Wall clock time and date at job start Tue Mar 31 2020 20:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30448 * 125.99061 * 2 1 4 4 N 1.39927 * 108.89861 * 179.97438 * 3 2 1 5 5 C 1.46499 * 125.75401 * 180.02562 * 4 3 2 6 6 C 1.53175 * 109.54281 * 59.53395 * 5 4 3 7 7 C 1.53094 * 109.16268 * 183.15385 * 6 5 4 8 8 O 1.42903 * 109.41803 * 57.60535 * 7 6 5 9 9 C 1.42901 * 114.09595 * 298.84476 * 8 7 6 10 10 C 1.53094 * 109.41800 * 61.15546 * 9 8 7 11 11 C 1.34260 * 108.49370 * 359.75351 * 4 3 2 12 12 C 1.50701 * 126.29420 * 180.24534 * 11 4 3 13 13 C 1.38051 * 107.41681 * 0.39256 * 11 4 3 14 14 C 1.47425 * 126.41667 * 179.87271 * 13 11 4 15 15 O 1.21603 * 120.00000 * 269.71345 * 14 13 11 16 16 N 1.34777 * 119.99743 * 89.71035 * 14 13 11 17 17 C 1.46499 * 119.99665 * 179.72398 * 16 14 13 18 18 C 1.53004 * 109.47198 * 180.27868 * 17 16 14 19 19 C 1.52997 * 109.47000 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.46940 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00043 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00213 * 180.02562 * 20 19 18 23 23 N 1.31512 * 120.00116 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00201 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47135 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47080 * 119.99899 * 24 22 20 27 27 H 1.48502 * 109.47342 * 239.99982 * 24 22 20 28 28 H 1.09005 * 109.47389 * 269.99958 * 1 2 3 29 29 H 1.09003 * 109.47070 * 29.99862 * 1 2 3 30 30 H 1.09007 * 109.47291 * 149.99970 * 1 2 3 31 31 H 1.09004 * 109.54226 * 179.79895 * 5 4 3 32 32 H 1.09001 * 109.52208 * 303.05616 * 6 5 4 33 33 H 1.08997 * 109.52294 * 63.24552 * 6 5 4 34 34 H 1.09004 * 109.47792 * 297.62276 * 7 6 5 35 35 H 1.09000 * 109.48070 * 177.58889 * 7 6 5 36 36 H 1.09000 * 109.48214 * 301.16938 * 9 8 7 37 37 H 1.09001 * 109.47999 * 181.13873 * 9 8 7 38 38 H 1.08996 * 109.52494 * 182.48014 * 10 9 8 39 39 H 1.09003 * 109.57170 * 62.32554 * 10 9 8 40 40 H 1.09000 * 109.47194 * 270.19588 * 12 11 4 41 41 H 1.09001 * 109.47095 * 30.20189 * 12 11 4 42 42 H 1.09006 * 109.46994 * 150.19752 * 12 11 4 43 43 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 44 44 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 45 45 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 46 46 H 1.08995 * 109.46638 * 300.00121 * 18 17 16 47 47 H 1.09006 * 109.47139 * 60.00254 * 18 17 16 48 48 H 1.08995 * 109.47672 * 299.99669 * 19 18 17 49 49 H 1.09007 * 109.47288 * 60.00489 * 19 18 17 50 50 H 0.97000 * 120.00572 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 0.0006 5 6 4.7786 1.5290 0.0013 6 6 4.7444 2.4216 1.2456 7 6 5.9244 3.3958 1.1979 8 8 5.8564 4.1659 -0.0039 9 6 5.9318 3.3880 -1.2003 10 6 4.7521 2.4135 -1.2490 11 6 3.6439 -0.6980 0.0064 12 6 4.8800 -1.5600 0.0143 13 6 2.3372 -1.1433 0.0005 14 6 1.8915 -2.5486 0.0012 15 8 1.7081 -3.1288 -1.0517 16 7 1.6873 -3.1902 1.1687 17 6 1.2386 -4.5848 1.1693 18 6 1.0784 -5.0684 2.6120 19 6 0.6091 -6.5246 2.6126 20 6 0.4520 -7.0011 4.0336 21 1 0.6650 -6.3321 4.8543 22 6 0.0362 -8.2912 4.2862 23 7 -0.2228 -9.1061 3.2870 24 14 -0.1593 -8.8817 6.0476 25 1 0.1912 -7.7807 6.9805 26 1 -1.5669 -9.2954 6.2776 27 1 0.7416 -10.0380 6.2850 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 5.6897 0.9305 0.0053 32 1 3.8098 2.9822 1.2661 33 1 4.8187 1.8029 2.1399 34 1 6.8592 2.8356 1.2183 35 1 5.8807 4.0621 2.0595 36 1 6.8668 2.8278 -1.2113 37 1 5.8935 4.0486 -2.0665 38 1 4.8319 1.7890 -2.1388 39 1 3.8172 2.9731 -1.2795 40 1 5.1835 -1.7694 -1.0115 41 1 5.6843 -1.0371 0.5318 42 1 4.6661 -2.4971 0.5284 43 1 1.8332 -2.7273 2.0085 44 1 0.2814 -4.6588 0.6529 45 1 1.9758 -5.2040 0.6583 46 1 2.0354 -4.9944 3.1283 47 1 0.3410 -4.4492 3.1230 48 1 -0.3480 -6.5982 2.0964 49 1 1.3462 -7.1441 2.1015 50 1 -0.5150 -10.0139 3.4646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198446590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:44 Heat of formation + Delta-G solvation = -59.429126 kcal Electronic energy + Delta-G solvation = -28683.678185 eV Core-core repulsion = 24710.480505 eV Total energy + Delta-G solvation = -3973.197680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.67027 -40.52105 -39.97194 -36.92153 -36.04458 -35.15708 -33.89020 -33.09971 -32.21045 -32.09033 -29.51177 -28.81388 -28.00602 -25.74656 -24.87940 -24.66663 -22.87022 -22.28655 -21.95235 -20.63541 -20.13326 -18.62759 -18.39999 -17.55437 -17.15876 -16.96671 -16.78787 -16.52898 -16.47866 -16.23818 -15.80050 -15.34574 -15.06272 -14.88133 -14.74990 -14.45425 -14.26455 -14.23050 -14.09089 -13.74572 -13.54973 -13.49058 -13.41330 -13.26332 -13.10675 -12.76958 -12.54478 -12.52593 -12.40341 -12.34347 -11.99248 -11.92294 -11.66470 -11.58560 -11.40739 -11.22317 -10.93797 -10.70128 -10.54941 -10.18736 -10.10357 -9.59290 -8.18490 -6.29603 0.62265 1.24333 1.36979 1.42145 1.42565 1.53037 1.55558 2.33188 2.44643 2.89245 3.15290 3.20531 3.46198 3.53689 3.64529 3.84134 3.85377 3.89892 4.03225 4.19314 4.22235 4.23252 4.30019 4.30569 4.43886 4.51695 4.53876 4.57439 4.64355 4.67121 4.71012 4.75566 4.84815 4.91216 4.94117 4.96596 4.96997 4.98082 5.03182 5.16088 5.18726 5.43568 5.47777 5.54440 5.72830 5.85880 5.90693 6.18733 6.23762 6.55995 6.57872 6.88106 7.23139 7.39822 8.93693 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.001954 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.569186 B =14328.514567 C =14818.102638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.103 3.897 3 N -0.310 5.310 4 N -0.349 5.349 5 C 0.152 3.848 6 C -0.158 4.158 7 C 0.065 3.935 8 O -0.402 6.402 9 C 0.067 3.933 10 C -0.159 4.159 11 C 0.135 3.865 12 C -0.100 4.100 13 C -0.311 4.311 14 C 0.601 3.399 15 O -0.585 6.585 16 N -0.704 5.704 17 C 0.130 3.870 18 C -0.101 4.101 19 C 0.023 3.977 20 C -0.539 4.539 21 H 0.066 0.934 22 C -0.004 4.004 23 N -0.934 5.934 24 Si 0.966 3.034 25 H -0.259 1.259 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.412 0.588 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.066 0.934 48 H -0.008 1.008 49 H -0.006 1.006 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.071 28.004 -5.549 32.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 N -0.132 5.132 4 N -0.128 5.128 5 C 0.051 3.949 6 C -0.196 4.196 7 C -0.012 4.012 8 O -0.321 6.321 9 C -0.010 4.010 10 C -0.198 4.198 11 C 0.003 3.997 12 C -0.158 4.158 13 C -0.326 4.326 14 C 0.387 3.613 15 O -0.465 6.465 16 N -0.354 5.354 17 C 0.006 3.994 18 C -0.139 4.139 19 C -0.014 4.014 20 C -0.577 4.577 21 H 0.084 0.916 22 C -0.202 4.202 23 N -0.575 5.575 24 Si 0.791 3.209 25 H -0.182 1.182 26 H -0.207 1.207 27 H -0.205 1.205 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.127 0.873 42 H 0.102 0.898 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.011 0.989 49 H 0.012 0.988 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.022 29.000 -6.320 33.729 hybrid contribution -0.726 -1.886 0.801 2.174 sum 15.295 27.114 -5.519 31.616 Atomic orbital electron populations 1.20296 0.85279 1.03673 1.04246 1.22591 0.97671 0.88793 0.97316 1.77015 0.86896 1.22437 1.26826 1.48607 1.05518 1.03672 1.54997 1.21805 0.84610 0.91088 0.97356 1.22523 1.01364 0.98570 0.97174 1.22715 0.96393 0.94206 0.87865 1.87963 1.94439 1.35016 1.14646 1.22691 0.96273 0.93999 0.88085 1.22525 1.01411 0.98667 0.97172 1.21737 0.96341 0.85079 0.96513 1.20727 0.91765 0.98297 1.05000 1.19825 0.93496 0.93105 1.26173 1.17564 0.75674 0.84968 0.83081 1.90753 1.53513 1.69067 1.33128 1.46016 1.67432 1.13233 1.08732 1.21290 0.98873 0.81019 0.98223 1.21589 1.01579 0.97097 0.93590 1.18950 0.94812 0.91781 0.95897 1.21704 1.44787 0.97609 0.93556 0.91609 1.26018 0.95137 0.97269 1.01763 1.70114 1.47189 1.07017 1.33155 0.85377 0.77671 0.78414 0.79433 1.18247 1.20675 1.20548 0.88695 0.89407 0.91356 0.84830 0.91767 0.89396 0.90308 0.87185 0.90309 0.87269 0.89897 0.91837 0.88622 0.87267 0.89828 0.75128 0.93118 0.92769 0.91309 0.91571 0.98924 0.98765 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.28 71.23 0.73 -0.92 16 2 C 0.10 2.66 7.26 43.51 0.32 2.97 16 3 N -0.31 -7.66 12.33 -46.68 -0.58 -8.23 16 4 N -0.35 -6.79 3.26 -312.06 -1.02 -7.80 16 5 C 0.15 1.83 2.98 45.11 0.13 1.96 16 6 C -0.16 -1.79 5.67 30.68 0.17 -1.61 16 7 C 0.07 0.52 6.84 72.01 0.49 1.02 16 8 O -0.40 -5.10 10.77 -148.98 -1.60 -6.70 16 9 C 0.07 0.56 6.84 72.01 0.49 1.05 16 10 C -0.16 -1.93 5.68 30.68 0.17 -1.75 16 11 C 0.14 2.83 7.01 42.14 0.30 3.13 16 12 C -0.10 -1.38 9.75 71.24 0.69 -0.68 16 13 C -0.31 -8.36 5.88 -20.15 -0.12 -8.47 16 14 C 0.60 19.17 6.97 86.66 0.60 19.78 16 15 O -0.58 -23.76 17.11 -4.04 -0.07 -23.83 16 16 N -0.70 -20.50 5.55 -466.36 -2.59 -23.09 16 17 C 0.13 4.59 5.67 86.38 0.49 5.08 16 18 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 19 C 0.02 1.20 4.97 29.85 0.15 1.35 16 20 C -0.54 -29.89 9.11 25.60 0.23 -29.65 16 21 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 22 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 23 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 24 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.63 8.01 -2.38 -0.02 1.61 16 31 H 0.13 0.81 6.64 -2.39 -0.02 0.80 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.28 8.14 -2.38 -0.02 0.26 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 0.73 7.08 -2.39 -0.02 0.71 16 42 H 0.08 1.34 7.96 -2.38 -0.02 1.32 16 43 H 0.41 9.81 8.46 -92.71 -0.78 9.03 16 44 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 48 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 49 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 50 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -77.04 411.42 2.09 -74.95 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.14 Total: 15.84 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 5.49 Total: -10.23 kcal Atomic # 7 Polarization: -91.80 SS G_CDS: -3.90 Total: -95.70 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -1.67 Total: -30.53 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.04 2.09 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198446590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.522 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds