Wall clock time and date at job start Tue Mar 31 2020 18:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51263 * 120.85439 * 2 1 4 4 C 1.53226 * 108.54218 * 231.36658 * 3 2 1 5 5 C 1.52957 * 109.40608 * 305.37772 * 4 3 2 6 6 C 1.50703 * 109.41324 * 183.70096 * 5 4 3 7 7 O 1.21277 * 119.99674 * 325.03184 * 6 5 4 8 8 N 1.34772 * 119.99912 * 145.30970 * 6 5 4 9 9 C 1.47422 * 125.65079 * 4.45933 * 8 6 5 10 10 C 1.55124 * 104.72703 * 155.81974 * 9 8 6 11 11 C 1.55162 * 101.48470 * 37.29298 * 10 9 8 12 12 H 1.08997 * 110.86956 * 82.77051 * 11 10 9 13 13 N 1.46901 * 110.72037 * 205.97109 * 11 10 9 14 14 C 1.46900 * 111.00096 * 268.52178 * 13 11 10 15 15 C 1.50698 * 109.47067 * 179.97438 * 14 13 11 16 16 O 1.21289 * 120.00019 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99924 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00200 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99431 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00448 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99624 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00364 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47430 * 59.99832 * 22 20 18 24 24 H 1.48499 * 109.47265 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46932 * 299.99793 * 22 20 18 26 26 C 1.47021 * 125.64698 * 184.77014 * 8 6 5 27 27 C 1.52960 * 109.81904 * 63.59339 * 5 4 3 28 28 C 1.51277 * 120.84920 * 180.02562 * 2 1 3 29 29 H 1.07994 * 119.99616 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00202 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.62648 * 111.65636 * 3 2 1 32 32 H 1.09002 * 109.62580 * 351.09181 * 3 2 1 33 33 H 1.08999 * 109.48807 * 185.38879 * 4 3 2 34 34 H 1.09003 * 109.48815 * 65.35906 * 4 3 2 35 35 H 1.09004 * 109.41005 * 303.56001 * 5 4 3 36 36 H 1.09007 * 110.36938 * 274.75147 * 9 8 6 37 37 H 1.09004 * 110.36777 * 37.06884 * 9 8 6 38 38 H 1.09000 * 111.19226 * 279.19553 * 10 9 8 39 39 H 1.08994 * 110.94286 * 155.28838 * 10 9 8 40 40 H 1.00904 * 110.99629 * 32.47806 * 13 11 10 41 41 H 1.08993 * 109.47048 * 300.00564 * 14 13 11 42 42 H 1.09003 * 109.46651 * 60.00425 * 14 13 11 43 43 H 0.96998 * 120.00017 * 359.97438 * 17 15 14 44 44 H 0.97004 * 119.99738 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.88093 * 300.43619 * 26 8 6 46 46 H 1.08995 * 109.88461 * 61.60244 * 26 8 6 47 47 H 1.08997 * 109.48177 * 56.37926 * 27 5 4 48 48 H 1.09003 * 109.47723 * 176.42821 * 27 5 4 49 49 H 1.08995 * 109.62834 * 248.34569 * 28 2 1 50 50 H 1.08999 * 109.62321 * 8.91811 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1143 1.2517 -1.1348 5 6 3.9805 0.0000 -0.9843 6 6 5.0498 0.0003 -2.0462 7 8 4.8105 0.4479 -3.1476 8 7 6.2703 -0.5021 -1.7735 9 6 6.6661 -1.1637 -0.5169 10 6 7.8621 -2.0707 -0.9084 11 6 8.5923 -1.1853 -1.9527 12 1 9.2406 -0.4599 -1.4612 13 7 9.3606 -2.0146 -2.8908 14 6 10.7377 -2.2072 -2.4170 15 6 11.4931 -3.0612 -3.4025 16 8 10.9389 -3.4689 -4.4014 17 7 12.7844 -3.3720 -3.1738 18 6 13.4718 -4.1485 -4.0705 19 1 12.9783 -4.5115 -4.9601 20 6 14.8032 -4.4685 -3.8351 21 7 15.4038 -4.0264 -2.7530 22 14 15.7400 -5.5258 -5.0573 23 1 15.7616 -4.8520 -6.3803 24 1 17.1319 -5.7213 -4.5780 25 1 15.0711 -6.8455 -5.1848 26 6 7.4294 -0.4754 -2.6775 27 6 3.1141 -1.2514 -1.1355 28 6 2.0857 -1.2987 -0.0006 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.5988 1.4185 0.9542 32 1 1.4027 2.1331 -0.1590 33 1 3.7461 2.1387 -1.0897 34 1 2.5967 1.2224 -2.0937 35 1 4.4477 -0.0008 0.0005 36 1 6.9743 -0.4231 0.2211 37 1 5.8441 -1.7664 -0.1302 38 1 7.5193 -3.0027 -1.3579 39 1 8.5008 -2.2665 -0.0472 40 1 8.9045 -2.9010 -3.0469 41 1 11.2287 -1.2386 -2.3238 42 1 10.7219 -2.7016 -1.4457 43 1 13.2277 -3.0457 -2.3751 44 1 16.3332 -4.2501 -2.5884 45 1 7.1913 -1.0028 -3.6012 46 1 7.7043 0.5561 -2.8974 47 1 2.5964 -1.2215 -2.0942 48 1 3.7460 -2.1385 -1.0906 49 1 2.5987 -1.4192 0.9535 50 1 1.4026 -2.1330 -0.1601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185423992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:37 Heat of formation + Delta-G solvation = -65.222723 kcal Electronic energy + Delta-G solvation = -28382.490109 eV Core-core repulsion = 24409.041200 eV Total energy + Delta-G solvation = -3973.448909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.66230 -38.93797 -38.17897 -37.43162 -34.78146 -33.82857 -33.20274 -31.53195 -31.27210 -30.60449 -29.13433 -27.22557 -25.96873 -24.08791 -23.42845 -23.34995 -21.96165 -20.81765 -19.43748 -19.30265 -18.70304 -17.94619 -17.44447 -16.58988 -16.03715 -15.79774 -15.30446 -15.26599 -14.90713 -14.76074 -14.53759 -14.10920 -14.03145 -13.83052 -13.66599 -13.65825 -13.18293 -13.06202 -12.81895 -12.73144 -12.53660 -12.40005 -12.13643 -11.92721 -11.75845 -11.66430 -11.49662 -11.46750 -11.41519 -11.04806 -11.01791 -10.96132 -10.60350 -10.45373 -10.23114 -9.89103 -9.52055 -9.40052 -8.81686 -8.51351 -8.12169 -7.98319 -6.43674 -3.84604 1.85778 2.44501 2.73682 3.19192 3.25058 3.29599 3.87613 4.00360 4.10773 4.18712 4.21580 4.28116 4.38803 4.56795 4.62253 4.73094 4.81681 4.85323 4.90578 4.99143 5.05612 5.10290 5.13188 5.18289 5.21981 5.25931 5.29929 5.33372 5.47439 5.50053 5.55604 5.64361 5.69582 5.71411 5.72163 5.74917 5.83649 5.91118 5.91725 5.95408 6.11860 6.24018 6.25268 6.47659 7.12661 7.32621 7.53340 7.54924 8.00416 8.03860 8.58801 9.15794 9.51630 10.03028 10.73863 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.001673 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.275300 B =16735.417277 C =16805.126392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.099 4.099 5 C -0.100 4.100 6 C 0.532 3.468 7 O -0.537 6.537 8 N -0.619 5.619 9 C 0.102 3.898 10 C -0.167 4.167 11 C 0.080 3.920 12 H 0.094 0.906 13 N -0.658 5.658 14 C 0.052 3.948 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.114 3.886 27 C -0.104 4.104 28 C -0.083 4.083 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.354 0.646 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.094 8.692 13.608 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.137 4.137 5 C -0.121 4.121 6 C 0.320 3.680 7 O -0.413 6.413 8 N -0.354 5.354 9 C -0.021 4.021 10 C -0.207 4.207 11 C -0.032 4.032 12 H 0.112 0.888 13 N -0.290 5.290 14 C -0.080 4.080 15 C 0.224 3.776 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.009 4.009 27 C -0.142 4.142 28 C -0.121 4.121 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.175 0.825 41 H 0.105 0.895 42 H 0.063 0.937 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.271 9.176 11.939 28.563 hybrid contribution 0.816 -0.973 0.798 1.500 sum -23.456 8.203 12.737 27.923 Atomic orbital electron populations 1.23641 0.94987 1.01889 1.02853 1.21966 0.95106 0.95785 0.99218 1.20826 0.97529 0.94950 0.98904 1.21407 0.96725 0.95988 0.99580 1.21279 0.94804 0.97881 0.98173 1.20333 0.81514 0.77127 0.89028 1.90715 1.79961 1.46699 1.23940 1.48556 1.10701 1.58595 1.17567 1.22332 0.97612 0.95408 0.86789 1.23629 0.97088 0.98956 1.00999 1.22613 0.93937 0.95708 0.90931 0.88799 1.59949 1.01720 1.22323 1.45003 1.21699 0.89582 1.00483 0.96266 1.19785 0.83347 0.85817 0.88604 1.90535 1.68579 1.57648 1.29936 1.41847 1.09133 1.45923 1.23004 1.19664 0.93314 1.26335 1.03718 0.87953 1.25258 0.96871 0.98318 0.97416 1.69607 1.13004 1.45708 1.25981 0.85910 0.78062 0.80050 0.80154 1.19859 1.20971 1.19925 1.21926 0.84056 1.01139 0.93735 1.21477 0.96893 0.96036 0.99831 1.20806 0.97445 0.95059 0.98745 0.88452 0.88459 0.90806 0.90877 0.91343 0.90458 0.89274 0.91076 0.90557 0.90054 0.89553 0.82543 0.89452 0.93664 0.77458 0.91814 0.90156 0.91085 0.90795 0.91206 0.90666 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 13.99 29.02 0.41 -0.82 16 2 C -0.12 -0.80 5.35 -100.51 -0.54 -1.33 16 3 C -0.08 -0.53 6.03 -27.49 -0.17 -0.70 16 4 C -0.10 -0.80 4.81 -26.64 -0.13 -0.93 16 5 C -0.10 -0.82 1.84 -91.81 -0.17 -0.99 16 6 C 0.53 6.29 6.84 -10.99 -0.08 6.21 16 7 O -0.54 -8.60 16.68 5.56 0.09 -8.51 16 8 N -0.62 -6.62 3.32 -170.39 -0.57 -7.19 16 9 C 0.10 0.76 6.19 -2.41 -0.01 0.75 16 10 C -0.17 -1.44 6.68 -24.46 -0.16 -1.60 16 11 C 0.08 0.90 3.28 -65.87 -0.22 0.68 16 12 H 0.09 0.97 7.82 -51.93 -0.41 0.56 16 13 N -0.66 -10.02 5.93 -106.05 -0.63 -10.65 16 14 C 0.05 0.86 6.03 -4.98 -0.03 0.83 16 15 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 16 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 17 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 18 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 19 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 22 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 C 0.11 1.41 6.63 -3.06 -0.02 1.39 16 27 C -0.10 -0.78 5.20 -26.64 -0.14 -0.92 16 28 C -0.08 -0.50 6.03 -27.48 -0.17 -0.67 16 29 H 0.10 0.54 7.92 -52.49 -0.42 0.12 16 30 H 0.10 0.54 7.92 -52.49 -0.42 0.12 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.76 7.97 -51.93 -0.41 0.34 16 35 H 0.09 0.57 7.13 -51.93 -0.37 0.20 16 36 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.08 0.45 7.42 -51.93 -0.39 0.07 16 38 H 0.08 0.76 7.77 -51.93 -0.40 0.35 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.35 5.62 7.91 -39.29 -0.31 5.31 16 41 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.39 9.27 7.90 -40.82 -0.32 8.95 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.07 0.49 7.91 -51.93 -0.41 0.08 16 49 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.40 7.89 -51.93 -0.41 -0.01 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -33.12 402.96 -9.45 -42.57 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -8.40 Total: 10.96 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.75 Total: 4.00 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.53 Total: -55.39 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.18 Total: -24.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.12 -9.45 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185423992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.655 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds