Wall clock time and date at job start Tue Mar 31 2020 18:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34482 * 125.57412 * 2 1 4 4 C 1.46691 * 106.33034 * 179.97438 * 3 2 1 5 5 C 1.47258 * 126.94121 * 180.02562 * 4 3 2 6 6 O 1.21625 * 120.00213 * 142.82032 * 5 4 3 7 7 N 1.34781 * 120.00142 * 322.81641 * 5 4 3 8 8 C 1.47511 * 118.75645 * 354.40071 * 7 5 4 9 9 C 1.53570 * 111.03181 * 221.60524 * 8 7 5 10 10 C 1.51539 * 109.57813 * 39.97649 * 9 8 7 11 11 O 1.42160 * 108.75476 * 268.59931 * 10 9 8 12 12 C 1.38015 * 119.43398 * 87.23227 * 11 10 9 13 13 H 1.09003 * 109.46829 * 56.57492 * 12 11 10 14 14 C 1.53009 * 109.46692 * 176.56514 * 12 11 10 15 15 N 1.46499 * 109.46928 * 300.00219 * 14 12 11 16 16 C 1.36937 * 119.99510 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00470 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99870 * 179.97438 * 16 15 14 19 19 N 1.31616 * 119.99978 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 119.99910 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47354 * 89.99793 * 20 18 16 22 22 H 1.48500 * 109.47010 * 209.99684 * 20 18 16 23 23 H 1.48504 * 109.47089 * 329.99678 * 20 18 16 24 24 C 1.45120 * 118.75938 * 174.13290 * 7 5 4 25 25 C 1.36767 * 106.11655 * 0.26388 * 4 3 2 26 26 C 1.50697 * 125.80217 * 179.71860 * 25 4 3 27 27 N 1.34658 * 108.39700 * 359.57189 * 25 4 3 28 28 C 1.46504 * 124.85244 * 180.14927 * 27 25 4 29 29 H 1.08993 * 109.47396 * 90.01815 * 1 2 3 30 30 H 1.08997 * 109.47369 * 210.02584 * 1 2 3 31 31 H 1.09001 * 109.46475 * 330.01846 * 1 2 3 32 32 H 1.07996 * 126.83420 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.16726 * 342.00632 * 8 7 5 34 34 H 1.08994 * 109.17000 * 101.20002 * 8 7 5 35 35 H 1.09000 * 109.45644 * 160.00792 * 9 8 7 36 36 H 1.08997 * 109.45232 * 279.96805 * 9 8 7 37 37 H 1.09000 * 109.59549 * 28.38303 * 10 9 8 38 38 H 1.08998 * 109.58911 * 148.68079 * 10 9 8 39 39 H 1.08996 * 109.46784 * 59.99849 * 14 12 11 40 40 H 1.08995 * 109.46678 * 180.02562 * 14 12 11 41 41 H 0.96994 * 120.00346 * 0.02562 * 15 14 12 42 42 H 0.97003 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.45646 * 210.76057 * 24 7 5 44 44 H 1.09003 * 109.45964 * 330.71031 * 24 7 5 45 45 H 1.09002 * 109.47361 * 90.02441 * 26 25 4 46 46 H 1.09006 * 109.47474 * 210.02187 * 26 25 4 47 47 H 1.08997 * 109.47206 * 330.02456 * 26 25 4 48 48 H 1.09006 * 109.46918 * 270.31804 * 28 27 25 49 49 H 1.08998 * 109.47306 * 30.31165 * 28 27 25 50 50 H 1.09000 * 109.47071 * 150.31830 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6743 0.6104 0.0006 5 6 4.8978 1.4299 0.0014 6 8 5.8698 1.0710 0.6383 7 7 4.9406 2.5777 -0.7038 8 6 3.7944 2.9244 -1.5653 9 6 4.2684 3.4954 -2.9098 10 6 5.4768 2.7193 -3.3934 11 8 6.6526 3.3608 -2.9169 12 6 7.1459 3.0336 -1.6701 13 1 7.3320 1.9606 -1.6232 14 6 8.4536 3.7891 -1.4248 15 7 9.4319 3.4177 -2.4500 16 6 10.6840 3.9720 -2.4343 17 1 10.9504 4.6825 -1.6660 18 6 11.6112 3.6197 -3.4055 19 7 12.8145 4.1528 -3.3907 20 14 11.1506 2.3901 -4.7341 21 1 10.5759 3.1111 -5.8982 22 1 12.3627 1.6463 -5.1618 23 1 10.1472 1.4352 -4.1986 24 6 6.1099 3.4285 -0.5825 25 6 3.5997 -0.7553 -0.0051 26 6 4.7720 -1.7022 -0.0128 27 7 2.3007 -1.1099 0.0006 28 6 1.8097 -2.4903 0.0002 29 1 -0.3634 -0.0003 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3632 0.8902 0.5136 32 1 1.9630 2.1233 0.0004 33 1 3.1992 2.0294 -1.7464 34 1 3.1777 3.6667 -1.0587 35 1 3.4661 3.4116 -3.6429 36 1 4.5373 4.5441 -2.7842 37 1 5.4349 1.7004 -3.0085 38 1 5.4855 2.6984 -4.4831 39 1 8.2675 4.8621 -1.4719 40 1 8.8434 3.5304 -0.4403 41 1 9.1925 2.7798 -3.1404 42 1 13.4622 3.9068 -4.0696 43 1 5.8172 4.4696 -0.7195 44 1 6.5496 3.3025 0.4069 45 1 5.0575 -1.9353 1.0130 46 1 4.4941 -2.6205 -0.5301 47 1 5.6125 -1.2357 -0.5267 48 1 1.6883 -2.8324 -1.0276 49 1 2.5263 -3.1309 0.5141 50 1 0.8493 -2.5344 0.5137 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202020873.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:21 Heat of formation + Delta-G solvation = -6.485840 kcal Electronic energy + Delta-G solvation = -30274.989123 eV Core-core repulsion = 26304.087236 eV Total energy + Delta-G solvation = -3970.901887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.81861 -40.15696 -38.21369 -35.59515 -34.63145 -33.24957 -33.05278 -32.66177 -31.04781 -29.55430 -29.17418 -27.41835 -26.28042 -25.53414 -24.56591 -22.64353 -21.72254 -21.05602 -20.91454 -19.99676 -18.15551 -17.59884 -17.25321 -16.46879 -16.32698 -16.18701 -15.94371 -15.56514 -14.78142 -14.60741 -14.29513 -14.04395 -13.81048 -13.71728 -13.58075 -13.49666 -13.30608 -13.14724 -12.90601 -12.76963 -12.67879 -12.48369 -12.45269 -12.31794 -12.10703 -11.91792 -11.82148 -11.63167 -11.28214 -11.06643 -10.79584 -10.75179 -10.23132 -10.01624 -9.74719 -9.46763 -9.36854 -8.78025 -8.76868 -8.47279 -8.21718 -7.07761 -5.64295 -2.97754 1.66295 2.11452 2.44196 3.03415 3.33844 3.49403 3.54232 3.55265 3.96136 4.28752 4.33186 4.51501 4.63265 4.69689 4.72691 4.75675 4.78013 4.85248 4.92709 4.97261 5.07622 5.12414 5.23606 5.31900 5.36915 5.40725 5.41522 5.44231 5.54424 5.63146 5.64341 5.65164 5.67724 5.73557 5.84949 5.93837 5.95323 6.01971 6.10962 6.14989 6.53184 6.64675 6.69127 6.79864 6.83504 6.94941 7.41465 7.98749 8.12941 8.32479 8.55145 9.35564 10.08284 10.29869 11.54390 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002883 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.631985 B = 9710.510820 C =10153.494190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.009 3.991 3 C -0.165 4.165 4 C -0.226 4.226 5 C 0.584 3.416 6 O -0.538 6.538 7 N -0.606 5.606 8 C 0.107 3.893 9 C -0.167 4.167 10 C 0.073 3.927 11 O -0.372 6.372 12 C 0.085 3.915 13 H 0.052 0.948 14 C 0.171 3.829 15 N -0.750 5.750 16 C -0.237 4.237 17 H 0.090 0.910 18 C 0.002 3.998 19 N -0.937 5.937 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.278 1.278 24 C 0.085 3.915 25 C 0.096 3.904 26 C -0.089 4.089 27 N -0.442 5.442 28 C 0.066 3.934 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.364 0.636 42 H 0.258 0.742 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.366 -11.759 5.918 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.189 4.189 4 C -0.236 4.236 5 C 0.374 3.626 6 O -0.415 6.415 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.205 4.205 10 C -0.003 4.003 11 O -0.290 6.290 12 C 0.025 3.975 13 H 0.069 0.931 14 C 0.043 3.957 15 N -0.395 5.395 16 C -0.367 4.367 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.586 5.586 20 Si 0.717 3.283 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.204 1.204 24 C -0.039 4.039 25 C -0.020 4.020 26 C -0.146 4.146 27 N -0.119 5.119 28 C -0.076 4.076 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.197 0.803 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.721 -11.986 6.229 34.477 hybrid contribution -0.572 -1.013 -0.857 1.444 sum -32.293 -12.999 5.372 35.223 Atomic orbital electron populations 1.20317 0.87868 1.03185 1.02615 1.20199 0.93466 0.85520 1.10715 1.21799 0.90487 0.97575 1.09083 1.20065 0.93104 0.92117 1.18296 1.17572 0.86262 0.80210 0.78578 1.90799 1.36766 1.70316 1.43633 1.47719 1.19117 1.22005 1.45000 1.22146 0.87737 1.01279 0.90421 1.22508 0.99363 1.02052 0.96590 1.22101 0.84245 0.95236 0.98750 1.86397 1.42541 1.66105 1.33992 1.22417 0.93323 0.99175 0.82609 0.93057 1.20604 0.85363 0.96779 0.92974 1.42558 1.11708 1.53095 1.32171 1.19080 0.87074 1.19817 1.10771 0.89196 1.24639 0.95798 1.00019 0.98890 1.69709 1.04873 1.47154 1.36860 0.86497 0.77014 0.81882 0.82903 1.21096 1.21948 1.20424 1.22446 0.85791 0.94214 1.01399 1.20197 0.84627 0.93919 1.03227 1.20435 0.94072 0.96551 1.03548 1.43403 1.05048 1.06380 1.57110 1.22072 1.01512 0.80496 1.03472 0.91020 0.91890 0.90086 0.83703 0.88901 0.91964 0.89935 0.90051 0.93503 0.89563 0.94749 0.93926 0.80291 0.93216 0.89878 0.88893 0.90086 0.91784 0.89402 0.90707 0.89598 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.06 36.01 0.36 -0.02 16 2 C 0.01 0.07 6.85 -81.86 -0.56 -0.49 16 3 C -0.17 -1.62 8.58 -37.50 -0.32 -1.94 16 4 C -0.23 -2.84 5.24 -103.35 -0.54 -3.38 16 5 C 0.58 8.87 7.27 -12.59 -0.09 8.78 16 6 O -0.54 -10.02 15.73 5.26 0.08 -9.94 16 7 N -0.61 -8.20 2.18 -173.47 -0.38 -8.58 16 8 C 0.11 1.08 4.86 -3.19 -0.02 1.07 16 9 C -0.17 -1.72 5.79 -27.17 -0.16 -1.88 16 10 C 0.07 1.00 6.37 36.42 0.23 1.23 16 11 O -0.37 -6.65 9.18 -26.53 -0.24 -6.90 16 12 C 0.08 1.54 2.74 -25.50 -0.07 1.47 16 13 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 14 C 0.17 3.66 5.95 -4.04 -0.02 3.63 16 15 N -0.75 -19.60 5.29 -59.91 -0.32 -19.92 16 16 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 17 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 18 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 19 N -0.94 -30.69 13.97 55.49 0.78 -29.92 16 20 Si 0.89 23.61 27.73 -169.99 -4.71 18.89 16 21 H -0.28 -7.50 7.11 56.52 0.40 -7.09 16 22 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 23 H -0.28 -7.11 6.52 56.52 0.37 -6.74 16 24 C 0.09 1.28 4.86 -3.56 -0.02 1.27 16 25 C 0.10 1.06 6.88 -81.89 -0.56 0.50 16 26 C -0.09 -0.89 9.22 36.00 0.33 -0.55 16 27 N -0.44 -3.73 3.09 -115.27 -0.36 -4.08 16 28 C 0.07 0.29 10.39 59.85 0.62 0.91 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.22 6.94 -51.93 -0.36 -0.14 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.15 1.19 7.12 -52.49 -0.37 0.81 16 33 H 0.09 0.89 5.19 -51.93 -0.27 0.62 16 34 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 37 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.36 9.50 5.39 -40.82 -0.22 9.28 16 42 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 43 H 0.08 1.13 8.11 -51.92 -0.42 0.70 16 44 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.46 7.59 -51.93 -0.39 0.07 16 47 H 0.09 1.07 7.59 -51.93 -0.39 0.68 16 48 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.09 0.31 7.51 -51.93 -0.39 -0.08 16 50 H 0.09 0.23 6.90 -51.93 -0.36 -0.13 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -37.88 391.60 -8.49 -46.37 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -8.17 Total: 4.93 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.07 Total: 3.24 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.28 Total: -62.49 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.16 Total: -16.83 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.71 Total: 18.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.88 -8.49 -46.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202020873.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.883 kcal (2) G-P(sol) polarization free energy of solvation -37.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds