17 6 3.3270 9.7428 -6.9155 18 7 4.0476 9.0410 -7.7610 19 14 3.0155 11.5568 -7.2349 20 1 4.0908 12.3625 -6.6026 21 1 3.0052 11.8071 -8.6987 22 1 1.7030 11.9429 -6.6574 23 6 2.2016 3.6410 -1.1440 24 6 2.0829 -0.7952 -1.2087 25 6 1.9859 -2.2703 -0.7673 26 1 1.3274 -2.9278 -1.3348 27 6 3.1734 -2.8809 0.0291 28 6 1.9835 -2.2694 0.7715 29 1 1.3166 -2.9197 1.3375 30 6 2.0790 -0.7938 1.2114 31 1 -0.3634 0.3732 -0.9575 32 1 -0.3634 -1.0158 0.1557 33 1 -0.3633 0.6427 0.8020 34 1 1.7490 1.0124 -2.7843 35 1 0.1652 1.4891 -2.1150 36 1 1.3798 2.7724 -4.2657 37 1 0.2167 3.5777 -3.1646 38 1 1.1120 5.5652 -2.9762 39 1 3.8336 5.5773 -4.1080 40 1 2.3628 5.1633 -5.0209 41 1 3.5573 7.2863 -6.1733 42 1 4.4175 9.4649 -8.5512 43 1 1.4217 4.2603 -0.7007 44 1 3.1551 3.8195 -0.6469 45 1 1.4697 -0.6206 -2.0929 46 1 3.1202 -0.5224 -1.4026 47 1 4.1144 -2.3310 0.0486 48 1 3.2641 -3.9671 0.0332 49 1 3.1156 -0.5208 1.4084 50 1 1.4629 -0.6181 2.0933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184507552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:11 Heat of formation + Delta-G solvation = -38.890038 kcal Electronic energy + Delta-G solvation = -28905.036035 eV Core-core repulsion = 24932.728996 eV Total energy + Delta-G solvation = -3972.307038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16722 -39.31669 -38.32781 -37.55156 -34.88223 -33.90368 -33.48019 -31.27340 -30.60730 -29.24909 -28.45920 -27.40155 -26.28344 -24.59226 -23.66659 -22.68679 -21.08645 -20.64467 -20.16316 -19.30830 -19.04402 -17.93643 -16.93499 -16.61243 -16.47275 -16.00605 -15.58640 -15.29986 -14.82979 -14.55175 -14.43954 -14.01782 -13.98220 -13.74301 -13.63592 -13.32551 -13.02199 -12.98904 -12.77311 -12.53534 -12.43826 -12.31043 -12.06096 -11.92341 -11.72975 -11.61165 -11.50526 -11.37911 -11.34504 -11.13283 -11.05464 -10.89620 -10.40829 -10.37107 -10.23848 -10.14456 -9.77121 -9.53142 -8.81636 -8.50159 -8.12490 -7.98557 -6.43938 -3.84767 2.42666 2.70693 3.16770 3.16953 3.25641 3.31341 3.87200 3.91590 4.00289 4.13399 4.20527 4.35248 4.40827 4.45453 4.57262 4.63066 4.70784 4.76901 4.90900 4.95984 5.04263 5.05633 5.09580 5.17470 5.24056 5.24724 5.31733 5.36659 5.39802 5.45435 5.54623 5.56712 5.65203 5.71409 5.73531 5.77822 5.79247 5.83733 5.88210 5.88850 5.93978 5.95656 6.11141 6.24295 7.10892 7.33090 7.53382 7.55202 7.98020 8.03834 8.58507 9.15628 9.51495 10.02691 10.73705 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033576 B = 0.001812 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.731458 B =15447.718992 C =15705.509931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C 0.541 3.459 4 O -0.537 6.537 5 N -0.616 5.616 6 C 0.097 3.903 7 C -0.167 4.167 8 C 0.079 3.921 9 H 0.093 0.907 10 N -0.656 5.656 11 C 0.052 3.948 12 C 0.439 3.561 13 O -0.583 6.583 14 N -0.563 5.563 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.115 3.885 24 C -0.086 4.086 25 C -0.166 4.166 26 H 0.113 0.887 27 C -0.155 4.155 28 C -0.162 4.162 29 H 0.110 0.890 30 C -0.072 4.072 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.354 0.646 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.470 -26.111 9.862 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.083 4.083 3 C 0.330 3.670 4 O -0.414 6.414 5 N -0.350 5.350 6 C -0.026 4.026 7 C -0.207 4.207 8 C -0.033 4.033 9 H 0.111 0.889 10 N -0.288 5.288 11 C -0.080 4.080 12 C 0.225 3.775 13 O -0.467 6.467 14 N -0.199 5.199 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.008 4.008 24 C -0.123 4.123 25 C -0.184 4.184 26 H 0.131 0.869 27 C -0.191 4.191 28 C -0.180 4.180 29 H 0.128 0.872 30 C -0.110 4.110 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.117 0.883 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.970 -25.176 11.181 27.992 hybrid contribution -0.407 0.106 -1.432 1.492 sum -5.377 -25.070 9.749 27.430 Atomic orbital electron populations 1.21806 0.91856 1.02985 1.02678 1.21879 0.97379 0.91457 0.97546 1.20079 0.79289 0.86510 0.81149 1.90714 1.40220 1.75970 1.34458 1.48410 1.59609 1.11457 1.15539 1.22277 0.97934 0.97926 0.84504 1.23505 1.00788 0.96760 0.99629 1.22784 0.98222 0.87887 0.94392 0.88911 1.59895 1.19256 1.14148 1.35451 1.21702 1.00154 0.95736 0.90440 1.19784 0.85483 0.88420 0.83833 1.90535 1.43425 1.65238 1.47520 1.41859 1.46562 1.10586 1.20924 1.19707 1.30930 0.85102 1.07179 0.87889 1.25270 0.96516 1.00445 0.95719 1.69611 1.34596 1.37011 1.13057 0.85850 0.79037 0.82040 0.77314 1.20365 1.20938 1.19420 1.22175 1.02052 0.80122 0.96459 1.22115 1.01540 0.92100 0.96568 1.23569 1.03127 0.97073 0.94671 0.86872 1.23465 0.93088 1.00118 1.02467 1.23252 1.02502 0.97517 0.94699 0.87211 1.21828 1.02373 0.90707 0.96057 0.91605 0.91085 0.92054 0.90871 0.90972 0.89785 0.90030 0.82552 0.89462 0.93637 0.77453 0.91856 0.90675 0.89857 0.90040 0.90913 0.88815 0.88340 0.90199 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.30 37.15 0.31 -0.63 16 2 C -0.08 -0.67 0.54 -153.67 -0.08 -0.76 16 3 C 0.54 6.45 6.60 -10.99 -0.07 6.38 16 4 O -0.54 -8.55 16.07 5.56 0.09 -8.46 16 5 N -0.62 -6.57 3.33 -170.52 -0.57 -7.14 16 6 C 0.10 0.75 5.36 -3.06 -0.02 0.73 16 7 C -0.17 -1.44 6.56 -24.74 -0.16 -1.61 16 8 C 0.08 0.90 3.39 -65.40 -0.22 0.68 16 9 H 0.09 1.04 7.83 -51.93 -0.41 0.63 16 10 N -0.66 -9.92 6.04 -105.55 -0.64 -10.55 16 11 C 0.05 0.87 6.03 -4.97 -0.03 0.84 16 12 C 0.44 10.13 7.82 -10.98 -0.09 10.04 16 13 O -0.58 -15.60 15.78 5.54 0.09 -15.52 16 14 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 19 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 C 0.11 1.41 6.62 -2.52 -0.02 1.39 16 24 C -0.09 -0.60 4.28 -25.07 -0.11 -0.71 16 25 C -0.17 -1.04 6.76 -88.18 -0.60 -1.64 16 26 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 27 C -0.15 -0.98 10.21 -25.41 -0.26 -1.24 16 28 C -0.16 -1.09 6.38 -89.50 -0.57 -1.66 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 C -0.07 -0.62 5.11 -25.07 -0.13 -0.75 16 31 H 0.07 0.39 5.46 -51.93 -0.28 0.11 16 32 H 0.07 0.41 7.54 -51.93 -0.39 0.02 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.48 5.96 -51.93 -0.31 0.17 16 35 H 0.07 0.47 5.74 -51.93 -0.30 0.17 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.71 7.77 -51.93 -0.40 0.31 16 38 H 0.35 5.46 7.91 -39.29 -0.31 5.15 16 39 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 45 H 0.08 0.46 6.07 -51.93 -0.32 0.14 16 46 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.84 7.58 -51.93 -0.39 0.44 16 50 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 LS Contribution 392.09 15.07 5.91 5.91 Total: -1.00 -32.73 392.09 -9.76 -42.49 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -8.00 Total: 11.86 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.28 Total: 3.15 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.54 Total: -55.32 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.18 Total: -23.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.73 -9.76 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184507552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.596 kcal (2) G-P(sol) polarization free energy of solvation -32.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds