Wall clock time and date at job start Tue Mar 31 2020 18:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51263 * 120.85439 * 2 1 4 4 C 1.53226 * 108.54218 * 231.36658 * 3 2 1 5 5 C 1.52957 * 109.40608 * 305.37772 * 4 3 2 6 6 C 1.50703 * 109.41324 * 183.70096 * 5 4 3 7 7 O 1.21277 * 119.99674 * 325.03184 * 6 5 4 8 8 N 1.34772 * 119.99912 * 145.30970 * 6 5 4 9 9 C 1.47422 * 125.65079 * 4.45933 * 8 6 5 10 10 C 1.55124 * 104.72703 * 155.81974 * 9 8 6 11 11 C 1.55162 * 101.48470 * 37.29298 * 10 9 8 12 12 H 1.08997 * 110.86956 * 82.77051 * 11 10 9 13 13 N 1.46901 * 110.72037 * 205.97109 * 11 10 9 14 14 C 1.46900 * 111.00096 * 268.52178 * 13 11 10 15 15 C 1.50698 * 109.47067 * 179.97438 * 14 13 11 16 16 O 1.21289 * 120.00019 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99924 * 180.02562 * 15 14 13 18 18 C 1.37100 * 120.00200 * 180.02562 * 17 15 14 19 19 H 1.08007 * 119.99431 * 359.97438 * 18 17 15 20 20 C 1.38942 * 120.00448 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99624 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00364 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47430 * 59.99832 * 22 20 18 24 24 H 1.48499 * 109.47265 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46932 * 299.99793 * 22 20 18 26 26 C 1.47021 * 125.64698 * 184.77014 * 8 6 5 27 27 C 1.52960 * 109.81904 * 63.59339 * 5 4 3 28 28 C 1.51277 * 120.84920 * 180.02562 * 2 1 3 29 29 H 1.07994 * 119.99616 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.00202 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.62648 * 111.65636 * 3 2 1 32 32 H 1.09002 * 109.62580 * 351.09181 * 3 2 1 33 33 H 1.08999 * 109.48807 * 185.38879 * 4 3 2 34 34 H 1.09003 * 109.48815 * 65.35906 * 4 3 2 35 35 H 1.09004 * 109.41005 * 303.56001 * 5 4 3 36 36 H 1.09007 * 110.36938 * 274.75147 * 9 8 6 37 37 H 1.09004 * 110.36777 * 37.06884 * 9 8 6 38 38 H 1.09000 * 111.19226 * 279.19553 * 10 9 8 39 39 H 1.08994 * 110.94286 * 155.28838 * 10 9 8 40 40 H 1.00904 * 110.99629 * 32.47806 * 13 11 10 41 41 H 1.08993 * 109.47048 * 300.00564 * 14 13 11 42 42 H 1.09003 * 109.46651 * 60.00425 * 14 13 11 43 43 H 0.96998 * 120.00017 * 359.97438 * 17 15 14 44 44 H 0.97004 * 119.99738 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.88093 * 300.43619 * 26 8 6 46 46 H 1.08995 * 109.88461 * 61.60244 * 26 8 6 47 47 H 1.08997 * 109.48177 * 56.37926 * 27 5 4 48 48 H 1.09003 * 109.47723 * 176.42821 * 27 5 4 49 49 H 1.08995 * 109.62834 * 248.34569 * 28 2 1 50 50 H 1.08999 * 109.62321 * 8.91811 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1143 1.2517 -1.1348 5 6 3.9805 0.0000 -0.9843 6 6 5.0498 0.0003 -2.0462 7 8 4.8105 0.4479 -3.1476 8 7 6.2703 -0.5021 -1.7735 9 6 6.6661 -1.1637 -0.5169 10 6 7.8621 -2.0707 -0.9084 11 6 8.5923 -1.1853 -1.9527 12 1 9.2406 -0.4599 -1.4612 13 7 9.3606 -2.0146 -2.8908 14 6 10.7377 -2.2072 -2.4170 15 6 11.4931 -3.0612 -3.4025 16 8 10.9389 -3.4689 -4.4014 17 7 12.7844 -3.3720 -3.1738 18 6 13.4718 -4.1485 -4.0705 19 1 12.9783 -4.5115 -4.9601 20 6 14.8032 -4.4685 -3.8351 21 7 15.4038 -4.0264 -2.7530 22 14 15.7400 -5.5258 -5.0573 23 1 15.7616 -4.8520 -6.3803 24 1 17.1319 -5.7213 -4.5780 25 1 15.0711 -6.8455 -5.1848 26 6 7.4294 -0.4754 -2.6775 27 6 3.1141 -1.2514 -1.1355 28 6 2.0857 -1.2987 -0.0006 29 1 -0.5399 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.5988 1.4185 0.9542 32 1 1.4027 2.1331 -0.1590 33 1 3.7461 2.1387 -1.0897 34 1 2.5967 1.2224 -2.0937 35 1 4.4477 -0.0008 0.0005 36 1 6.9743 -0.4231 0.2211 37 1 5.8441 -1.7664 -0.1302 38 1 7.5193 -3.0027 -1.3579 39 1 8.5008 -2.2665 -0.0472 40 1 8.9045 -2.9010 -3.0469 41 1 11.2287 -1.2386 -2.3238 42 1 10.7219 -2.7016 -1.4457 43 1 13.2277 -3.0457 -2.3751 44 1 16.3332 -4.2501 -2.5884 45 1 7.1913 -1.0028 -3.6012 46 1 7.7043 0.5561 -2.8974 47 1 2.5964 -1.2215 -2.0942 48 1 3.7460 -2.1385 -1.0906 49 1 2.5987 -1.4192 0.9535 50 1 1.4026 -2.1330 -0.1601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185423992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:36 Heat of formation + Delta-G solvation = -88.157349 kcal Electronic energy + Delta-G solvation = -28383.484629 eV Core-core repulsion = 24409.041200 eV Total energy + Delta-G solvation = -3974.443429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.50277 -40.22890 -39.38471 -38.36737 -36.19755 -35.55910 -33.83960 -33.26025 -32.07681 -31.55993 -30.04348 -28.21997 -27.23804 -25.63517 -24.22266 -23.96573 -22.63223 -21.72136 -21.08828 -20.18663 -19.91988 -19.25209 -18.33757 -17.67726 -17.46552 -16.77457 -16.62960 -16.33018 -15.93209 -15.74860 -15.58729 -15.48423 -15.21826 -14.79969 -14.54389 -14.42185 -14.14020 -14.01398 -13.87684 -13.64857 -13.49416 -13.41270 -13.29461 -13.10635 -12.97042 -12.69951 -12.52428 -12.44169 -12.39513 -12.35955 -12.11949 -11.99321 -11.78280 -11.60112 -11.50123 -11.13809 -10.79034 -10.35420 -10.00938 -9.88437 -9.71416 -9.30987 -8.46287 -5.94842 1.38653 1.40003 1.42330 1.52749 1.54542 1.88936 2.06368 2.29986 2.91710 3.21176 3.35802 3.45719 3.61885 3.65206 3.72116 3.87724 4.06387 4.07308 4.17536 4.22656 4.30219 4.33022 4.36768 4.37562 4.46289 4.51574 4.57807 4.60925 4.65706 4.75593 4.79883 4.81470 4.86135 5.00613 5.01934 5.03332 5.08838 5.11947 5.16004 5.19044 5.23815 5.35943 5.41334 5.79264 5.89756 6.01046 6.10731 6.34075 6.48765 6.61050 7.10519 7.13397 7.57187 8.13090 8.70596 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.037211 B = 0.001673 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.275300 B =16735.417277 C =16805.126392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.079 4.079 4 C -0.098 4.098 5 C -0.090 4.090 6 C 0.524 3.476 7 O -0.591 6.591 8 N -0.618 5.618 9 C 0.101 3.899 10 C -0.159 4.159 11 C 0.085 3.915 12 H 0.112 0.888 13 N -0.679 5.679 14 C 0.070 3.930 15 C 0.435 3.565 16 O -0.627 6.627 17 N -0.571 5.571 18 C -0.337 4.337 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.115 3.885 27 C -0.101 4.101 28 C -0.078 4.078 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.347 0.653 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.048 0.952 48 H 0.077 0.923 49 H 0.094 0.906 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.189 8.593 16.756 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.133 4.133 3 C -0.116 4.116 4 C -0.136 4.136 5 C -0.111 4.111 6 C 0.314 3.686 7 O -0.472 6.472 8 N -0.351 5.351 9 C -0.021 4.021 10 C -0.198 4.198 11 C -0.026 4.026 12 H 0.130 0.870 13 N -0.311 5.311 14 C -0.062 4.062 15 C 0.222 3.778 16 O -0.514 6.514 17 N -0.209 5.209 18 C -0.466 4.466 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.558 5.558 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.009 4.009 27 C -0.139 4.139 28 C -0.115 4.115 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.113 0.887 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.359 9.083 15.153 30.091 hybrid contribution 0.792 -0.908 -0.228 1.226 sum -23.567 8.175 14.925 29.069 Atomic orbital electron populations 1.23794 0.95119 1.02452 1.02415 1.22115 0.95398 0.96190 0.99621 1.20804 0.97053 0.95078 0.98676 1.21367 0.97028 0.95974 0.99201 1.21308 0.93699 0.98143 0.97970 1.21108 0.82262 0.76105 0.89113 1.90687 1.80959 1.49163 1.26368 1.48660 1.09876 1.58118 1.18452 1.22619 0.97990 0.95935 0.85540 1.23583 0.97460 0.98128 1.00639 1.22615 0.93386 0.95853 0.90732 0.86968 1.59869 1.01568 1.22412 1.47239 1.21545 0.89413 1.00085 0.95181 1.20971 0.82816 0.85045 0.88921 1.90505 1.69401 1.59242 1.32246 1.41903 1.09902 1.46152 1.22904 1.19619 0.94422 1.28409 1.04174 0.90527 1.25989 0.97031 0.98982 0.99022 1.69659 1.13448 1.45971 1.26769 0.85018 0.77285 0.78306 0.77903 1.19988 1.19374 1.19731 1.21775 0.85478 1.00285 0.93375 1.21449 0.97148 0.95893 0.99446 1.20805 0.97048 0.94910 0.98754 0.88057 0.87902 0.89062 0.90551 0.91671 0.93144 0.86257 0.88383 0.88166 0.90944 0.87160 0.83335 0.87525 0.90444 0.76818 0.91274 0.93451 0.92040 0.93275 0.90466 0.88720 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 13.99 67.78 0.95 -1.25 16 2 C -0.13 -1.51 5.35 -16.12 -0.09 -1.60 16 3 C -0.08 -0.84 6.03 30.10 0.18 -0.66 16 4 C -0.10 -1.53 4.81 30.66 0.15 -1.38 16 5 C -0.09 -1.33 1.84 -11.57 -0.02 -1.36 16 6 C 0.52 12.34 6.84 87.66 0.60 12.94 16 7 O -0.59 -20.05 16.68 -3.02 -0.05 -20.10 16 8 N -0.62 -12.49 3.32 -811.37 -2.70 -15.19 16 9 C 0.10 1.13 6.19 86.93 0.54 1.67 16 10 C -0.16 -2.22 6.68 32.06 0.21 -2.01 16 11 C 0.08 1.74 3.28 46.11 0.15 1.90 16 12 H 0.11 1.95 7.82 -2.39 -0.02 1.93 16 13 N -0.68 -20.20 5.93 -489.44 -2.90 -23.10 16 14 C 0.07 2.19 6.03 85.56 0.52 2.70 16 15 C 0.43 20.19 7.82 87.66 0.69 20.88 16 16 O -0.63 -34.76 15.78 -3.06 -0.05 -34.81 16 17 N -0.57 -28.69 5.29 -306.99 -1.62 -30.31 16 18 C -0.34 -19.01 9.68 84.04 0.81 -18.19 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.54 5.50 84.92 0.47 -0.07 16 21 N -0.92 -48.67 13.05 21.66 0.28 -48.38 16 22 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.11 2.84 6.63 86.73 0.57 3.42 16 27 C -0.10 -1.38 5.20 30.66 0.16 -1.22 16 28 C -0.08 -0.74 6.03 30.11 0.18 -0.56 16 29 H 0.10 0.99 7.92 -2.91 -0.02 0.97 16 30 H 0.10 0.98 7.92 -2.91 -0.02 0.95 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.77 7.89 -2.39 -0.02 0.75 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 35 H 0.12 1.06 7.13 -2.39 -0.02 1.04 16 36 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.10 0.72 7.42 -2.38 -0.02 0.70 16 38 H 0.07 1.18 7.77 -2.39 -0.02 1.17 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.35 11.06 7.91 -89.69 -0.71 10.35 16 41 H 0.11 2.98 8.08 -2.39 -0.02 2.96 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 44 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 45 H 0.05 1.48 8.03 -2.39 -0.02 1.46 16 46 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.08 0.93 7.91 -2.39 -0.02 0.91 16 49 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 50 H 0.08 0.69 7.89 -2.39 -0.02 0.67 16 Total: -1.00 -75.74 402.96 0.56 -75.18 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.50 Total: 36.79 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.07 Total: 15.21 kcal Atomic # 7 Polarization: -110.04 SS G_CDS: -6.94 Total: -116.98 kcal Atomic # 8 Polarization: -54.81 SS G_CDS: -0.10 Total: -54.91 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -75.74 0.56 -75.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185423992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.975 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds